| Clone Name | bags24p22 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | US18_HCMVT (P69335) Transmembrane protein HWLF5 | 32 | 1.9 | 2 | US18_HCMVA (P69334) Transmembrane protein HWLF5 | 32 | 1.9 | 3 | PDC2_CANAL (O60035) Protein PDC2 | 30 | 5.4 | 4 | ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.1... | 30 | 5.4 |
|---|
>US18_HCMVT (P69335) Transmembrane protein HWLF5| Length = 274 Score = 31.6 bits (70), Expect = 1.9 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = +3 Query: 279 VELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTSQCQLSLN 458 V +H PT LH+ S++ V + LF+ L R++LL V H V C L++ Sbjct: 7 VSEHHESPTVTIVPLHR-SHALV----AEQQLFQWLKRFKLLMEVYHGLVWQLACTLTVC 61 Query: 459 *CAWLTY 479 AWL + Sbjct: 62 LLAWLAF 68
>US18_HCMVA (P69334) Transmembrane protein HWLF5| Length = 274 Score = 31.6 bits (70), Expect = 1.9 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = +3 Query: 279 VELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTSQCQLSLN 458 V +H PT LH+ S++ V + LF+ L R++LL V H V C L++ Sbjct: 7 VSEHHESPTVTIVPLHR-SHALV----AEQQLFQWLKRFKLLMEVYHGLVWQLACTLTVC 61 Query: 459 *CAWLTY 479 AWL + Sbjct: 62 LLAWLAF 68
>PDC2_CANAL (O60035) Protein PDC2| Length = 836 Score = 30.0 bits (66), Expect = 5.4 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +3 Query: 258 MRCCVSVVELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTS 437 +R C E NH P + T S KF Y + MN+ + FK+L R + +I+ S S Sbjct: 334 IRLCYLKNEANHKNPYNTTYSGIKFDY--LPMNFGIVEEFKILYRLQQYLEMINLQRSKS 391 Query: 438 Q 440 Q Sbjct: 392 Q 392
>ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein homolog) (ATR homolog) (ATM-like protein 1) (Ce-atl-1) Length = 2531 Score = 30.0 bits (66), Expect = 5.4 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -2 Query: 156 VFWLESFLDQIRKLFTIGRLAQECQYYVTILRSY 55 + WLE F++Q RK T E YY T++ Y Sbjct: 1505 ILWLEMFMEQKRKTSTEIESETEAAYYFTLMNLY 1538 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,087,926 Number of Sequences: 219361 Number of extensions: 1644742 Number of successful extensions: 3080 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3079 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)