ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
2dbj|AK069689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
3dbj|AK059083.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
4gb|AC079357.3| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
6gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete s... 48 0.024
7gb|BC043632.1| Xenopus laevis hypothetical protein MGC64306, mRN... 46 0.093
8gb|BC056840.1| Xenopus laevis hypothetical protein MGC64306, mRN... 46 0.093
9ref|NM_001032316.1| Xenopus tropicalis lactotransferrin (ltf), mRNA 46 0.093
10gb|BC096012.1| Xenopus tropicalis lactotransferrin, mRNA (cDNA c... 46 0.093
11emb|AL390816.4|CNS06C7V Human chromosome 14 DNA sequence BAC R-3... 44 0.37
12gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete... 42 1.5
13emb|CR974575.8| Mouse DNA sequence from clone RP23-77K24 on chro... 42 1.5
14gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, c... 42 1.5
15emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chrom... 42 1.5
16emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on ... 42 1.5
17gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can... 42 1.5
18gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, com... 42 1.5
19emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, ... 42 1.5
20gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 42 1.5
21emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chrom... 42 1.5
22gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.8
23gb|AC102594.15| Mus musculus chromosome 5, clone RP23-356G21, co... 40 5.8
24gb|AE006264.1| Lactococcus lactis subsp. lactis IL1403 section 2... 40 5.8
25ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, ... 40 5.8
26gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, com... 40 5.8
27gb|BC054950.1| Xenopus laevis transferrin, mRNA (cDNA clone MGC:... 40 5.8
28gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, com... 40 5.8
29gb|AC122203.4| Mus musculus BAC clone RP23-69J7 from 5, complete... 40 5.8
30gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, compl... 40 5.8
31ref|XM_731354.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.8
32ref|XM_736166.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.8
33ref|XM_733186.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.8
34emb|AL731702.12| Human DNA sequence from clone RP3-451C13 on chr... 40 5.8
35emb|AL360169.17| Human DNA sequence from clone RP11-732M18 on ch... 40 5.8
36emb|AL139186.16| Human DNA sequence from clone RP11-76N11 on chr... 40 5.8
37emb|X54530.1|XLTRSFER X.laevis mRNA for transferrin 40 5.8
38emb|AJ427634.1|VVI427634 Vitis vinifera partial mRNA for S-adeno... 40 5.8
39gb|AC090431.9| Mus Musculus Strain C57BL6/J chromosome 14 RP23-3... 40 5.8
40gb|AC024591.4| Homo sapiens chromosome 16 clone RP11-511G21, com... 40 5.8
41gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromos... 40 5.8
42gb|AC008502.8| Homo sapiens chromosome 5 clone CTC-442G11, compl... 40 5.8
43gb|AC008362.5|AC008362 Drosophila melanogaster, chromosome 3R, r... 40 5.8
44gb|AC008361.8|AC008361 Drosophila melanogaster, chromosome 3R, r... 40 5.8
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complet... 40 5.8
47gb|AF074705.2|AF074705 Pseudomonas aeruginosa dihydroaeruginoic ... 40 5.8
48gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome... 40 5.8
49gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y,... 40 5.8
50gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y,... 40 5.8
51gb|AE004839.1| Pseudomonas aeruginosa PAO1, section 400 of 529 o... 40 5.8
52gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, comple... 40 5.8
53gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complet... 40 5.8
54gb|AC007428.5|AC007428 Homo sapiens, clone RP11-69A1, complete s... 40 5.8
55dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
56dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
57gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complet... 40 5.8
58gb|AC006989.3|AC006989 Homo sapiens BAC clone RP11-225B4 from Y,... 40 5.8
59dbj|AK065697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
60gb|AE003720.3| Drosophila melanogaster chromosome 3R, section 58... 40 5.8
61dbj|AK112233.1| Ciona intestinalis cDNA, clone:cicl004m07, full ... 40 5.8
62gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, comple... 40 5.8
63gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 5.8
64emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chr... 40 5.8
65gb|AC125792.2| Homo sapiens chromosome 16 clone CTD-3032L3, comp... 40 5.8 
>dbj|AK105618.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C01, full
           insert sequence
          Length = 2251

 Score =  343 bits (173), Expect = 3e-91
 Identities = 287/325 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  atgcttggatggcgtccatttaaagatggagtgccagggccctacttatggaaatcatac 100
           ||||| |||||||||||  | ||||||||||||  |||||| ||| ||||||||||||||
Sbjct: 275 atgctcggatggcgtcctgtaaaagatggagtgatagggccatacatatggaaatcatac 334

                                                                       
Query: 101 aaggatgtctatgaggaagtcctgcaaattggatctgcactgcagcagctaggggtgcag 160
           | ||| || ||||| |||||||||||| ||||||||||  |||||||||| |||||| ||
Sbjct: 335 agggaagtgtatgaagaagtcctgcaagttggatctgctttgcagcagctgggggtgaag 394

                                                                       
Query: 161 ccaggttccagggttggaatttatggatccaactgccctcaatgggtggtagcaatgcag 220
           ||||||||| || ||||||| |||||||| ||||||||||| ||| | ||||||||||||
Sbjct: 395 ccaggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcag 454

                                                                       
Query: 221 gcttgcaatggctacagcataatatgtgtcccactatacgatactttaggtgcaggagct 280
           ||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 455 gcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggtgcaggagct 514

                                                                       
Query: 281 gttgactacattattgaccatgctgagattgatgttgtcttcatacaagacaagaaaata 340
           ||||||| |||||||||||||||||| || |||||| ||||  | || ||||||||||||
Sbjct: 515 gttgacttcattattgaccatgctgaaatcgatgttatctttgttcaggacaagaaaata 574

                                    
Query: 341 aaagaaatactgtccccaaattgca 365
           ||||||||||||||| |||||||||
Sbjct: 575 aaagaaatactgtccgcaaattgca 599
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>dbj|AK069689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H22, full
           insert sequence
          Length = 2378

 Score =  343 bits (173), Expect = 3e-91
 Identities = 287/325 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  atgcttggatggcgtccatttaaagatggagtgccagggccctacttatggaaatcatac 100
           ||||| |||||||||||  | ||||||||||||  |||||| ||| ||||||||||||||
Sbjct: 276 atgctcggatggcgtcctgtaaaagatggagtgatagggccatacatatggaaatcatac 335

                                                                       
Query: 101 aaggatgtctatgaggaagtcctgcaaattggatctgcactgcagcagctaggggtgcag 160
           | ||| || ||||| |||||||||||| ||||||||||  |||||||||| |||||| ||
Sbjct: 336 agggaagtgtatgaagaagtcctgcaagttggatctgctttgcagcagctgggggtgaag 395

                                                                       
Query: 161 ccaggttccagggttggaatttatggatccaactgccctcaatgggtggtagcaatgcag 220
           ||||||||| || ||||||| |||||||| ||||||||||| ||| | ||||||||||||
Sbjct: 396 ccaggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcag 455

                                                                       
Query: 221 gcttgcaatggctacagcataatatgtgtcccactatacgatactttaggtgcaggagct 280
           ||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 456 gcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggtgcaggagct 515

                                                                       
Query: 281 gttgactacattattgaccatgctgagattgatgttgtcttcatacaagacaagaaaata 340
           ||||||| |||||||||||||||||| || |||||| ||||  | || ||||||||||||
Sbjct: 516 gttgacttcattattgaccatgctgaaatcgatgttatctttgttcaggacaagaaaata 575

                                    
Query: 341 aaagaaatactgtccccaaattgca 365
           ||||||||||||||| |||||||||
Sbjct: 576 aaagaaatactgtccgcaaattgca 600
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>dbj|AK059083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B01, full
           insert sequence
          Length = 1617

 Score =  264 bits (133), Expect = 2e-67
 Identities = 202/225 (89%)
 Strand = Plus / Plus

                                                                       
Query: 141 tgcagcagctaggggtgcagccaggttccagggttggaatttatggatccaactgccctc 200
           |||||||||| |||||| ||||||||||| || ||||||| |||||||| ||||||||||
Sbjct: 3   tgcagcagctgggggtgaagccaggttcccggattggaatatatggatcaaactgccctc 62

                                                                       
Query: 201 aatgggtggtagcaatgcaggcttgcaatggctacagcataatatgtgtcccactatacg 260
           | ||| | ||||||||||||||||||||||| |||||| |||| ||||||||||| ||||
Sbjct: 63  agtggatagtagcaatgcaggcttgcaatggttacagcttaatctgtgtcccactctacg 122

                                                                       
Query: 261 atactttaggtgcaggagctgttgactacattattgaccatgctgagattgatgttgtct 320
           |||| |||||||||||||||||||||| |||||||||||||||||| || |||||| |||
Sbjct: 123 atacgttaggtgcaggagctgttgacttcattattgaccatgctgaaatcgatgttatct 182

                                                        
Query: 321 tcatacaagacaagaaaataaaagaaatactgtccccaaattgca 365
           |  | || ||||||||||||||||||||||||||| |||||||||
Sbjct: 183 ttgttcaggacaagaaaataaaagaaatactgtccgcaaattgca 227
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>gb|AC079357.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0033D06,
              complete sequence
          Length = 142659

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                          
Query: 268    aggtgcaggagctgttgactacattattgaccatgctgagattgatgttgtcttcataca 327
              |||||||||||||||||||| |||||||||||||||||| || |||||| ||||  | ||
Sbjct: 123049 aggtgcaggagctgttgacttcattattgaccatgctgaaatcgatgttatctttgttca 122990

                                 
Query: 328    agacaagaaaataaaagaa 346
               ||||||||||||||||||
Sbjct: 122989 ggacaagaaaataaaagaa 122971



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                          
Query: 76     agggccctacttatggaaatcatacaaggatgtctatgaggaagtcctgcaaattggatc 135
              |||||| ||| ||||||||||||||| ||| || ||||| |||||||||||| |||||||
Sbjct: 123775 agggccatacatatggaaatcatacagggaagtgtatgaagaagtcctgcaagttggatc 123716

                                           
Query: 136    tgcactgcagcagctaggggtgcagccag 164
              |||  |||||||||| |||||| ||||||
Sbjct: 123715 tgctttgcagcagctgggggtgaagccag 123687



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 214    aatgcaggcttgcaatggctacagcataatatgtgtcccactatacgatactttaggt 271
              |||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||
Sbjct: 123391 aatgcaggcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggt 123334



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 164    ggttccagggttggaatttatggatccaactgccctcaatgggtggtagcaatgcagg 221
              |||||| || ||||||| |||||||| ||||||||||| ||| | |||||||||||||
Sbjct: 123541 ggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcagg 123484
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                           
Query: 268     aggtgcaggagctgttgactacattattgaccatgctgagattgatgttgtcttcataca 327
               |||||||||||||||||||| |||||||||||||||||| || |||||| ||||  | ||
Sbjct: 1810320 aggtgcaggagctgttgacttcattattgaccatgctgaaatcgatgttatctttgttca 1810261

                                  
Query: 328     agacaagaaaataaaagaa 346
                ||||||||||||||||||
Sbjct: 1810260 ggacaagaaaataaaagaa 1810242



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                           
Query: 76      agggccctacttatggaaatcatacaaggatgtctatgaggaagtcctgcaaattggatc 135
               |||||| ||| ||||||||||||||| ||| || ||||| |||||||||||| |||||||
Sbjct: 1811046 agggccatacatatggaaatcatacagggaagtgtatgaagaagtcctgcaagttggatc 1810987

                                            
Query: 136     tgcactgcagcagctaggggtgcagccag 164
               |||  |||||||||| |||||| ||||||
Sbjct: 1810986 tgctttgcagcagctgggggtgaagccag 1810958



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                         
Query: 214     aatgcaggcttgcaatggctacagcataatatgtgtcccactatacgatactttaggt 271
               |||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||
Sbjct: 1810662 aatgcaggcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggt 1810605



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 164     ggttccagggttggaatttatggatccaactgccctcaatgggtggtagcaatgcagg 221
               |||||| || ||||||| |||||||| ||||||||||| ||| | |||||||||||||
Sbjct: 1810812 ggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcagg 1810755
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>gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete sequence
          Length = 130178

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 174   ttggaatttatggatccaactgccctcaatgg 205
             |||||||||||||||| |||||||| ||||||
Sbjct: 33322 ttggaatttatggatctaactgcccacaatgg 33353
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>gb|BC043632.1| Xenopus laevis hypothetical protein MGC64306, mRNA (cDNA clone
            IMAGE:4889098), partial cds
          Length = 2308

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 223  ttgcaatggctacagcataatat 245
            |||||||||||||||||||||||
Sbjct: 1399 ttgcaatggctacagcataatat 1377
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>gb|BC056840.1| Xenopus laevis hypothetical protein MGC64306, mRNA (cDNA clone
            MGC:64306 IMAGE:6875438), complete cds
          Length = 2336

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 223  ttgcaatggctacagcataatat 245
            |||||||||||||||||||||||
Sbjct: 1411 ttgcaatggctacagcataatat 1389
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>ref|NM_001032316.1| Xenopus tropicalis lactotransferrin (ltf), mRNA
          Length = 2330

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 223  ttgcaatggctacagcataatat 245
            |||||||||||||||||||||||
Sbjct: 1399 ttgcaatggctacagcataatat 1377
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>gb|BC096012.1| Xenopus tropicalis lactotransferrin, mRNA (cDNA clone MGC:107777
            IMAGE:7016543), complete cds
          Length = 2330

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 223  ttgcaatggctacagcataatat 245
            |||||||||||||||||||||||
Sbjct: 1399 ttgcaatggctacagcataatat 1377
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>emb|AL390816.4|CNS06C7V Human chromosome 14 DNA sequence BAC R-355I22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206413

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 327    aagacaagaaaataaaagaaatactg 352
              |||||||||||||||||| |||||||
Sbjct: 159531 aagacaagaaaataaaaggaatactg 159506
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>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence
          Length = 89097

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 327   aagacaagaaaataaaagaaa 347
             |||||||||||||||||||||
Sbjct: 16739 aagacaagaaaataaaagaaa 16759
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>emb|CR974575.8| Mouse DNA sequence from clone RP23-77K24 on chromosome 12, complete
              sequence
          Length = 221107

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    aagacaagaaaataaaagaaa 347
              |||||||||||||||||||||
Sbjct: 141355 aagacaagaaaataaaagaaa 141335
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>gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, complete sequence
          Length = 199650

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    aagacaagaaaataaaagaaa 347
              |||||||||||||||||||||
Sbjct: 175506 aagacaagaaaataaaagaaa 175526
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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 316   tgtcttcatacaagacaagaaaataaaag 344
             |||||| |||||||||||||||| |||||
Sbjct: 43106 tgtctttatacaagacaagaaaacaaaag 43134
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>emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on chromosome 6q16.1-21 Contains
             the 5' end of the gene for a novel protein (KIAA1900) and
             a CpG island, complete sequence
          Length = 150789

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 334   gaaaataaaagaaatactgtc 354
             |||||||||||||||||||||
Sbjct: 30042 gaaaataaaagaaatactgtc 30062
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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 155413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 316  tgtcttcatacaagacaagaaaataaaag 344
            |||||| |||||||||||||||| |||||
Sbjct: 6697 tgtctttatacaagacaagaaaacaaaag 6725
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>gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, complete sequence
          Length = 216342

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    gccctacttatggaaatcata 99
             |||||||||||||||||||||
Sbjct: 84966 gccctacttatggaaatcata 84946
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>emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, complete sequence
          Length = 177531

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   agacaagaaaataaaagaaat 348
             |||||||||||||||||||||
Sbjct: 28812 agacaagaaaataaaagaaat 28792
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 316    tgtcttcatacaagacaagaaaataaaag 344
              |||||| |||||||||||||||| |||||
Sbjct: 138534 tgtctttatacaagacaagaaaacaaaag 138506
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>emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chromosome X, complete
             sequence
          Length = 200519

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   aaatactgtccccaaattgca 365
             |||||||||||||||||||||
Sbjct: 80657 aaatactgtccccaaattgca 80637
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tgcagcagctaggggtgcag 160
             ||||||||||||||||||||
Sbjct: 95566 tgcagcagctaggggtgcag 95585
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>gb|AC102594.15| Mus musculus chromosome 5, clone RP23-356G21, complete sequence
          Length = 189741

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     taaagatggagtgccagggc 80
              ||||||||||||||||||||
Sbjct: 165875 taaagatggagtgccagggc 165894
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>gb|AE006264.1| Lactococcus lactis subsp. lactis IL1403 section 26 of 218 of the
           complete genome
          Length = 10455

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 agacaagaaaataaaagaaa 347
           ||||||||||||||||||||
Sbjct: 93  agacaagaaaataaaagaaa 112
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>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on
              chromosome Y
          Length = 389013

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ctatgaggaagtcctgcaaa 128
              ||||||||||||||||||||
Sbjct: 309626 ctatgaggaagtcctgcaaa 309645
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>gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, complete sequence
          Length = 166620

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     ttatggaaatcatacaagga 105
              ||||||||||||||||||||
Sbjct: 116080 ttatggaaatcatacaagga 116099



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     ttatggaaatcatacaagga 105
              ||||||||||||||||||||
Sbjct: 110362 ttatggaaatcatacaagga 110381
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>gb|BC054950.1| Xenopus laevis transferrin, mRNA (cDNA clone MGC:64251
            IMAGE:6871784), complete cds
          Length = 2344

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  caatggctacagcataatat 245
            ||||||||||||||||||||
Sbjct: 1411 caatggctacagcataatat 1392
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>gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, complete sequence
          Length = 168656

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tggatctgcactgcagcagc 149
              ||||||||||||||||||||
Sbjct: 159028 tggatctgcactgcagcagc 159009
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>gb|AC122203.4| Mus musculus BAC clone RP23-69J7 from 5, complete sequence
          Length = 269047

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     taaagatggagtgccagggc 80
              ||||||||||||||||||||
Sbjct: 159822 taaagatggagtgccagggc 159803
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>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence
          Length = 184961

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    aagaaaataaaagaaatact 351
              ||||||||||||||||||||
Sbjct: 106514 aagaaaataaaagaaatact 106533
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>ref|XM_731354.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000184.01.0)
           partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 agaaaataaaagaaatactg 352
           ||||||||||||||||||||
Sbjct: 317 agaaaataaaagaaatactg 336
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>ref|XM_736166.1| Plasmodium chabaudi chabaudi hypothetical protein (PC106856.00.0)
           partial mRNA
          Length = 2071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 aagacaagaaaataaaagaa 346
           ||||||||||||||||||||
Sbjct: 535 aagacaagaaaataaaagaa 554
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>ref|XM_733186.1| Plasmodium chabaudi chabaudi hypothetical protein (PC405384.00.0)
           partial mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 aagacaagaaaataaaagaa 346
           ||||||||||||||||||||
Sbjct: 518 aagacaagaaaataaaagaa 537
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>emb|AL731702.12| Human DNA sequence from clone RP3-451C13 on chromosome 1 Contains the
             3' end of the gene for SVAP1 protein, the 5' end of the
             MPN2 gene for marapsin 2 and a CpG island, complete
             sequence
          Length = 44787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   caagacaagaaaataaaaga 345
             ||||||||||||||||||||
Sbjct: 35245 caagacaagaaaataaaaga 35264
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>emb|AL360169.17| Human DNA sequence from clone RP11-732M18 on chromosome 6 Contains the
             5' end of the gene for tubby super-family protein (TUSP,
             KIAA1397), a novel gene, part of a novel gene and two CpG
             islands, complete sequence
          Length = 180635

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tacaagacaagaaaataaaa 343
             ||||||||||||||||||||
Sbjct: 55256 tacaagacaagaaaataaaa 55275
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>emb|AL139186.16| Human DNA sequence from clone RP11-76N11 on chromosome 13 Contains the
             5' end of the DACH gene for dachshund homolog (Drosophila)
             (DACH1 FLJ10138), a ribosomal protein L35 (RPL35)
             pseudogene and a CpG island, complete sequence
          Length = 157081

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   acaagaaaataaaagaaata 349
             ||||||||||||||||||||
Sbjct: 93056 acaagaaaataaaagaaata 93037
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>emb|X54530.1|XLTRSFER X.laevis mRNA for transferrin
          Length = 2280

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  caatggctacagcataatat 245
            ||||||||||||||||||||
Sbjct: 1377 caatggctacagcataatat 1358
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>emb|AJ427634.1|VVI427634 Vitis vinifera partial mRNA for S-adenosyl-L-methionine
           decarboxylase (samdc gene)
          Length = 879

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 aagaaaataaaagaaatact 351
           ||||||||||||||||||||
Sbjct: 124 aagaaaataaaagaaatact 105
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>gb|AC090431.9| Mus Musculus Strain C57BL6/J chromosome 14 RP23-324C9, complete sequence
          Length = 227949

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    atacaagacaagaaaataaa 342
              ||||||||||||||||||||
Sbjct: 152784 atacaagacaagaaaataaa 152803
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>gb|AC024591.4| Homo sapiens chromosome 16 clone RP11-511G21, complete sequence
          Length = 104680

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   tggatctgcactgcagcagc 149
             ||||||||||||||||||||
Sbjct: 80543 tggatctgcactgcagcagc 80562
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>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete
              sequence
          Length = 223327

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    cagccaggttccagggttgg 177
              ||||||||||||||||||||
Sbjct: 215927 cagccaggttccagggttgg 215908
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>gb|AC008502.8| Homo sapiens chromosome 5 clone CTC-442G11, complete sequence
          Length = 123495

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cagccaggttccagggttgg 177
             ||||||||||||||||||||
Sbjct: 66837 cagccaggttccagggttgg 66856
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>gb|AC008362.5|AC008362 Drosophila melanogaster, chromosome 3R, region 90D-90E, BAC clone
             BACR01C15, complete sequence
          Length = 153048

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ggatgtctatgaggaagtcc 122
             ||||||||||||||||||||
Sbjct: 35163 ggatgtctatgaggaagtcc 35144
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>gb|AC008361.8|AC008361 Drosophila melanogaster, chromosome 3R, region 90D-90D, BAC clone
             BACR35E22, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ggatgtctatgaggaagtcc 122
             ||||||||||||||||||||
Sbjct: 95718 ggatgtctatgaggaagtcc 95699
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                            
Query: 325      acaagacaagaaaataaa-agaaatact 351
                |||||||||||||||||| |||||||||
Sbjct: 23909151 acaagacaagaaaataaacagaaatact 23909124
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>gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complete sequence
          Length = 129660

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 321    tcatacaagacaagaaaataaaagaaatactg 352
              ||||| ||||| ||||||||||| ||||||||
Sbjct: 106699 tcatagaagacgagaaaataaaaaaaatactg 106668
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>gb|AF074705.2|AF074705 Pseudomonas aeruginosa dihydroaeruginoic acid synthetase (pchE),
             pyochelin synthetase (pchF), reductase (pchG), ABC
             transporter (pchH), and ABC transporter (pchI) genes,
             complete cds
          Length = 15023

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gcagcagctaggggtgcagccagg 165
             |||||||| |||||||||||||||
Sbjct: 12052 gcagcagccaggggtgcagccagg 12029
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>gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome 13, complete sequence
          Length = 182797

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gaaatcatacaaggatgtct 110
             ||||||||||||||||||||
Sbjct: 39704 gaaatcatacaaggatgtct 39723
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>gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y, complete sequence
          Length = 160601

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   ctatgaggaagtcctgcaaa 128
             ||||||||||||||||||||
Sbjct: 41345 ctatgaggaagtcctgcaaa 41364
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>gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y, complete sequence
          Length = 148058

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ctatgaggaagtcctgcaaa 128
              ||||||||||||||||||||
Sbjct: 116305 ctatgaggaagtcctgcaaa 116286
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>gb|AE004839.1| Pseudomonas aeruginosa PAO1, section 400 of 529 of the complete
            genome
          Length = 17071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  gcagcagctaggggtgcagccagg 165
            |||||||| |||||||||||||||
Sbjct: 5698 gcagcagccaggggtgcagccagg 5721
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>gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, complete sequence
          Length = 127342

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 325   acaagacaagaaaataaaagaaat 348
             ||||| ||||||||||||||||||
Sbjct: 34155 acaaggcaagaaaataaaagaaat 34178
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>gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complete sequence
          Length = 159471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 321    tcatacaagacaagaaaataaaagaaatactg 352
              ||||| ||||| ||||||||||| ||||||||
Sbjct: 118968 tcatagaagacgagaaaataaaaaaaatactg 118937
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>gb|AC007428.5|AC007428 Homo sapiens, clone RP11-69A1, complete sequence
          Length = 156180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    acaagaaaataaaagaaata 349
              ||||||||||||||||||||
Sbjct: 141435 acaagaaaataaaagaaata 141454
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 325   acaagacaagaaaataaa-agaaatact 351
             |||||||||||||||||| |||||||||
Sbjct: 55555 acaagacaagaaaataaacagaaatact 55528
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 325   acaagacaagaaaataaa-agaaatact 351
             |||||||||||||||||| |||||||||
Sbjct: 23673 acaagacaagaaaataaacagaaatact 23646
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>gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complete sequence
          Length = 157763

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   tttaaagatggagtgccagg 78
            ||||||||||||||||||||
Sbjct: 2542 tttaaagatggagtgccagg 2561
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>gb|AC006989.3|AC006989 Homo sapiens BAC clone RP11-225B4 from Y, complete sequence
          Length = 157666

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  tcatacaagacaagaaaataaaag 344
            ||||| ||||||||||||||||||
Sbjct: 9821 tcataaaagacaagaaaataaaag 9844
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>dbj|AK065697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037L21, full
            insert sequence
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 325  acaagacaagaaaataaa-agaaatact 351
            |||||||||||||||||| |||||||||
Sbjct: 1016 acaagacaagaaaataaacagaaatact 989
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>gb|AE003720.3| Drosophila melanogaster chromosome 3R, section 58 of 118 of the
             complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ggatgtctatgaggaagtcc 122
             ||||||||||||||||||||
Sbjct: 80594 ggatgtctatgaggaagtcc 80575
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>dbj|AK112233.1| Ciona intestinalis cDNA, clone:cicl004m07, full insert sequence
          Length = 1835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  cataatatgtgtcccactat 257
            ||||||||||||||||||||
Sbjct: 1463 cataatatgtgtcccactat 1482
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>gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, complete sequence
          Length = 205323

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   agacaagaaaataaaagaaa 347
             ||||||||||||||||||||
Sbjct: 63324 agacaagaaaataaaagaaa 63343
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      tttaaagatggagtgccagg 78
               ||||||||||||||||||||
Sbjct: 1431106 tttaaagatggagtgccagg 1431125
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>emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chromosome 2, complete
             sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   ggcaaataatgaacaaatca 425
             ||||||||||||||||||||
Sbjct: 60747 ggcaaataatgaacaaatca 60766
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>gb|AC125792.2| Homo sapiens chromosome 16 clone CTD-3032L3, complete sequence
          Length = 76433

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   tggatctgcactgcagcagc 149
             ||||||||||||||||||||
Sbjct: 63664 tggatctgcactgcagcagc 63683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,296,090
Number of Sequences: 3902068
Number of extensions: 4296090
Number of successful extensions: 121992
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 121733
Number of HSP's gapped (non-prelim): 263
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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