ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease mRNA, partial cds Length = 1593 Score = 539 bits (272), Expect = e-150 Identities = 431/484 (89%) Strand = Plus / Plus Query: 2 gatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactggac 61 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 573 gatttataagatatttccacctcacgagaaaatagagaacataaatgatcagtactggac 632 Query: 62 actacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttgat 121 |||||||||||||||||| |||||||| |||||||| || |||| ||||||||||| Sbjct: 633 actacgtgctgaggagataccagaggaagagaagaaccttggcccacatgatcggttgat 692 Query: 122 tcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttggaga 181 ||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 693 tcatgtttaccatttcatgaaagatcctaatcaaaatcagcagattcagaattttggaga 752 Query: 182 tccctttttgctggttatccgtgaaggcgagaccgctgcagaggtaatggaccgtgtgca 241 ||| ||||||||||||||||||||||| || || || |||||| || | || || | || Sbjct: 753 tccatttttgctggttatccgtgaaggtgaaactgcagcagagatattagaacgaattca 812 Query: 242 gaaaaaactccgagttcccaatgaagaattcgccaagtggaaggctgcattcatatccat 301 ||||||||| |||||||| |||| |||||| ||||||||||| |||||||||||| || Sbjct: 813 gaaaaaacttcgagttcctgatgaggaattctccaagtggaagcttgcattcatatctat 872 Query: 302 gaatcgtccagaatacctccaggatattgatgctgtgtctgcacgttttcagaggagaga 361 |||||| || ||||||||||||||| | || | ||| ||||||||||||||||||||||| Sbjct: 873 gaatcggcctgaatacctccaggatgtcgacgttgtatctgcacgttttcagaggagaga 932 Query: 362 tgtttatggagcttgggaacaataccttggcttggagcatactgacacaacacccaaaag 421 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 933 tgtttatggagcttgggaacaataccttggcttggaacatactgacacaacaccaaaaag 992 Query: 422 gtcatacacagctaatcagaatcgacacacatatgagaagcctgtgaagatctacaattg 481 ||| || ||||| ||||||||||| ||||| | ||||||||||||||| || || ||||| Sbjct: 993 gtcttatacagccaatcagaatcgtcacacttttgagaagcctgtgaaaatttataattg 1052 Query: 482 agaa 485 |||| Sbjct: 1053 agaa 1056
>gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65 mRNA sequence Length = 741 Score = 442 bits (223), Expect = e-121 Identities = 379/431 (87%) Strand = Plus / Plus Query: 55 actggacactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatc 114 ||||||||||||||||||||||||| |||||||| |||||||| || | || |||| Sbjct: 1 actggacactacgtgctgaggagataccagaggaagagaagaaccttggccctcatgatc 60 Query: 115 ggttgattcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaatt 174 |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 61 ggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcagcagattcagaatt 120 Query: 175 ttggagatccctttttgctggttatccgtgaaggcgagaccgctgcagaggtaatggacc 234 |||||||||| ||||||||||||||||||||||| || || || |||||| || | || | Sbjct: 121 ttggagatccatttttgctggttatccgtgaaggtgaaactgcagcagagatattagaac 180 Query: 235 gtgtgcagaaaaaactccgagttcccaatgaagaattcgccaagtggaaggctgcattca 294 | | ||||||||||| |||||||| |||| |||||| ||||||||||| |||||||| Sbjct: 181 gaattcagaaaaaacttcgagttcctgatgaggaattctccaagtggaagcttgcattca 240 Query: 295 tatccatgaatcgtccagaatacctccaggatattgatgctgtgtctgcacgttttcaga 354 |||| |||||||| || ||||||||||||||| | || | ||| |||||||||||||||| Sbjct: 241 tatctatgaatcggcctgaatacctccaggatgtcgacgttgtatctgcacgttttcaga 300 Query: 355 ggagagatgtttatggagcttgggaacaataccttggcttggagcatactgacacaacac 414 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 301 ggagagatgtttatggagcttgggaacaataccttggcttggaacatactgacacaacac 360 Query: 415 ccaaaaggtcatacacagctaatcagaatcgacacacatatgagaagcctgtgaagatct 474 | |||||||| || ||||| ||||||||||| ||||| | ||||||||||||||| || | Sbjct: 361 caaaaaggtcttatacagccaatcagaatcgtcacacttttgagaagcctgtgaaaattt 420 Query: 475 acaattgagaa 485 | ||||||||| Sbjct: 421 ataattgagaa 431
>gb|BT016292.1| Zea mays clone Contig125 mRNA sequence Length = 1106 Score = 424 bits (214), Expect = e-115 Identities = 421/490 (85%) Strand = Plus / Plus Query: 2 gatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactggac 61 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 gatttataagatctttccacctcatgagaagatagagaacataaatgatcagtactggac 206 Query: 62 actacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttgat 121 | |||| ||||||||||| |||||||| ||||||||||| |||| ||||| ||||| Sbjct: 207 attacgagctgaggagatcccagaggaagagaagaatcttggcccacatgatcgattgat 266 Query: 122 tcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttggaga 181 ||| || || |||||||||||||| || || |||||||| || ||||| ||||| ||||| Sbjct: 267 tcatgtttaccatttcatgaaagacccgaaccagaatcaacaaattcaaaatttcggaga 326 Query: 182 tccctttttgctggttatccgtgaaggcgagaccgctgcagaggtaatggaccgtgtgca 241 ||| |||||| ||||||| || ||||| ||||| ||||||||||||||||| || | || Sbjct: 327 tccttttttgatggttattcgggaaggtgagactgctgcagaggtaatggagcgcatcca 386 Query: 242 gaaaaaactccgagttcccaatgaagaattcgccaagtggaaggctgcattcatatccat 301 || |||||| ||||||| |||| || ||| ||||||||||| ||||||||||||||| Sbjct: 387 gagaaaacttagagttcctgatgatgagttctccaagtggaagcttgcattcatatccat 446 Query: 302 gaatcgtccagaatacctccaggatattgatgctgtgtctgcacgttttcagaggagaga 361 ||| || ||||| ||||||||||| | ||| | ||| || |||||||||||| ||||||| Sbjct: 447 gaaccggccagagtacctccaggacactgacgttgtatcagcacgttttcagcggagaga 506 Query: 362 tgtttatggagcttgggaacaataccttggcttggagcatactgacacaacacccaaaag 421 ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| | ||| | Sbjct: 507 tgtatatggtgcttgggaacaataccttggcttggagcacactgatacaacatcgaaacg 566 Query: 422 gtcatacacagctaatcagaatcgacacacatatgagaagcctgtgaagatctacaattg 481 ||| |||||| | ||||||||||| ||||| ||||||||||| || || || || ||||| Sbjct: 567 gtcttacacatccaatcagaatcggcacacctatgagaagcccgtaaaaatttataattg 626 Query: 482 agaaaccttc 491 |||||||||| Sbjct: 627 agaaaccttc 636
>gb|AY104559.1| Zea mays PCO133879 mRNA sequence Length = 962 Score = 408 bits (206), Expect = e-111 Identities = 386/446 (86%) Strand = Plus / Plus Query: 41 cataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaatct 100 |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 14 cataaatgatcagtactggacattacgagctgaggagattccagaggaagagaagaatct 73 Query: 101 cactgcacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatca 160 |||| || || |||||||| || |||||||| |||||||| |||||||||||||| Sbjct: 74 tggcccacatgaccgtttgattcatgtttatcattttatgaaagaccctaatcagaatca 133 Query: 161 gcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagaccgctgc 220 ||||||||||||||| |||||||| |||||| ||||||||||||||| ||||| ||||| Sbjct: 134 gcagattcagaatttcggagatccttttttgatggttatccgtgaagttgagactgctgc 193 Query: 221 agaggtaatggaccgtgtgcagaaaaaactccgagttcccaatgaagaattcgccaagtg 280 ||||||| |||| || | || | |||||| ||||||| |||| || ||| ||||||| Sbjct: 194 agaggtactggagcgcatccaaagaaaacttagagttccggatgaggacttctccaagtg 253 Query: 281 gaaggctgcattcatatccatgaatcgtccagaatacctccaggatattgatgctgtgtc 340 |||| |||||||||||||||||| || ||||| ||||||||||| | ||||| ||| || Sbjct: 254 gaagcttgcattcatatccatgaaccggccagagtacctccaggacactgatgttgtatc 313 Query: 341 tgcacgttttcagaggagagatgtttatggagcttgggaacaataccttggcttggagca 400 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 314 agcacgttttcagaggagagatgtatatggtgcttgggaacaataccttggcttggagca 373 Query: 401 tactgacacaacacccaaaaggtcatacacagctaatcagaatcgacacacatatgagaa 460 || || |||||| | |||||||| |||||||| ||||||||||| ||||| |||||||| Sbjct: 374 caccgatacaacatcgaaaaggtcttacacagccaatcagaatcggcacacctatgagaa 433 Query: 461 gcctgtgaagatctacaattgagaaa 486 ||| ||||| || || |||||||||| Sbjct: 434 gcccgtgaaaatttataattgagaaa 459
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full insert sequence Length = 3975 Score = 319 bits (161), Expect = 6e-84 Identities = 398/477 (83%) Strand = Plus / Plus Query: 6 tataagatatttccacctcatgagaagatagagaacataaatgatcagtactggacacta 65 |||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 2872 tataagatttttccactccatgagaagatagagaatattaatgatcagtactggacacta 2931 Query: 66 cgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttgattcac 125 ||||||||||||||||||||||||||||| |||||| | || | |||||||| ||||| Sbjct: 2932 cgtgctgaggagattccagaggaggagaaaaatctcggtccaaatgatcggttaattcat 2991 Query: 126 gtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttggagatccc 185 || ||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||| Sbjct: 2992 gtttatcacttcatgaaagaccctcttcagaatcagcagattcagaactttggagatcct 3051 Query: 186 tttttgctggttatccgtgaaggcgagaccgctgcagaggtaatggaccgtgtgcagaaa 245 |||| || | |||||||||||| ||||| ||||| |||| ||| || | |||||| Sbjct: 3052 ttttatcttgctatccgtgaaggtgagactttagcagaagtaaaggagcgcatacagaaa 3111 Query: 246 aaactccgagttcccaatgaagaattcgccaagtggaaggctgcattcatatccatgaat 305 ||||||| ||| || |||| |||||| ||||||||| || |||||||||||||| Sbjct: 3112 aaactccaagtccctgatgaggaattctgcaagtggaaattcgctttcatatccatgaac 3171 Query: 306 cgtccagaatacctccaggatattgatgctgtgtctgcacgttttcagaggagagatgtt 365 || ||||| |||||||| ||| |||| ||| ||||| ||||| |||||||||||||| Sbjct: 3172 cggccagattacctccaagattcagatgttgtatctgcccgtttccagaggagagatgtc 3231 Query: 366 tatggagcttgggaacaataccttggcttggagcatactgacacaacacccaaaaggtca 425 |||||||| ||||| || || ||||| ||||||||| |||| || |||| |||||| | Sbjct: 3232 tatggagcctgggagcagtatcttggtttggagcatgctgatactgcaccaaaaagggcc 3291 Query: 426 tacacagctaatcagaatcgacacacatatgagaagcctgtgaagatctacaattga 482 |||||||| |||||||| || ||||| ||||||||||| |||| || ||||||||| Sbjct: 3292 tacacagccaatcagaaccgtcacacctatgagaagccagtgagaatttacaattga 3348
>dbj|AK059481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F05, full insert sequence Length = 1098 Score = 319 bits (161), Expect = 6e-84 Identities = 398/477 (83%) Strand = Plus / Plus Query: 6 tataagatatttccacctcatgagaagatagagaacataaatgatcagtactggacacta 65 |||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 35 tataagatttttccactccatgagaagatagagaatattaatgatcagtactggacacta 94 Query: 66 cgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttgattcac 125 ||||||||||||||||||||||||||||| |||||| | || | |||||||| ||||| Sbjct: 95 cgtgctgaggagattccagaggaggagaaaaatctcggtccaaatgatcggttaattcat 154 Query: 126 gtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttggagatccc 185 || ||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||| Sbjct: 155 gtttatcacttcatgaaagaccctcttcagaatcagcagattcagaactttggagatcct 214 Query: 186 tttttgctggttatccgtgaaggcgagaccgctgcagaggtaatggaccgtgtgcagaaa 245 |||| || | |||||||||||| ||||| ||||| |||| ||| || | |||||| Sbjct: 215 ttttatcttgctatccgtgaaggtgagactttagcagaagtaaaggagcgcatacagaaa 274 Query: 246 aaactccgagttcccaatgaagaattcgccaagtggaaggctgcattcatatccatgaat 305 ||||||| ||| || |||| |||||| ||||||||| || |||||||||||||| Sbjct: 275 aaactccaagtccctgatgaggaattctgcaagtggaaattcgctttcatatccatgaac 334 Query: 306 cgtccagaatacctccaggatattgatgctgtgtctgcacgttttcagaggagagatgtt 365 || ||||| |||||||| ||| |||| ||| ||||| ||||| |||||||||||||| Sbjct: 335 cggccagattacctccaagattcagatgttgtatctgcccgtttccagaggagagatgtc 394 Query: 366 tatggagcttgggaacaataccttggcttggagcatactgacacaacacccaaaaggtca 425 |||||||| ||||| || || ||||| ||||||||| |||| || |||| |||||| | Sbjct: 395 tatggagcctgggagcagtatcttggtttggagcatgctgatactgcaccaaaaagggcc 454 Query: 426 tacacagctaatcagaatcgacacacatatgagaagcctgtgaagatctacaattga 482 |||||||| |||||||| || ||||| ||||||||||| |||| || ||||||||| Sbjct: 455 tacacagccaatcagaaccgtcacacctatgagaagccagtgagaatttacaattga 511
>gb|AY104649.1| Zea mays PCO133877 mRNA sequence Length = 927 Score = 252 bits (127), Expect = 1e-63 Identities = 205/231 (88%) Strand = Plus / Plus Query: 2 gatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactggac 61 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 gatttataagatctttccacctcatgagaagatagagaacataaatgatcagtactggac 720 Query: 62 actacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttgat 121 | |||| ||||||||||| |||||||| ||||||||||| | |||| ||||| ||||| Sbjct: 721 attacgagctgaggagatcccagaggaagagaagaatcttggtccacatgatcgattgat 780 Query: 122 tcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttggaga 181 ||| || || |||||||||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 781 tcatgtttaccatttcatgaaagaccctaaccagaatcaacaaattcaaaatttcggaga 840 Query: 182 tccctttttgctggttatccgtgaaggcgagaccgctgcagaggtaatgga 232 ||| |||||| ||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 841 tccttttttgatggttattcgggaaggtgagactgctgcagaggtaatgga 891
>dbj|AK058717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E02, full insert sequence Length = 650 Score = 180 bits (91), Expect = 4e-42 Identities = 124/135 (91%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgacaca 410 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1 cagaggagagatgtttatggagcttgggaacaataccttggcttggaacatactgacaca 60 Query: 411 acacccaaaaggtcatacacagctaatcagaatcgacacacatatgagaagcctgtgaag 470 ||||| |||||||| || ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct: 61 acaccaaaaaggtcttatacagccaatcagaatcgtcacacttttgagaagcctgtgaaa 120 Query: 471 atctacaattgagaa 485 || || ||||||||| Sbjct: 121 atttataattgagaa 135
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgacaca 410 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 18388074 cagaggagagatgtttatggagcttgggaacaataccttggcttggaacatactgacaca 18388133 Query: 411 acacccaaaaggtcatacacagctaatcag 440 ||||| |||||||| || ||||| |||||| Sbjct: 18388134 acaccaaaaaggtcttatacagccaatcag 18388163 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18386672 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 18386731 Query: 70 ctgaggag 77 |||||||| Sbjct: 18386732 ctgaggag 18386739 Score = 103 bits (52), Expect = 7e-19 Identities = 103/120 (85%) Strand = Plus / Plus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagaccgct 218 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || || Sbjct: 18387077 cagcagattcagaattttggagatccatttttgctggttatccgtgaaggtgaaactgca 18387136 Query: 219 gcagaggtaatggaccgtgtgcagaaaaaactccgagttcccaatgaagaattcgccaag 278 |||||| || | || || | ||||||||||| |||||||| |||| |||||| ||||| Sbjct: 18387137 gcagagatattagaacgaattcagaaaaaacttcgagttcctgatgaggaattctccaag 18387196 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 277 agtggaaggctgcattcatatccatgaatcgtccagaatacctccaggatattgatgctg 336 |||||||| |||||||||||| |||||||| || ||||||||||||||| | || | || Sbjct: 18387898 agtggaagcttgcattcatatctatgaatcggcctgaatacctccaggatgtcgacgttg 18387957 Query: 337 tgtctgcacgttttcag 353 | ||||||||||||||| Sbjct: 18387958 tatctgcacgttttcag 18387974 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 106 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 161 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 18386881 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 18386936 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 438 cagaatcgacacacatatgagaagcctgtgaagatctacaattgagaa 485 |||||||| ||||| | ||||||||||||||| || || ||||||||| Sbjct: 18389559 cagaatcgtcacacttttgagaagcctgtgaaaatttataattgagaa 18389606 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gtaatggaccgtgtgcagaaa 245 ||||||||||||||||||||| Sbjct: 6515702 gtaatggaccgtgtgcagaaa 6515682
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgacaca 410 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 18314300 cagaggagagatgtttatggagcttgggaacaataccttggcttggaacatactgacaca 18314359 Query: 411 acacccaaaaggtcatacacagctaatcag 440 ||||| |||||||| || ||||| |||||| Sbjct: 18314360 acaccaaaaaggtcttatacagccaatcag 18314389 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18312898 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 18312957 Query: 70 ctgaggag 77 |||||||| Sbjct: 18312958 ctgaggag 18312965 Score = 103 bits (52), Expect = 7e-19 Identities = 103/120 (85%) Strand = Plus / Plus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagaccgct 218 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || || Sbjct: 18313303 cagcagattcagaattttggagatccatttttgctggttatccgtgaaggtgaaactgca 18313362 Query: 219 gcagaggtaatggaccgtgtgcagaaaaaactccgagttcccaatgaagaattcgccaag 278 |||||| || | || || | ||||||||||| |||||||| |||| |||||| ||||| Sbjct: 18313363 gcagagatattagaacgaattcagaaaaaacttcgagttcctgatgaggaattctccaag 18313422 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 277 agtggaaggctgcattcatatccatgaatcgtccagaatacctccaggatattgatgctg 336 |||||||| |||||||||||| |||||||| || ||||||||||||||| | || | || Sbjct: 18314124 agtggaagcttgcattcatatctatgaatcggcctgaatacctccaggatgtcgacgttg 18314183 Query: 337 tgtctgcacgttttcag 353 | ||||||||||||||| Sbjct: 18314184 tatctgcacgttttcag 18314200 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 106 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 161 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 18313107 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 18313162 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 438 cagaatcgacacacatatgagaagcctgtgaagatctacaattgagaa 485 |||||||| ||||| | ||||||||||||||| || || ||||||||| Sbjct: 18315785 cagaatcgtcacacttttgagaagcctgtgaaaatttataattgagaa 18315832 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gtaatggaccgtgtgcagaaa 245 ||||||||||||||||||||| Sbjct: 6515577 gtaatggaccgtgtgcagaaa 6515557
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgacaca 410 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 39973 cagaggagagatgtttatggagcttgggaacaataccttggcttggaacatactgacaca 40032 Query: 411 acacccaaaaggtcatacacagctaatcag 440 ||||| |||||||| || ||||| |||||| Sbjct: 40033 acaccaaaaaggtcttatacagccaatcag 40062 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 38571 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 38630 Query: 70 ctgaggag 77 |||||||| Sbjct: 38631 ctgaggag 38638 Score = 103 bits (52), Expect = 7e-19 Identities = 103/120 (85%) Strand = Plus / Plus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagaccgct 218 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || || Sbjct: 38976 cagcagattcagaattttggagatccatttttgctggttatccgtgaaggtgaaactgca 39035 Query: 219 gcagaggtaatggaccgtgtgcagaaaaaactccgagttcccaatgaagaattcgccaag 278 |||||| || | || || | ||||||||||| |||||||| |||| |||||| ||||| Sbjct: 39036 gcagagatattagaacgaattcagaaaaaacttcgagttcctgatgaggaattctccaag 39095 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 277 agtggaaggctgcattcatatccatgaatcgtccagaatacctccaggatattgatgctg 336 |||||||| |||||||||||| |||||||| || ||||||||||||||| | || | || Sbjct: 39797 agtggaagcttgcattcatatctatgaatcggcctgaatacctccaggatgtcgacgttg 39856 Query: 337 tgtctgcacgttttcag 353 | ||||||||||||||| Sbjct: 39857 tatctgcacgttttcag 39873 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 106 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 161 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 38780 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 38835 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 438 cagaatcgacacacatatgagaagcctgtgaagatctacaattgagaa 485 |||||||| ||||| | ||||||||||||||| || || ||||||||| Sbjct: 41458 cagaatcgtcacacttttgagaagcctgtgaaaatttataattgagaa 41505
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 84227 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 84168 Query: 70 ctgaggag 77 |||||||| Sbjct: 84167 ctgaggag 84160 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 349 ttcagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgaca 408 |||||||||||||||| |||||||| ||||| || || ||||| ||||||||| |||| | Sbjct: 83089 ttcagaggagagatgtctatggagcctgggagcagtatcttggtttggagcatgctgata 83030 Query: 409 caacacccaaaaggtcatacacagctaatcag 440 | |||| |||||| | |||||||| |||||| Sbjct: 83029 ctgcaccaaaaagggcctacacagccaatcag 82998 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 76 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 135 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 84025 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 83966 Query: 136 tcatgaaagatcctaatcagaatcag 161 |||||||||| ||| |||||||||| Sbjct: 83965 tcatgaaagaccctcttcagaatcag 83940 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagac 214 |||||||||||||| ||||||||||| |||| || | |||||||||||| ||||| Sbjct: 83832 cagcagattcagaactttggagatcctttttatcttgctatccgtgaaggtgagac 83777 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 ttcatatccatgaatcgtccagaatacctcca 322 |||||||||||||| || ||||| |||||||| Sbjct: 83243 ttcatatccatgaaccggccagattacctcca 83212
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 20649219 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 20649160 Query: 70 ctgaggag 77 |||||||| Sbjct: 20649159 ctgaggag 20649152 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 349 ttcagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgaca 408 |||||||||||||||| |||||||| ||||| || || ||||| ||||||||| |||| | Sbjct: 20648081 ttcagaggagagatgtctatggagcctgggagcagtatcttggtttggagcatgctgata 20648022 Query: 409 caacacccaaaaggtcatacacagctaatcag 440 | |||| |||||| | |||||||| |||||| Sbjct: 20648021 ctgcaccaaaaagggcctacacagccaatcag 20647990 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 76 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 135 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 20649017 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 20648958 Query: 136 tcatgaaagatcctaatcagaatcag 161 |||||||||| ||| |||||||||| Sbjct: 20648957 tcatgaaagaccctcttcagaatcag 20648932 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagac 214 |||||||||||||| ||||||||||| |||| || | |||||||||||| ||||| Sbjct: 20648824 cagcagattcagaactttggagatcctttttatcttgctatccgtgaaggtgagac 20648769 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 ttcatatccatgaatcgtccagaatacctcca 322 |||||||||||||| || ||||| |||||||| Sbjct: 20648235 ttcatatccatgaaccggccagattacctcca 20648204
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 69 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 20959454 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 20959395 Query: 70 ctgaggag 77 |||||||| Sbjct: 20959394 ctgaggag 20959387 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 349 ttcagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgaca 408 |||||||||||||||| |||||||| ||||| || || ||||| ||||||||| |||| | Sbjct: 20958316 ttcagaggagagatgtctatggagcctgggagcagtatcttggtttggagcatgctgata 20958257 Query: 409 caacacccaaaaggtcatacacagctaatcag 440 | |||| |||||| | |||||||| |||||| Sbjct: 20958256 ctgcaccaaaaagggcctacacagccaatcag 20958225 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 76 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 135 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 20959252 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 20959193 Query: 136 tcatgaaagatcctaatcagaatcag 161 |||||||||| ||| |||||||||| Sbjct: 20959192 tcatgaaagaccctcttcagaatcag 20959167 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagac 214 |||||||||||||| ||||||||||| |||| || | |||||||||||| ||||| Sbjct: 20959059 cagcagattcagaactttggagatcctttttatcttgctatccgtgaaggtgagac 20959004 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 ttcatatccatgaatcgtccagaatacctcca 322 |||||||||||||| || ||||| |||||||| Sbjct: 20958470 ttcatatccatgaaccggccagattacctcca 20958439
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 25 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggagattccag 84 |||| |||||||| ||||| ||||||||||||||||| || ||||| |||||| |||| | Sbjct: 2897 atgaaaagatagaaaacatcaatgatcagtactggaccctgcgtgcagaggaggttccgg 2956 Query: 85 aggaggagaagaatct 100 |||| ||||| ||||| Sbjct: 2957 aggaagagaaaaatct 2972 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 366 tatggagcttgggaacaataccttggcttggagcat 401 |||||||||||||| ||||| ||||| |||||||| Sbjct: 3235 tatggagcttgggagcaatatcttggactggagcat 3270
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactgaca 408 ||||| |||||||||||||| |||||||| || || ||||| |||||||||||||||| Sbjct: 76979 cagagaagagatgtttatggtgcttgggagcagtatcttggtttggagcatactgaca 76922 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 159 cagcagattcagaattttggagatccctttttgctggttatccgtgaaggcgagac 214 ||||| |||||||| ||||| || |||||||| |||| || |||||||||||||| Sbjct: 77434 cagcaaattcagaactttggggaaccctttttcttggtcatacgtgaaggcgagac 77379 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 41 cataaatgatcagtactggacactacgtgctgaggag 77 |||||||||||| ||||||||| | ||||| |||||| Sbjct: 77862 cataaatgatcaatactggacattgcgtgcagaggag 77826
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete sequence Length = 141216 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 10 agatatttccacctcatgagaagatagagaacataaatgatcagtactggaca 62 ||||||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 42975 agatatttccaacaagtgagaagatagagaacataaatgaccagtactggaca 43027 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 360 gatgtttatggagcttgggaacaataccttggcttggagcatactgaca 408 ||||||||||| |||||||| || || ||||||||||| ||| |||||| Sbjct: 45107 gatgtttatggtgcttgggagcagtatcttggcttggaacattctgaca 45155
>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.1 mRNA, complete cds Length = 3898 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 95 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3014 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3073 Query: 96 aat 98 ||| Sbjct: 3074 aat 3076
>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.2 mRNA, complete cds Length = 3897 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 95 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3013 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3072 Query: 96 aat 98 ||| Sbjct: 3073 aat 3075
>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3379 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 95 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 2902 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 2961 Query: 96 aat 98 ||| Sbjct: 2962 aat 2964
>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 95 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3013 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3072 Query: 96 aat 98 ||| Sbjct: 3073 aat 3075
>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA, complete cds Length = 3427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 95 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 2941 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3000 Query: 96 aat 98 ||| Sbjct: 3001 aat 3003
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 25 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 77 |||| |||||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct: 3453515 atgaaaagatagaaaacatcaatgatcagtactggaccctgcgtgcagaggag 3453567 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 366 tatggagcttgggaacaataccttggcttggagcat 401 |||||||||||||| ||||| ||||| |||||||| Sbjct: 3455921 tatggagcttgggagcaatatcttggactggagcat 3455956
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 25 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 77 |||| |||||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct: 93335 atgaaaagatagaaaacatcaatgatcagtactggaccctgcgtgcagaggag 93387 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 366 tatggagcttgggaacaataccttggcttggagcat 401 |||||||||||||| ||||| ||||| |||||||| Sbjct: 95741 tatggagcttgggagcaatatcttggactggagcat 95776
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatggagcttgggaacaataccttggcttggagcatactga 406 ||||| ||||| || ||||| |||||||| || || |||||||||||||||||||| Sbjct: 5199 cagagaagagacgtatatggtgcttgggagcagtatcttggcttggagcatactga 5254 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 25 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 77 |||| ||||| || ||||||||||| || |||||||||||||| || |||||| Sbjct: 4306 atgaaaagattgaaaacataaatgaccaatactggacactacgagccgaggag 4358
>gb|AY111375.1| Zea mays CL38709_1 mRNA sequence Length = 1037 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 49 atcagtactggacactacgtgctgaggagattccagaggaggag 92 |||||||||||||||| ||||| |||||| ||||||| |||||| Sbjct: 1037 atcagtactggacactgcgtgcggaggaggttccagatgaggag 994
>emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chromosome 9 Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene, complete sequence Length = 112031 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 gagaagaatctcactgcacagg 111 |||||||||||||||||||||| Sbjct: 19954 gagaagaatctcactgcacagg 19933
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7 Length = 74350 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 36 gagaacataaatgatcagtactggacactacgtgctgaggag 77 ||||| |||||||| ||||||||||| |||| ||||||||| Sbjct: 45338 gagaatataaatgaccagtactggactttacgagctgaggag 45297
>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2 Contains a CpG island, complete sequence Length = 175384 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 cagattcagaattttggagat 182 ||||||||||||||||||||| Sbjct: 91704 cagattcagaattttggagat 91724
>emb|AL662883.8| Mouse DNA sequence from clone RP23-195I1 on chromosome 11, complete sequence Length = 38413 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 agaagatagagaacataaatg 48 ||||||||||||||||||||| Sbjct: 5765 agaagatagagaacataaatg 5745
>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete sequences Length = 159372 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 583 tcaaatatatggtcatttgtg 603 ||||||||||||||||||||| Sbjct: 82796 tcaaatatatggtcatttgtg 82776
>emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa0096K13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138508 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 gtaatggaccgtgtgcagaaa 245 ||||||||||||||||||||| Sbjct: 68842 gtaatggaccgtgtgcagaaa 68822
>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease AT3G11910 mRNA, complete cds Length = 3813 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 39 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 98 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 3000 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 3059
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gagaagatagagaacataaa 46 |||||||||||||||||||| Sbjct: 183090 gagaagatagagaacataaa 183071
>gb|AC154583.3| Mus musculus BAC clone RP23-248H18 from chromosome 13, complete sequence Length = 191052 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cagaatcgacacacatatga 457 |||||||||||||||||||| Sbjct: 154067 cagaatcgacacacatatga 154048
>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence Length = 133137 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 atattgatgctgtgtctgca 344 |||||||||||||||||||| Sbjct: 93294 atattgatgctgtgtctgca 93275
>emb|AL606828.4| Human DNA sequence from clone RP11-20J6 on chromosome 6, complete sequence Length = 33887 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cacccaaaaggtcatacaca 431 |||||||||||||||||||| Sbjct: 19128 cacccaaaaggtcatacaca 19147
>emb|AL591416.4| Human DNA sequence from clone RP11-108N13 on chromosome 6 Contains a ribosomal protein L6 (RPL6) pseudogene and the 5' end of a novel gene, complete sequence Length = 157068 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 aggatattgatgctgtgtct 341 |||||||||||||||||||| Sbjct: 36518 aggatattgatgctgtgtct 36537
>emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chromosome 9p23-24.3 Contains the RLN1 gene for relaxin 1(H1) (RLXH1),the RLN2 gene for relaxin 2 (H2) (RLXH2), a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene, a novel pseudogene, the gene for uncharacterized hematopoietic stem/progenitor cells protein (MDS030), a novel pseudogene (FLJ39176) and four CpG islands, complete sequence Length = 156592 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 aagatcctaatcagaatcagcaga 165 ||||| |||||||||||||||||| Sbjct: 81185 aagattctaatcagaatcagcaga 81208
>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence Length = 4231 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 39 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 98 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 3492 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 3551
>gb|U61850.2|GGU61850 Gallus gallus m2 muscarinic acetylcholine receptor gene, promoter region and exon 1 Length = 3175 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 tcatttgtgtgccaaggtct 614 |||||||||||||||||||| Sbjct: 837 tcatttgtgtgccaaggtct 856
>emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chromosome 11 Contains part of the gene for a novel protein (C230094A16Rik), the gene for a novel protein (4931440F15Rik) similar to Mus musculus feminization 1 homolog a (C. elegans) (Fem1a), a ribosomal protein L23 (Rpl23) pseudogene, a preferentially expressed antigen in melanoma like 5 (Pramel5) pseudogene and a CpG island, complete sequence Length = 193116 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 ttcagaattttggagatccctttt 189 ||||||||||||||| |||||||| Sbjct: 30885 ttcagaattttggagttccctttt 30862
>gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165318 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cacccaaaaggtcatacaca 431 |||||||||||||||||||| Sbjct: 79483 cacccaaaaggtcatacaca 79502
>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin carboxyl-terminal hydrolase (At3g11910) mRNA, complete cds Length = 3379 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 39 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 98 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 2905 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 2964
>gb|AC158181.2| Selaginella moellendorffii clone JGIASXY-5D1, complete sequence Length = 34893 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aagcctgtgaagatctacaa 478 |||||||||||||||||||| Sbjct: 4124 aagcctgtgaagatctacaa 4143
>gb|AC156454.2| Volvox carteri clone JGIAOBO-9I12, complete sequence Length = 36564 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 agcatactgacacaacaccc 416 |||||||||||||||||||| Sbjct: 15682 agcatactgacacaacaccc 15663
>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete sequence Length = 271869 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cacccaaaaggtcatacaca 431 |||||||||||||||||||| Sbjct: 187934 cacccaaaaggtcatacaca 187953
>gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromosome unknown, complete sequence Length = 163279 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 ctgagaaagtgtgctaaaga 550 |||||||||||||||||||| Sbjct: 159588 ctgagaaagtgtgctaaaga 159569
>emb|AJ639769.1| Psidium guajava microsatellite DNA, clone mPgCIR20 Length = 351 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cagaggagagatgtttatgg 370 |||||||||||||||||||| Sbjct: 324 cagaggagagatgtttatgg 343
>emb|CT571278.3| Mouse DNA sequence from clone RP24-372E22 on chromosome 13, complete sequence Length = 47954 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 cagaatcgacacacatatga 457 |||||||||||||||||||| Sbjct: 23281 cagaatcgacacacatatga 23300
>gb|AC164881.2| Mus musculus BAC clone RP23-246D7 from chromosome 9, complete sequence Length = 201645 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aagatatttccacctcatga 28 |||||||||||||||||||| Sbjct: 188071 aagatatttccacctcatga 188090 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,896,661 Number of Sequences: 3902068 Number of extensions: 5896661 Number of successful extensions: 118308 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117979 Number of HSP's gapped (non-prelim): 318 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
