>UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing
            protease 7) (Deubiquitinating enzyme 7)
            (Herpesvirus-associated ubiquitin-specific protease)
          Length = 1102

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
 Frame = +3

Query: 6    YKIFPPHEKIENIN----DQYWTLRAEEIPEEEKNLTAQDR-LIHVYHFMKDPNQNQQIQ 170
            YKI   H++ E +         T R EEIP ++ ++  ++  L+ V HF K+        
Sbjct: 947  YKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV-----FG 1001

Query: 171  NFGDPFLLVIREGETAAEVMDRVQKKLRVPNEEFAKWKAAFISMNRPEYLQDIDAVSARF 350
             FG PFLL I +GE   EVM R+Q  L +  +EF K+K A +   R +Y+ + +      
Sbjct: 1002 TFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMTGRHQYINEDEYEVNLK 1061

Query: 351  QRRDVYGAWEQ---YLGLEHTDTTPKRSYTANQNRHTY-EKPVKIYN 479
                  G       +LGL+H +  PKRS      R+TY EK +KI+N
Sbjct: 1062 DFEPQPGNMSHPRPWLGLDHFNKAPKRS------RYTYLEKAIKIHN 1102

>UBP21_SCHPO (Q9UTT1) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 21) (Ubiquitin-specific
            processing protease 21) (Deubiquitinating enzyme 21)
          Length = 1129

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
 Frame = +3

Query: 6    YKIFPPHEKIENIND--QYWTLRAEEIPEEEK-NLTAQDRL-IHVYHFMKDPNQNQQIQN 173
            ++I   H   + I D  ++ T   E  P+EE+  L   D + I V HF KD ++   I  
Sbjct: 982  HRILKSHLPTDGIYDLNEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFKDLSRLHDI-- 1039

Query: 174  FGDPFLLVIREGETAAEVMDRVQKKLRVPNEEFAKWKAAFI---SMNRPEYLQDIDAVSA 344
               PF  V+  GET  ++  R+QK+L   + +F+K K A +   S  +P YL D D V  
Sbjct: 1040 ---PFYFVLLRGETLKDLKKRLQKRLGYNDTQFSKVKLAVLQAQSFGKPYYLTDDDEV-- 1094

Query: 345  RFQRRDVYGAWE---QYLGLEHTDTTPKRSY 428
                  +YG  E     LGL+H        Y
Sbjct: 1095 ------LYGELEPQSHILGLDHPPANGSAQY 1119

>PRP28_DEBHA (Q6BLU9) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC|
           3.6.1.-)
          Length = 580

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 27  EKIENINDQYWTLRAEEIPEEEKNLTAQDRLIHVYHFMKDPNQNQQIQNFGD 182
           E ++NIN Q+    A +  +E  +    D+L  +  F KD N+N  I  F +
Sbjct: 393 EAVDNINQQFEYFGARQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFAN 444

>ERR2_HUMAN (O95718) Steroid hormone receptor ERR2 (Estrogen-related receptor,|
           beta) (ERR-beta) (Estrogen receptor-like 2) (ERR beta-2)
          Length = 500

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/82 (25%), Positives = 40/82 (48%)
 Frame = +3

Query: 93  KNLTAQDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREGETAAEVMDRVQKKLRVPNEEF 272
           ++L   D+L++   ++ D   ++         L  + E   A   + R  KKL+V  EEF
Sbjct: 291 RSLPYDDKLVYAEDYIMDEEHSR---------LAGLLELYRAILQLVRRYKKLKVEKEEF 341

Query: 273 AKWKAAFISMNRPEYLQDIDAV 338
              KA  ++ +   Y++D++AV
Sbjct: 342 VTLKALALANSDSMYIEDLEAV 363

>MUTS_NEIG1 (Q5F5J4) DNA mismatch repair protein mutS|
          Length = 864

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 27/110 (24%), Positives = 51/110 (46%)
 Frame = +3

Query: 60  TLRAEEIPEEEKNLTAQDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREGETAAEVMDRV 239
           TL+A  +PE    L   + + H +H   + ++ ++IQN GD FLL +       E  +R 
Sbjct: 400 TLKAAVMPEPSVWLKDGNVINHGFH--PELDELRRIQNHGDEFLLDL-------EAKERE 450

Query: 240 QKKLRVPNEEFAKWKAAFISMNRPEYLQDIDAVSARFQRRDVYGAWEQYL 389
           +  L     EF +    +I +++ +     +   A +QRR      E+++
Sbjct: 451 RTGLSTLKVEFNRVHGFYIELSKTQ----AEQAPADYQRRQTLKNAERFI 496

>SMC5_YEAST (Q08204) Structural maintenance of chromosome 5|
          Length = 1093

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
 Frame = +3

Query: 30  KIENINDQYWTLRAEEIPEEEKNLTAQDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREG 209
           K   IN +  +++  +   + K+LT  D++  +       NQ+Q ++   D  L+V    
Sbjct: 425 KANAINHEMRSIQ-RQAESKTKSLTTTDKIGIL-------NQDQDLKEVRDAVLMVREHP 476

Query: 210 ETAAEVMDRVQKKLRVPNEEFAKWKAAFISMNRPEYLQDIDAVSARFQRRDVYGAWEQYL 389
           E   ++++     +   N +FA + A  +  N  + L  +D+ S +     +   ++  L
Sbjct: 477 EMKDKILEPPIMTVSAINAQFAAYLAQCVDYNTSKALTVVDSDSYKLFANPILDKFKVNL 536

Query: 390 -GLEHTDTTP 416
             L   DTTP
Sbjct: 537 RELSSADTTP 546

>FUT3_ARATH (Q9CA71) Probable fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3)|
          Length = 493

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 99  LTAQDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREGETAAEVMDRVQKKLRVPNEEFA- 275
           L   D+ I +Y  + +   N+Q Q+  D  L       T  +++  V K+  +P+ +   
Sbjct: 313 LAKADQRIGIYIGVSESG-NEQFQHLIDQILAC----GTRHKLLPEVDKQRNLPSSQVLN 367

Query: 276 -KWKAAFISMNRPEYLQDIDAVSARFQRRDVYGAWEQYLGLEHTDTTPKRSY 428
            K KA FIS + P Y + I         RDVY  WE    +    +  K SY
Sbjct: 368 RKSKAVFISSSSPGYFKSI---------RDVY--WENPTVMGEIISVHKPSY 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,615,381
Number of Sequences: 219361
Number of extensions: 2116615
Number of successful extensions: 5137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5136
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)