ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25d12 |
|---|---|
| Clone Library Name | barley_pub |
>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (Maternal-embryonic 3) Length = 796 Score = 153 bits (386), Expect = 4e-37 Identities = 91/193 (47%), Positives = 118/193 (61%), Gaps = 3/193 (1%) Frame = +1 Query: 1 DFKXEQNSVARLIHMLHNDDHDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRR 180 DF EQ+ V R IH+L +DD D+ IL T +KH GG +R+ FT+P LVF+A +L R Sbjct: 483 DFADEQSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542 Query: 181 LQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE--- 351 + + ++ +KIF HQTI AL EL LRL+LQ A AA + E Sbjct: 543 YK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE 600 Query: 352 PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKL 531 VAYEF +QAF LYE+EI+DSKAQ+ A+ LIIGT +RM F EN + L + ++KL Sbjct: 601 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 660 Query: 532 LKKPDQCRAVYAC 570 LKKPDQ RAV C Sbjct: 661 LKKPDQGRAVSTC 673
>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (hVPS35) (Maternal-embryonic 3) Length = 796 Score = 152 bits (383), Expect = 8e-37 Identities = 90/193 (46%), Positives = 118/193 (61%), Gaps = 3/193 (1%) Frame = +1 Query: 1 DFKXEQNSVARLIHMLHNDDHDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRR 180 DF EQ+ V R IH+L ++D D+ IL T +KH GG +R+ FT+P LVF+A +L R Sbjct: 483 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542 Query: 181 LQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE--- 351 + + ++ +KIF HQTI AL EL LRL+LQ A AA + E Sbjct: 543 YK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE 600 Query: 352 PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKL 531 VAYEF +QAF LYE+EI+DSKAQ+ A+ LIIGT +RM F EN + L + ++KL Sbjct: 601 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 660 Query: 532 LKKPDQCRAVYAC 570 LKKPDQ RAV C Sbjct: 661 LKKPDQGRAVSTC 673
>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35| Length = 785 Score = 103 bits (256), Expect = 4e-22 Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Frame = +1 Query: 1 DFKXEQNSVARLIHMLHNDDHDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRR 180 D + +VA ++H L+NDD ++IL +++ ++ G + + + +P +V + L R Sbjct: 460 DSLDDLQNVALMVHYLNNDDPQIQIEILRSLKDTFIKAG-ENVKYLLPVVVNRCIFLARN 518 Query: 181 LQGQDGDVTGEEVPATPKKI---FQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE 351 + E+V + + +L++ ++L EL L LYL AE A+ + Sbjct: 519 FRIFKCMDWAEKVRLLWEFVNTCINVLYKNGDSL------ELCLALYLSAAEMADQENYP 572 Query: 352 PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKL 531 AYEFFTQAF +YEE + DS+ Q L +IIG LQ+ F V++ DTL K T Y++KL Sbjct: 573 DFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKL 632 Query: 532 LKKPDQCRAVY 564 LKKPDQC +Y Sbjct: 633 LKKPDQCCGIY 643
>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35| Length = 944 Score = 91.3 bits (225), Expect = 2e-18 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 26/211 (12%) Frame = +1 Query: 16 QNSVARLIHMLHNDDH-------------DEMLKILCTVQKHILQGGPKRLPFTVPSLVF 156 Q +A LIH + N + L+IL ++ ++GG + +T P+++ Sbjct: 531 QEKLAHLIHWIMNTTSRKQTMKNKIQFSLEAQLEILLLIKSSFIKGGIN-VKYTFPAIIT 589 Query: 157 SALKLVRRLQ---------GQDGDVTGEEVPATPKKIFQILHQTIEAL--QCI-PCPELS 300 + KL+R+ + D K++F+ + + I + C C +L Sbjct: 590 NFWKLMRKCRMIQEYLLKKRPDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLI 649 Query: 301 LRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQR-MNIFG 477 L+L LQCA A+ L ++Y+FF+QAF ++EE ++DSK Q+ AL I +LQ+ +++ Sbjct: 650 LKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYK 709 Query: 478 VENRDTLTHKTTGYSAKLLKKPDQCRAVYAC 570 D+L + T + +KLLKK DQCRAVY C Sbjct: 710 EAYYDSLIVRCTLHGSKLLKKQDQCRAVYLC 740
>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4| Length = 933 Score = 32.0 bits (71), Expect = 1.3 Identities = 33/132 (25%), Positives = 59/132 (44%) Frame = +1 Query: 166 KLVRRLQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCD 345 K+V L+ +D + E + +F+ + L+ +P P ++ Y AAN C Sbjct: 793 KIVALLRNEDTVLDPSEDISAVTSVFK------QYLRNLPNPIITYDQYFPFITAAN-C- 844 Query: 346 LEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSA 525 +++ FI+ + + + A+I L LII L R+ + NR T + +S Sbjct: 845 ---ASFQDKLDGFIMVIKSLPPAHAEI--LQLIIRHLARVAAYSHANRMTSKNLAVVFSP 899 Query: 526 KLLKKPDQCRAV 561 L++ PD R V Sbjct: 900 TLIRDPDNSRDV 911
>MSH6_DROME (Q9VUM0) Probable DNA mismatch repair protein MSH6| Length = 1190 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +1 Query: 292 ELSLRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITAL----HLIIG--T 453 +L+L+ QC + C LEP + +++AD+K + + H+++ T Sbjct: 526 KLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATT 585 Query: 454 LQRMNIFGVENR--DTLTHKTTGYSAKLL 534 L + I G E+ TL H T + +LL Sbjct: 586 LSNLRIIGEEHSLLSTLDHCCTKFGKRLL 614
>PPSB_MYCTU (Q10978) Phenolpthiocerol synthesis polyketide synthase ppsB| Length = 1538 Score = 31.2 bits (69), Expect = 2.2 Identities = 26/77 (33%), Positives = 36/77 (46%) Frame = +1 Query: 322 AEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLT 501 A+ A +E A+ TQA I E A + A +L IGTLQR + DT+T Sbjct: 818 ADGAYHTFIEISAHPLLTQA-IADTLEDAHRPTKSAAKYLSIGTLQR------DADDTVT 870 Query: 502 HKTTGYSAKLLKKPDQC 552 +T Y+A + P C Sbjct: 871 FRTNLYTADIAHPPHTC 887
>CARA_GRATL (Q6B940) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 395 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +3 Query: 423 NYCTSPNNW--NPSADEYIWGGK*RHPHS*DNRVLSKTSKEA*SMPGSL 563 N C SPNNW S YI+ + H D R L+K ++ SM G + Sbjct: 87 NICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNGCI 135
>KUP_STRP8 (Q8P0C8) Probable potassium transport system protein kup| Length = 666 Score = 30.0 bits (66), Expect = 4.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 179 DYKVKMEMSLGRKFPQLLRRYFRSCIRLLKHS 274 DY V++E+ LG + PQ + RY R+ + L S Sbjct: 539 DYMVRVELYLGFRMPQAVPRYLRTIVHDLMES 570
>FKBP3_DEBHA (Q6BSE7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 437 Score = 29.6 bits (65), Expect = 6.3 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +2 Query: 116 VPSVYLSLCRP*YSPLSSWSDDYKVKMEMSLGRKFPQLLR-RYFRSCIRLLKHSNVFLVQ 292 +P +L ++P+ + D+Y V + ++L P+ + + S +RLLK SN+F+ Sbjct: 5 IPISTYNLALQPFNPVQAIDDEYPVTIRLTLAAVDPEAVDDKAEPSTLRLLKRSNLFVDD 64 Query: 293 NCLSD 307 L D Sbjct: 65 EDLDD 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,913,835 Number of Sequences: 219361 Number of extensions: 1424029 Number of successful extensions: 3532 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3525 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
