ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106456.1| Zea mays PCO087051 mRNA sequence Length = 1356 Score = 563 bits (284), Expect = e-157 Identities = 542/628 (86%) Strand = Plus / Plus Query: 24 cgatcaaactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttcctt 83 ||||| ||||||||||||||||| ||||||||||| ||||| || || |||||||||||| Sbjct: 74 cgatctaactacctaatgaatacgagcattgctgggcttgaaaaggctgatgtcttcctt 133 Query: 84 ttggttggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagact 143 |||||||| || ||||| |||||||||||||||||||| || || ||||||| ||||||| Sbjct: 134 ttggttggcactcagccaagggtggaagctgctatggttaacgccaggattcggaagact 193 Query: 144 gttagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgac 203 |||| |||||||||||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 194 gttaaagcaacacaagcaaaggttgggtacattggtcctccagctgactttaactatgac 253 Query: 204 actcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatcct 263 | | |||||||||||||| ||| |||||||||||||||| | ||||| || |||||| Sbjct: 254 catgaacatcttggcacaggaccacagacccttgttgagattacagagggtcgtcatcct 313 Query: 264 ttctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttattt 323 ||||| ||| |||| | ||||| |||||||| || ||||| ||||||||||| |||||| Sbjct: 314 ttctgttcagtactgcaatctgccaagaaccctgtcatcattgctggagctggattattt 373 Query: 324 gaacgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaat 383 |||||||||||||||| ||| | ||||||| ||||| ||||||||||||| |||||| Sbjct: 374 gaacgggaagaccaagatgccctattctcaatgattgagactgtagccaagaggttcaat 433 Query: 384 gtgacgagaccagactggaatggcctcaatgtcctattgctccatgctgcacaggccgca 443 ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 434 gtgactagaccagactggaatggccttaatgtcctgttgctccatgctgcacaggctgca 493 Query: 444 gctcttgatctgggcctcgtcgctaatcctacggagagcgtcaagtctgccaagttcctt 503 ||||||||||| || || || ||||||||| | |||||| ||||||| || |||||| | Sbjct: 494 gctcttgatcttgggcttgttgctaatcctgccgagagcatcaagtcagcaaagttcttg 553 Query: 504 tacctgatgggagccgacgatatcaacttggacaaccttccagcggatgcatttgttgtt 563 || ||||||||||| || ||||| | | ||||||| ||||||| ||||||||||||||| Sbjct: 554 tatctgatgggagctgatgatataagcctggacaagcttccagacgatgcatttgttgtt 613 Query: 564 taccaggggcaccatggtgacaaggctgtgtacagggccaatgttattctgccgtcttca 623 || || || |||||||||||||||||||| || |||||||| ||||| ||||| |||||| Sbjct: 614 tatcaaggacaccatggtgacaaggctgtctatagggccaacgttatcctgccatcttca 673 Query: 624 gcatttagcgagaaagagggcacctacg 651 ||||| || ||||| || |||||||||| Sbjct: 674 gcattcagtgagaaggaaggcacctacg 701
>ref|XM_469533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 492 bits (248), Expect = e-136 Identities = 527/620 (85%) Strand = Plus / Plus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 1276 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 1335 Query: 90 ggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagactgttaga 149 ||||| ||||| || || |||||||||||||| |||||||| || | ||||||||||||| Sbjct: 1336 ggtacacagccaagagttgaagctgctatggttaatgcaagaatccggaagactgttaga 1395 Query: 150 gcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgacactcag 209 || |||||||| ||||| | || ||||| |||| | ||||||||||||||| | || Sbjct: 1396 gcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgaccatgag 1455 Query: 210 catcttggcacagggccagagacccttgttgagatagctgagggccggcatcctttctgc 269 ||||||||||| || ||| | |||||||||||||| || ||||| |||||||| ||||| Sbjct: 1456 catcttggcactggaccacaaacccttgttgagattgcagagggtcggcatcccttctgt 1515 Query: 270 tcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttatttgaacgg 329 |||| || ||||||| ||||| || || ||||| ||||| || ||||||||||| ||| Sbjct: 1516 tcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttatttgaccgg 1575 Query: 330 gaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaatgtgacg 389 |||||||||| ||| | |||||||| || || ||||||||||| |||||||||||| Sbjct: 1576 gaagaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaatgtggtt 1635 Query: 390 agaccagactggaatggcctcaatgtcctattgctccatgctgcacaggccgcagctctt 449 |||||||||||||| || || ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 1636 agaccagactggaacgggcttaatgttctattgctgcatgctgcacaagctgcagcgctt 1695 Query: 450 gatctgggcctcgtcgctaatcctacggagagcgtcaagtctgccaagttcctttacctg 509 ||||| || || || ||||||||||| |||||| ||||||| | ||||| || || ||| Sbjct: 1696 gatcttggtcttgttgctaatcctacagagagcatcaagtccacaaagtttctgtatctg 1755 Query: 510 atgggagccgacgatatcaacttggacaaccttccagcggatgcatttgttgtttaccag 569 |||||||| || ||| | |||||||||| |||| | ||||||||||||||||||||| Sbjct: 1756 atgggagctgatgatgtagacttggacaaggttccggatgatgcatttgttgtttaccag 1815 Query: 570 gggcaccatggtgacaaggctgtgtacagggccaatgttattctgccgtcttcagcattt 629 || ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 1816 ggacaccatggtgacaaggctgtgtatagggccaatgttatcctgccatcatcagcattc 1875 Query: 630 agcgagaaagagggcaccta 649 ||||||||||| |||||||| Sbjct: 1876 agcgagaaagaaggcaccta 1895
>dbj|AK071307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M21, full insert sequence Length = 2518 Score = 492 bits (248), Expect = e-136 Identities = 527/620 (85%) Strand = Plus / Plus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 1364 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 1423 Query: 90 ggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagactgttaga 149 ||||| ||||| || || |||||||||||||| |||||||| || | ||||||||||||| Sbjct: 1424 ggtacacagccaagagttgaagctgctatggttaatgcaagaatccggaagactgttaga 1483 Query: 150 gcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgacactcag 209 || |||||||| ||||| | || ||||| |||| | ||||||||||||||| | || Sbjct: 1484 gcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgaccatgag 1543 Query: 210 catcttggcacagggccagagacccttgttgagatagctgagggccggcatcctttctgc 269 ||||||||||| || ||| | |||||||||||||| || ||||| |||||||| ||||| Sbjct: 1544 catcttggcactggaccacaaacccttgttgagattgcagagggtcggcatcccttctgt 1603 Query: 270 tcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttatttgaacgg 329 |||| || ||||||| ||||| || || ||||| ||||| || ||||||||||| ||| Sbjct: 1604 tcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttatttgaccgg 1663 Query: 330 gaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaatgtgacg 389 |||||||||| ||| | |||||||| || || ||||||||||| |||||||||||| Sbjct: 1664 gaagaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaatgtggtt 1723 Query: 390 agaccagactggaatggcctcaatgtcctattgctccatgctgcacaggccgcagctctt 449 |||||||||||||| || || ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 1724 agaccagactggaacgggcttaatgttctattgctgcatgctgcacaagctgcagcgctt 1783 Query: 450 gatctgggcctcgtcgctaatcctacggagagcgtcaagtctgccaagttcctttacctg 509 ||||| || || || ||||||||||| |||||| ||||||| | ||||| || || ||| Sbjct: 1784 gatcttggtcttgttgctaatcctacagagagcatcaagtccacaaagtttctgtatctg 1843 Query: 510 atgggagccgacgatatcaacttggacaaccttccagcggatgcatttgttgtttaccag 569 |||||||| || ||| | |||||||||| |||| | ||||||||||||||||||||| Sbjct: 1844 atgggagctgatgatgtagacttggacaaggttccggatgatgcatttgttgtttaccag 1903 Query: 570 gggcaccatggtgacaaggctgtgtacagggccaatgttattctgccgtcttcagcattt 629 || ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 1904 ggacaccatggtgacaaggctgtgtatagggccaatgttatcctgccatcatcagcattc 1963 Query: 630 agcgagaaagagggcaccta 649 ||||||||||| |||||||| Sbjct: 1964 agcgagaaagaaggcaccta 1983
>dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D09, full insert sequence Length = 1323 Score = 476 bits (240), Expect = e-131 Identities = 525/620 (84%) Strand = Plus / Plus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 108 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 167 Query: 90 ggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagactgttaga 149 ||||| ||||| || || |||||||||||||| |||||||| || | ||||||||||||| Sbjct: 168 ggtacacagccaagagttgaagctgctatggttaatgcaagaatccggaagactgttaga 227 Query: 150 gcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgacactcag 209 || |||||||| ||||| | || ||||| |||| | ||||||||||||||| | || Sbjct: 228 gcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgaccatgag 287 Query: 210 catcttggcacagggccagagacccttgttgagatagctgagggccggcatcctttctgc 269 ||||||||||| || ||| | |||||||||||||| || ||||| |||||||| ||||| Sbjct: 288 catcttggcactggaccacaaacccttgttgagattgcagagggtcggcatcccttctgt 347 Query: 270 tcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttatttgaacgg 329 |||| || ||||||| ||||| || || ||||| ||||| || ||||||| ||| ||| Sbjct: 348 tcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttatctgaccgg 407 Query: 330 gaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaatgtgacg 389 || ||||||| ||| | |||||||| || || ||||||||||| |||||||||||| Sbjct: 408 gaggaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaatgtggtt 467 Query: 390 agaccagactggaatggcctcaatgtcctattgctccatgctgcacaggccgcagctctt 449 |||||||||||||| || || ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 468 agaccagactggaacgggcttaatgttctattgctgcatgctgcacaagctgcagcgctt 527 Query: 450 gatctgggcctcgtcgctaatcctacggagagcgtcaagtctgccaagttcctttacctg 509 ||||| || || || ||||||||||| |||||| ||||||| | ||||| || || ||| Sbjct: 528 gatcttggtcttgttgctaatcctacagagagcatcaagtccacaaagtttctgtatctg 587 Query: 510 atgggagccgacgatatcaacttggacaaccttccagcggatgcatttgttgtttaccag 569 |||||||| || ||| | |||||||||| |||| | ||||||||||||||||||||| Sbjct: 588 atgggagctgatgatgtagacttggacaaggttccggatgatgcatttgttgtttaccag 647 Query: 570 gggcaccatggtgacaaggctgtgtacagggccaatgttattctgccgtcttcagcattt 629 || ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 648 ggacaccatggtgacaaggctgtgtatagggccaatgttatcctgccatcatcagcattc 707 Query: 630 agcgagaaagagggcaccta 649 ||||||||||| |||||||| Sbjct: 708 agcgagaaagaaggcaccta 727
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 385 bits (194), Expect = e-103 Identities = 455/542 (83%) Strand = Plus / Minus Query: 108 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 167 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 28562013 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28561954 Query: 168 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 227 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 28561953 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28561894 Query: 228 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 287 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 28561893 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28561834 Query: 288 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 347 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 28561833 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28561774 Query: 348 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaatggc 407 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 28561773 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28561714 Query: 408 ctcaatgtcctattgctccatgctgcacaggccgcagctcttgatctgggcctcgtcgct 467 || ||||| |||||||| ||||||||||| || ||||| |||||||| || || || ||| Sbjct: 28561713 cttaatgttctattgctgcatgctgcacaagctgcagcgcttgatcttggtcttgttgct 28561654 Query: 468 aatcctacggagagcgtcaagtctgccaagttcctttacctgatgggagccgacgatatc 527 |||||||| |||||| ||||||| | ||||| || || ||||||||||| || ||| | Sbjct: 28561653 aatcctacagagagcatcaagtccacaaagtttctgtatctgatgggagctgatgatgta 28561594 Query: 528 aacttggacaaccttccagcggatgcatttgttgtttaccaggggcaccatggtgacaag 587 |||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 28561593 gacttggacaaggttccggatgatgcatttgttgtttaccagggacaccatggtgacaag 28561534 Query: 588 gctgtgtacagggccaatgttattctgccgtcttcagcatttagcgagaaagagggcacc 647 |||||||| |||||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct: 28561533 gctgtgtatagggccaatgttatcctgccatcatcagcattcagcgagaaagaaggcacc 28561474 Query: 648 ta 649 || Sbjct: 28561473 ta 28561472 Score = 113 bits (57), Expect = 7e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 28562634 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 28562575 Query: 90 ggtac 94 ||||| Sbjct: 28562574 ggtac 28562570
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 385 bits (194), Expect = e-103 Identities = 455/542 (83%) Strand = Plus / Minus Query: 108 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 167 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 28653337 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28653278 Query: 168 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 227 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 28653277 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28653218 Query: 228 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 287 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 28653217 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28653158 Query: 288 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 347 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 28653157 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28653098 Query: 348 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaatggc 407 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 28653097 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28653038 Query: 408 ctcaatgtcctattgctccatgctgcacaggccgcagctcttgatctgggcctcgtcgct 467 || ||||| |||||||| ||||||||||| || ||||| |||||||| || || || ||| Sbjct: 28653037 cttaatgttctattgctgcatgctgcacaagctgcagcgcttgatcttggtcttgttgct 28652978 Query: 468 aatcctacggagagcgtcaagtctgccaagttcctttacctgatgggagccgacgatatc 527 |||||||| |||||| ||||||| | ||||| || || ||||||||||| || ||| | Sbjct: 28652977 aatcctacagagagcatcaagtccacaaagtttctgtatctgatgggagctgatgatgta 28652918 Query: 528 aacttggacaaccttccagcggatgcatttgttgtttaccaggggcaccatggtgacaag 587 |||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 28652917 gacttggacaaggttccggatgatgcatttgttgtttaccagggacaccatggtgacaag 28652858 Query: 588 gctgtgtacagggccaatgttattctgccgtcttcagcatttagcgagaaagagggcacc 647 |||||||| |||||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct: 28652857 gctgtgtatagggccaatgttatcctgccatcatcagcattcagcgagaaagaaggcacc 28652798 Query: 648 ta 649 || Sbjct: 28652797 ta 28652796 Score = 113 bits (57), Expect = 7e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 28653958 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 28653899 Query: 90 ggtac 94 ||||| Sbjct: 28653898 ggtac 28653894
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 385 bits (194), Expect = e-103 Identities = 455/542 (83%) Strand = Plus / Plus Query: 108 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 167 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 136883 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 136942 Query: 168 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 227 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 136943 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 137002 Query: 228 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 287 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 137003 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 137062 Query: 288 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 347 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 137063 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 137122 Query: 348 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaatggc 407 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 137123 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 137182 Query: 408 ctcaatgtcctattgctccatgctgcacaggccgcagctcttgatctgggcctcgtcgct 467 || ||||| |||||||| ||||||||||| || ||||| |||||||| || || || ||| Sbjct: 137183 cttaatgttctattgctgcatgctgcacaagctgcagcgcttgatcttggtcttgttgct 137242 Query: 468 aatcctacggagagcgtcaagtctgccaagttcctttacctgatgggagccgacgatatc 527 |||||||| |||||| ||||||| | ||||| || || ||||||||||| || ||| | Sbjct: 137243 aatcctacagagagcatcaagtccacaaagtttctgtatctgatgggagctgatgatgta 137302 Query: 528 aacttggacaaccttccagcggatgcatttgttgtttaccaggggcaccatggtgacaag 587 |||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 137303 gacttggacaaggttccggatgatgcatttgttgtttaccagggacaccatggtgacaag 137362 Query: 588 gctgtgtacagggccaatgttattctgccgtcttcagcatttagcgagaaagagggcacc 647 |||||||| |||||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct: 137363 gctgtgtatagggccaatgttatcctgccatcatcagcattcagcgagaaagaaggcacc 137422 Query: 648 ta 649 || Sbjct: 137423 ta 137424 Score = 113 bits (57), Expect = 7e-22 Identities = 63/65 (96%) Strand = Plus / Plus Query: 30 aactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttccttttggtt 89 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 136262 aactacctaatgaatactagcattgctgggcttgagaaagctgatgtcttccttttggtt 136321 Query: 90 ggtac 94 ||||| Sbjct: 136322 ggtac 136326
>dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130E21, full insert sequence Length = 1107 Score = 345 bits (174), Expect = 1e-91 Identities = 423/506 (83%) Strand = Plus / Plus Query: 144 gttagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgac 203 |||||||| |||||||| ||||| | || ||||| |||| | ||||||||||||||| Sbjct: 1 gttagagcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgac 60 Query: 204 actcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatcct 263 | ||||||||||||| || ||| | |||||||||||||| || ||||| |||||||| Sbjct: 61 catgagcatcttggcactggaccacaaacccttgttgagattgcagagggtcggcatccc 120 Query: 264 ttctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttattt 323 ||||| |||| || ||||||| ||||| || || ||||| ||||| || ||||||||| Sbjct: 121 ttctgttcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttattt 180 Query: 324 gaacgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaat 383 || ||||||||||||| ||| | |||||||| || || ||||||||||| ||||||||| Sbjct: 181 gaccgggaagaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaat 240 Query: 384 gtgacgagaccagactggaatggcctcaatgtcctattgctccatgctgcacaggccgca 443 ||| |||||||||||||| || || ||||| |||||||| ||||||||||| || ||| Sbjct: 241 gtggttagaccagactggaacgggcttaatgttctattgctgcatgctgcacaagctgca 300 Query: 444 gctcttgatctgggcctcgtcgctaatcctacggagagcgtcaagtctgccaagttcctt 503 || |||||||| || || || ||||||||||| |||||| ||||||| | ||||| || Sbjct: 301 gcgcttgatcttggtcttgttgctaatcctacagagagcatcaagtccacaaagtttctg 360 Query: 504 tacctgatgggagccgacgatatcaacttggacaaccttccagcggatgcatttgttgtt 563 || ||||||||||| || ||| | |||||||||| |||| | ||||||||||||||| Sbjct: 361 tatctgatgggagctgatgatgtagacttggacaaggttccggatgatgcatttgttgtt 420 Query: 564 taccaggggcaccatggtgacaaggctgtgtacagggccaatgttattctgccgtcttca 623 |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || ||| Sbjct: 421 taccagggacaccatggtgacaaggctgtgtatagggccaatgttatcctgccatcatca 480 Query: 624 gcatttagcgagaaagagggcaccta 649 ||||| ||||||||||| |||||||| Sbjct: 481 gcattcagcgagaaagaaggcaccta 506
>emb|CT009535.6| M.truncatula DNA sequence from clone MTH2-68D12 on chromosome 3, complete sequence Length = 82241 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttgg 91 |||||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 37494 atgaatactagcattgctggtcttgagaaagcagatgctttcctgttggttgg 37442 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 gggtggaagctgctatggtgaatgc 127 ||||||||||||||||||| ||||| Sbjct: 37118 gggtggaagctgctatggttaatgc 37094 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 548 ggatgcatttgttgtttaccaggggcaccatggtga 583 |||||| ||||||||||| || || ||||||||||| Sbjct: 36673 ggatgcttttgttgtttatcaaggtcaccatggtga 36638
>ref|NM_123110.2| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase AT5G37510 (EMB1467) transcript variant AT5G37510.2 mRNA, complete cds Length = 2527 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453
>ref|NM_180772.1| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase AT5G37510 (EMB1467) transcript variant AT5G37510.1 mRNA, complete cds Length = 2623 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453
>gb|BT001090.1| Arabidopsis thaliana At4g37510/F6G17_160 mRNA, complete cds Length = 2040 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1279 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1338 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1339 cctagggtggaagctgcaatggtgaatgctaggat 1373
>gb|AY056140.1| Arabidopsis thaliana putative NADH dehydrogenase (ubiquinone) 76K chain precursor (At5g37510) mRNA, complete cds Length = 2526 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1331 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1390 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1391 cctagggtggaagctgcaatggtgaatgctaggat 1425
>gb|AY128304.1| Arabidopsis thaliana AT4g37510/F6G17_160 mRNA, complete cds Length = 2473 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1349 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1408 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1409 cctagggtggaagctgcaatggtgaatgctaggat 1443
>emb|BX831070.1|CNS09YQ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZD08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2528 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 39 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 98 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1329 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1388 Query: 99 cctagggtggaagctgctatggtgaatgcaaggat 133 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1389 cctagggtggaagctgcaatggtgaatgctaggat 1423
>emb|X85808.1|ST76CISUB S.tuberosum mRNA for 76 kDa mitochondrial complex I subunit Length = 2599 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 63 gagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctgctatggtg 122 |||||||| |||| ||||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct: 1327 gagaaagcagatgctttcctcttggttggaacccagccaagggttgaagctgctatggtg 1386 Query: 123 aatgcaaggattca 136 ||||| || ||||| Sbjct: 1387 aatgccagaattca 1400 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 528 aacttggacaaccttccagcggatgcatttgttgtttaccaggggcaccatggtga 583 ||||||||||| ||||||| ||||| ||||| |||||||| || ||||||||||| Sbjct: 1792 aacttggacaaacttccagatgatgcctttgtggtttaccaaggtcaccatggtga 1847
>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22 Length = 51436 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 96 cagcctagggtggaagctgctatggtgaatgcaaggat 133 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 31589 cagcctagggtggaagctgcaatggtgaatgctaggat 31626
>ref|XM_385374.1| Gibberella zeae PH-1 chromosome 3 NUAM_NEUCR NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial precursor (Complex I-78KD) (CI-78KD) (FG05198.1) partial mRNA; nuclear gene for mitochondrial product Length = 2283 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 548 ggatgcatttgttgtttaccaggggcaccatggtgacaagg 588 |||||| || || ||||||||||| ||||| |||||||||| Sbjct: 1692 ggatgctttcgtcgtttaccagggtcaccacggtgacaagg 1732
>gb|AC146175.1| Pan troglodytes BAC clone CH251-559G23 from Y, complete sequence Length = 228185 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 223765 accaggggcaccatggtgaca 223745
>gb|AC146245.2| Pan troglodytes BAC clone RP43-31J1 from Y, complete sequence Length = 189042 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 167159 accaggggcaccatggtgaca 167179
>gb|AC145769.1| Pan troglodytes BAC clone CH251-203H3 from Y, complete sequence Length = 165958 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 161538 accaggggcaccatggtgaca 161518
>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186773 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 gttctcaacaattgaaactgt 367 ||||||||||||||||||||| Sbjct: 53620 gttctcaacaattgaaactgt 53600
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 gttctcaacaattgaaactgt 367 ||||||||||||||||||||| Sbjct: 135107 gttctcaacaattgaaactgt 135087
>gb|BC085651.1| Danio rerio zgc:92209, mRNA (cDNA clone MGC:92209 IMAGE:7052019), complete cds Length = 2540 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 559 ttgtttaccaggggcaccatggtga 583 ||||||||||||| ||||||||||| Sbjct: 1757 ttgtttaccagggtcaccatggtga 1781
>gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22, complete sequence Length = 196686 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 agggtggaagctgctatggtg 122 ||||||||||||||||||||| Sbjct: 51234 agggtggaagctgctatggtg 51254
>dbj|BS000595.1| Pan troglodytes chromosome Y clone:PTB-109N05, complete sequences Length = 72000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 57767 accaggggcaccatggtgaca 57787
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 423187 accaggggcaccatggtgaca 423207
>ref|NM_001007765.1| Danio rerio zgc:92209 (zgc:92209), mRNA Length = 2540 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 559 ttgtttaccaggggcaccatggtga 583 ||||||||||||| ||||||||||| Sbjct: 1757 ttgtttaccagggtcaccatggtga 1781
>gb|AC007274.3|AC007274 Homo sapiens BAC clone RP11-105L10 from Y, complete sequence Length = 117309 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 accaggggcaccatggtgaca 585 ||||||||||||||||||||| Sbjct: 110513 accaggggcaccatggtgaca 110533
>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete sequence Length = 186861 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 gttctcaacaattgaaactgt 367 ||||||||||||||||||||| Sbjct: 53825 gttctcaacaattgaaactgt 53805
>emb|CR391917.19| Zebrafish DNA sequence from clone DKEY-97O8 in linkage group 1, complete sequence Length = 184212 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 acgagaccagactggaatggcctca 411 |||||||||||||||||||| |||| Sbjct: 163308 acgagaccagactggaatggtctca 163332
>emb|AL935287.15| Zebrafish DNA sequence from clone CH211-280O3, complete sequence Length = 174293 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 acgagaccagactggaatggcctca 411 |||||||||||||||||||| |||| Sbjct: 101336 acgagaccagactggaatggtctca 101312
>ref|XM_461810.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G06721g) partial mRNA Length = 2169 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 548 ggatgcatttgttgtttaccaggggcaccatggtga 583 |||||||||||| || ||||| || ||||||||||| Sbjct: 1659 ggatgcatttgtggtgtaccaaggtcaccatggtga 1694
>ref|XM_757461.1| Ustilago maydis 521 hypothetical protein (UM06407.1) partial mRNA Length = 2769 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 tgagaaagccgatgtcttcctttt 85 ||||||||||||| |||||||||| Sbjct: 2167 tgagaaagccgatttcttcctttt 2144
>emb|AL590114.14| Human DNA sequence from clone RP11-318H18 on chromosome X, complete sequence Length = 23809 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gaaactgtagccaagaaatt 379 |||||||||||||||||||| Sbjct: 20140 gaaactgtagccaagaaatt 20159
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 548 ggatgcatttgttgtttaccaggggcaccatggtga 583 |||||||||||| || ||||| || ||||||||||| Sbjct: 531789 ggatgcatttgtggtgtaccaaggtcaccatggtga 531824
>gb|AC104439.2| Homo sapiens chromosome 3 clone RP11-793E15, complete sequence Length = 197279 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 ttggtcctctggcagacttcaact 198 |||||||||||||||||| ||||| Sbjct: 140791 ttggtcctctggcagactccaact 140768
>gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, complete sequence Length = 186218 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 attcagaagactgttagagcaaca 155 ||||||||| |||||||||||||| Sbjct: 145508 attcagaagcctgttagagcaaca 145485
>gb|AC069394.6| Homo sapiens BAC clone RP11-731F1 from 2, complete sequence Length = 175352 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accaaggtgctgtgttctca 353 |||||||||||||||||||| Sbjct: 72476 accaaggtgctgtgttctca 72457
>gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, complete sequence Length = 177334 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 ttggtcctctggcagacttcaact 198 |||||||||||||||||| ||||| Sbjct: 38987 ttggtcctctggcagactccaact 38964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,387,520 Number of Sequences: 3902068 Number of extensions: 5387520 Number of successful extensions: 92536 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92368 Number of HSP's gapped (non-prelim): 162 length of query: 651 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 628 effective length of database: 17,143,297,704 effective search space: 10765990958112 effective search space used: 10765990958112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
