ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags24p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1US18_HCMVT (P69335) Transmembrane protein HWLF5 32 1.9
2US18_HCMVA (P69334) Transmembrane protein HWLF5 32 1.9
3PDC2_CANAL (O60035) Protein PDC2 30 5.4
4ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.1... 30 5.4

>US18_HCMVT (P69335) Transmembrane protein HWLF5|
          Length = 274

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 279 VELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTSQCQLSLN 458
           V  +H  PT     LH+ S++ V    +   LF+ L R++LL  V H  V    C L++ 
Sbjct: 7   VSEHHESPTVTIVPLHR-SHALV----AEQQLFQWLKRFKLLMEVYHGLVWQLACTLTVC 61

Query: 459 *CAWLTY 479
             AWL +
Sbjct: 62  LLAWLAF 68



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>US18_HCMVA (P69334) Transmembrane protein HWLF5|
          Length = 274

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 279 VELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTSQCQLSLN 458
           V  +H  PT     LH+ S++ V    +   LF+ L R++LL  V H  V    C L++ 
Sbjct: 7   VSEHHESPTVTIVPLHR-SHALV----AEQQLFQWLKRFKLLMEVYHGLVWQLACTLTVC 61

Query: 459 *CAWLTY 479
             AWL +
Sbjct: 62  LLAWLAF 68



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +3

Query: 258 MRCCVSVVELNHLRPTSDTTSLHKFSYSFVKMNWSLHPLFKLLSRWRLLFVVIHATVSTS 437
           +R C    E NH  P + T S  KF Y  + MN+ +   FK+L R +    +I+   S S
Sbjct: 334 IRLCYLKNEANHKNPYNTTYSGIKFDY--LPMNFGIVEEFKILYRLQQYLEMINLQRSKS 391

Query: 438 Q 440
           Q
Sbjct: 392 Q 392



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>ATR_CAEEL (Q22258) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia|
            telangiectasia and Rad3-related protein homolog) (ATR
            homolog) (ATM-like protein 1) (Ce-atl-1)
          Length = 2531

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 156  VFWLESFLDQIRKLFTIGRLAQECQYYVTILRSY 55
            + WLE F++Q RK  T      E  YY T++  Y
Sbjct: 1505 ILWLEMFMEQKRKTSTEIESETEAAYYFTLMNLY 1538


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,087,926
Number of Sequences: 219361
Number of extensions: 1644742
Number of successful extensions: 3080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3079
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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