ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475225.1| Oryza sativa (japonica cultivar-group), predic... 466 e-128
2dbj|AK071584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
3dbj|AK068553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
4gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
5gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
7dbj|AP004920.1| Lotus japonicus genomic DNA, chromosome 2, clone... 84 4e-13
8emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i... 68 2e-08
9ref|NM_202077.1| Arabidopsis thaliana unknown protein AT1G10740 ... 48 0.023
10ref|NM_100950.3| Arabidopsis thaliana unknown protein AT1G10740 ... 48 0.023
11gb|AY120749.1| Arabidopsis thaliana putative lipase (At1g10740) ... 48 0.023
12gb|AF361099.1| Arabidopsis thaliana clone C00190 (a) putative li... 48 0.023
13gb|BT006614.1| Arabidopsis thaliana At1g10740 mRNA, complete cds 48 0.023
14emb|BX814414.1|CNS0AE1W Arabidopsis thaliana Full-length cDNA Co... 48 0.023
15emb|BX815538.1|CNS0ACYG Arabidopsis thaliana Full-length cDNA Co... 48 0.023
16gb|AC007354.3|T16B5 Arabidopsis thaliana chromosome 1 BAC T16B5 ... 48 0.023
17gb|AC009398.6|AC009398 Genomic sequence for Arabidopsis thaliana... 48 0.023
18gb|AC114820.4| Mus musculus BAC clone RP23-70M6 from 18, complet... 44 0.36
19gb|AC157564.11| Mus musculus chromosome 8, clone RP23-363J16, co... 42 1.4
20emb|AL138689.22| Human DNA sequence from clone RP11-272L14 on ch... 42 1.4
21emb|AL034424.9|HS257E24 Human DNA sequence from clone RP1-257E24... 42 1.4
22gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complet... 42 1.4
23gb|AC158564.7| Mus musculus chromosome 8, clone RP24-373M3, comp... 42 1.4
24gb|AC150569.2| Bos taurus BAC CH240-223K16 (Children's Hospital... 40 5.6
25gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete... 40 5.6
26gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete... 40 5.6
27gb|AF265215.1| Homo sapiens zinc finger protein 313 short isofor... 40 5.6
28gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 5.6
29gb|AC124435.5| Mus musculus BAC clone RP24-252A5 from chromosome... 40 5.6
30emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.6
31gb|AC140034.14| Medicago truncatula clone mth2-17g19, complete s... 40 5.6
32emb|AL138823.14| Human DNA sequence from clone RP11-64J21 on chr... 40 5.6
33dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.6
34gb|AE011759.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.6
35gb|AC068408.9| Homo sapiens chromosome 18, clone RP11-612A1, com... 40 5.6
36gb|AC021382.6|AC021382 Homo sapiens, clone RP11-26N15, complete ... 40 5.6
37ref|XM_391911.2| PREDICTED: Apis mellifera similar to GA10180-PA... 40 5.6
38ref|XM_623785.1| PREDICTED: Apis mellifera similar to GA10180-PA... 40 5.6
39gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, compl... 40 5.6
40gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 ... 40 5.6
41gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, c... 40 5.6
42gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.6 
>ref|XM_475225.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1416

 Score =  466 bits (235), Expect = e-128
 Identities = 328/359 (91%)
 Strand = Plus / Plus

                                                                       
Query: 31  tatgacactgggcattatccggtgtgggacgagcagaacccggtgcacttcgtggggcac 90
           |||||||| || ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 469 tatgacacaggacattacccggtctgggacgagcaaaacccggtgcactttgtcgggcac 528

                                                                       
Query: 91  tcggcgggcgcgcaggttgtgagggtgctgcatcagatgctcgctgagaaggctttccct 150
           ||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 529 tcggccggcgtgcaggttgtgagggtgctgcatcagatgcttgccgataaggctttccct 588

                                                                       
Query: 151 gggcatgatacttctgaagactgggttctgagccttacttccttgtcaggcgcgcttaat 210
           || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 589 ggacatgatacttctgaagactgggttcttagccttacttccttgtcgggtgcgcttaat 648

                                                                       
Query: 211 ggaaccacacggacttactacgacggcatgctggctgaagatgggagatccatgaaatca 270
           ||||||||  | |||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 649 ggaaccactagaacttactatgatggcatgctggctgaagacggaagatccatgaaatca 708

                                                                       
Query: 271 atttgtcttcttcagctctgccggcttggagtcattgtctatgattggctggacattcct 330
           || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||
Sbjct: 709 atctgtcttcttcagctctgccggattggagttatcgtctatgattggctagacattcct 768

                                                                      
Query: 331 tggctgaagaattactacaatttcggttttgatcactttgaaatgtcatggaggaaagt 389
           ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 769 tggctgaagaattactacaattttggttttgaccactttgagatgtcatggaggaaagt 827
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>dbj|AK071584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P03, full
            insert sequence
          Length = 1797

 Score =  466 bits (235), Expect = e-128
 Identities = 328/359 (91%)
 Strand = Plus / Plus

                                                                        
Query: 31   tatgacactgggcattatccggtgtgggacgagcagaacccggtgcacttcgtggggcac 90
            |||||||| || ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 684  tatgacacaggacattacccggtctgggacgagcaaaacccggtgcactttgtcgggcac 743

                                                                        
Query: 91   tcggcgggcgcgcaggttgtgagggtgctgcatcagatgctcgctgagaaggctttccct 150
            ||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 744  tcggccggcgtgcaggttgtgagggtgctgcatcagatgcttgccgataaggctttccct 803

                                                                        
Query: 151  gggcatgatacttctgaagactgggttctgagccttacttccttgtcaggcgcgcttaat 210
            || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 804  ggacatgatacttctgaagactgggttcttagccttacttccttgtcgggtgcgcttaat 863

                                                                        
Query: 211  ggaaccacacggacttactacgacggcatgctggctgaagatgggagatccatgaaatca 270
            ||||||||  | |||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 864  ggaaccactagaacttactatgatggcatgctggctgaagacggaagatccatgaaatca 923

                                                                        
Query: 271  atttgtcttcttcagctctgccggcttggagtcattgtctatgattggctggacattcct 330
            || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||
Sbjct: 924  atctgtcttcttcagctctgccggattggagttatcgtctatgattggctagacattcct 983

                                                                       
Query: 331  tggctgaagaattactacaatttcggttttgatcactttgaaatgtcatggaggaaagt 389
            ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 984  tggctgaagaattactacaattttggttttgaccactttgagatgtcatggaggaaagt 1042
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>dbj|AK068553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155K07, full
            insert sequence
          Length = 1998

 Score =  466 bits (235), Expect = e-128
 Identities = 328/359 (91%)
 Strand = Plus / Plus

                                                                        
Query: 31   tatgacactgggcattatccggtgtgggacgagcagaacccggtgcacttcgtggggcac 90
            |||||||| || ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 885  tatgacacaggacattacccggtctgggacgagcaaaacccggtgcactttgtcgggcac 944

                                                                        
Query: 91   tcggcgggcgcgcaggttgtgagggtgctgcatcagatgctcgctgagaaggctttccct 150
            ||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 945  tcggccggcgtgcaggttgtgagggtgctgcatcagatgcttgccgataaggctttccct 1004

                                                                        
Query: 151  gggcatgatacttctgaagactgggttctgagccttacttccttgtcaggcgcgcttaat 210
            || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 1005 ggacatgatacttctgaagactgggttcttagccttacttccttgtcgggtgcgcttaat 1064

                                                                        
Query: 211  ggaaccacacggacttactacgacggcatgctggctgaagatgggagatccatgaaatca 270
            ||||||||  | |||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 1065 ggaaccactagaacttactatgatggcatgctggctgaagacggaagatccatgaaatca 1124

                                                                        
Query: 271  atttgtcttcttcagctctgccggcttggagtcattgtctatgattggctggacattcct 330
            || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||
Sbjct: 1125 atctgtcttcttcagctctgccggattggagttatcgtctatgattggctagacattcct 1184

                                                                       
Query: 331  tggctgaagaattactacaatttcggttttgatcactttgaaatgtcatggaggaaagt 389
            ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 1185 tggctgaagaattactacaattttggttttgaccactttgagatgtcatggaggaaagt 1243
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>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10,
              complete sequence
          Length = 150825

 Score =  212 bits (107), Expect = 7e-52
 Identities = 137/147 (93%)
 Strand = Plus / Minus

                                                                          
Query: 243    ggctgaagatgggagatccatgaaatcaatttgtcttcttcagctctgccggcttggagt 302
              ||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 119778 ggctgaagacggaagatccatgaaatcaatctgtcttcttcagctctgccggattggagt 119719

                                                                          
Query: 303    cattgtctatgattggctggacattccttggctgaagaattactacaatttcggttttga 362
               || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 119718 tatcgtctatgattggctagacattccttggctgaagaattactacaattttggttttga 119659

                                         
Query: 363    tcactttgaaatgtcatggaggaaagt 389
               |||||||| |||||||||||||||||
Sbjct: 119658 ccactttgagatgtcatggaggaaagt 119632



 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                          
Query: 140    aggctttccctgggcatgatacttctgaagactgggttctgagccttacttccttgtcag 199
              ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 119976 aggctttccctggacatgatacttctgaagactgggttcttagccttacttccttgtcgg 119917

                                                          
Query: 200    gcgcgcttaatggaaccacacggacttactacgacggcatgctg 243
              | |||||||||||||||||  | |||||||| || |||||||||
Sbjct: 119916 gtgcgcttaatggaaccactagaacttactatgatggcatgctg 119873



 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                          
Query: 43     cattatccggtgtgggacgagcagaacccggtgcacttcgtggggcactcggcgggcgcg 102
              ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||| |
Sbjct: 120507 cattacccggtctgggacgagcaaaacccggtgcactttgtcgggcactcggccggcgtg 120448

                                           
Query: 103    caggttgtgagggtgctgcatcagatgct 131
              |||||||||||||||||||||||||||||
Sbjct: 120447 caggttgtgagggtgctgcatcagatgct 120419
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>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0014K18, complete sequence
          Length = 123508

 Score =  212 bits (107), Expect = 7e-52
 Identities = 137/147 (93%)
 Strand = Plus / Minus

                                                                         
Query: 243   ggctgaagatgggagatccatgaaatcaatttgtcttcttcagctctgccggcttggagt 302
             ||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 44328 ggctgaagacggaagatccatgaaatcaatctgtcttcttcagctctgccggattggagt 44269

                                                                         
Query: 303   cattgtctatgattggctggacattccttggctgaagaattactacaatttcggttttga 362
              || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 44268 tatcgtctatgattggctagacattccttggctgaagaattactacaattttggttttga 44209

                                        
Query: 363   tcactttgaaatgtcatggaggaaagt 389
              |||||||| |||||||||||||||||
Sbjct: 44208 ccactttgagatgtcatggaggaaagt 44182



 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                         
Query: 140   aggctttccctgggcatgatacttctgaagactgggttctgagccttacttccttgtcag 199
             ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 44526 aggctttccctggacatgatacttctgaagactgggttcttagccttacttccttgtcgg 44467

                                                         
Query: 200   gcgcgcttaatggaaccacacggacttactacgacggcatgctg 243
             | |||||||||||||||||  | |||||||| || |||||||||
Sbjct: 44466 gtgcgcttaatggaaccactagaacttactatgatggcatgctg 44423



 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                         
Query: 43    cattatccggtgtgggacgagcagaacccggtgcacttcgtggggcactcggcgggcgcg 102
             ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||| |
Sbjct: 45057 cattacccggtctgggacgagcaaaacccggtgcactttgtcgggcactcggccggcgtg 44998

                                          
Query: 103   caggttgtgagggtgctgcatcagatgct 131
             |||||||||||||||||||||||||||||
Sbjct: 44997 caggttgtgagggtgctgcatcagatgct 44969
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  212 bits (107), Expect = 7e-52
 Identities = 137/147 (93%)
 Strand = Plus / Minus

                                                                            
Query: 243      ggctgaagatgggagatccatgaaatcaatttgtcttcttcagctctgccggcttggagt 302
                ||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 19791704 ggctgaagacggaagatccatgaaatcaatctgtcttcttcagctctgccggattggagt 19791645

                                                                            
Query: 303      cattgtctatgattggctggacattccttggctgaagaattactacaatttcggttttga 362
                 || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19791644 tatcgtctatgattggctagacattccttggctgaagaattactacaattttggttttga 19791585

                                           
Query: 363      tcactttgaaatgtcatggaggaaagt 389
                 |||||||| |||||||||||||||||
Sbjct: 19791584 ccactttgagatgtcatggaggaaagt 19791558



 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                            
Query: 140      aggctttccctgggcatgatacttctgaagactgggttctgagccttacttccttgtcag 199
                ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 19791902 aggctttccctggacatgatacttctgaagactgggttcttagccttacttccttgtcgg 19791843

                                                            
Query: 200      gcgcgcttaatggaaccacacggacttactacgacggcatgctg 243
                | |||||||||||||||||  | |||||||| || |||||||||
Sbjct: 19791842 gtgcgcttaatggaaccactagaacttactatgatggcatgctg 19791799



 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                            
Query: 43       cattatccggtgtgggacgagcagaacccggtgcacttcgtggggcactcggcgggcgcg 102
                ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||| |
Sbjct: 19792433 cattacccggtctgggacgagcaaaacccggtgcactttgtcgggcactcggccggcgtg 19792374

                                             
Query: 103      caggttgtgagggtgctgcatcagatgct 131
                |||||||||||||||||||||||||||||
Sbjct: 19792373 caggttgtgagggtgctgcatcagatgct 19792345
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>dbj|AP004920.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076c,
            complete sequence
          Length = 67145

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 310  tatgattggctggacattccttggctgaagaattactacaatttcggttttgatcacttt 369
            ||||||||| | |||||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct: 9797 tatgattggttcgacattccctggctgaagaactactacaattttgggtttgatcacttt 9738

                          
Query: 370  gaaatgtcatggag 383
             | |||||||||||
Sbjct: 9737 aacatgtcatggag 9724
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>emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i2, COMPLETE
           SEQUENCE
          Length = 128654

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 310 tatgattggctggacattccttggctgaagaattactacaatttcggttttgatcacttt 369
           ||||||||| | |||||| | |||||||| || |||||||||||||| ||||||||||| 
Sbjct: 690 tatgattggttagacatttcctggctgaaaaactactacaatttcgggtttgatcacttc 631

                         
Query: 370 gaaatgtcatggag 383
            | |||||||||||
Sbjct: 630 aacatgtcatggag 617
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>ref|NM_202077.1| Arabidopsis thaliana unknown protein AT1G10740 transcript variant
            AT1G10740.2 mRNA, complete cds
          Length = 1937

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 313  gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
            |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 1012 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 1067
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>ref|NM_100950.3| Arabidopsis thaliana unknown protein AT1G10740 transcript variant
            AT1G10740.1 mRNA, complete cds
          Length = 1889

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 313  gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
            |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 1012 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 1067
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>gb|AY120749.1| Arabidopsis thaliana putative lipase (At1g10740) mRNA, complete cds
          Length = 1813

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 313  gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
            |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 1011 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 1066
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>gb|AF361099.1| Arabidopsis thaliana clone C00190 (a) putative lipase (At1g10740)
           mRNA, complete cds
          Length = 1422

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 313 gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
           |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 718 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 773
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>gb|BT006614.1| Arabidopsis thaliana At1g10740 mRNA, complete cds
          Length = 1422

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 313 gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
           |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 718 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 773
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>emb|BX814414.1|CNS0AE1W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB72ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1797

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 313 gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
           |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 941 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 996
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>emb|BX815538.1|CNS0ACYG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZC04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1414

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 313 gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
           |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 479 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 534
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>gb|AC007354.3|T16B5 Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence
          Length = 70116

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 313   gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
             |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 45791 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 45846
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>gb|AC009398.6|AC009398 Genomic sequence for Arabidopsis thaliana BAC F20B24 from chromosome I,
             complete sequence
          Length = 99416

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 313   gattggctggacattccttggctgaagaattactacaatttcggttttgatcactt 368
             |||||| |||||||| | ||||| |||| ||| ||||||||||| || ||||||||
Sbjct: 69400 gattggttggacatttcatggctaaagacttattacaatttcgggttcgatcactt 69345
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>gb|AC114820.4| Mus musculus BAC clone RP23-70M6 from 18, complete sequence
          Length = 174470

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 162   ttctgaagactgggttctgagcctta 187
             |||||||||||||||| |||||||||
Sbjct: 53693 ttctgaagactgggttgtgagcctta 53718
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>gb|AC157564.11| Mus musculus chromosome 8, clone RP23-363J16, complete sequence
          Length = 216585

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 386  aagttgggttttctggtttag 406
            |||||||||||||||||||||
Sbjct: 4771 aagttgggttttctggtttag 4791
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>emb|AL138689.22| Human DNA sequence from clone RP11-272L14 on chromosome 13 Contains the
             EFNB2 gene for ephrin-B2 (HTKL EPLG5 LERK5)and a CpG
             island, complete sequence
          Length = 103616

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   acattccttggctgaagaatt 343
             |||||||||||||||||||||
Sbjct: 50353 acattccttggctgaagaatt 50333
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>emb|AL034424.9|HS257E24 Human DNA sequence from clone RP1-257E24 on chromosome 20q12-13.1
             Contains the 3' end of the SLC13A3 gene for member 3 of
             solute carrier family 13 (sodium-dependent dicarboxylate
             transporter), the C20orf123 gene for chromosome 20 open
             reading frame 123, the 5' end of a novel zinc finger
             protein gene, ESTs, STSs and GSSs, complete sequence
          Length = 127735

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   tctgagccttacttccttgtc 197
             |||||||||||||||||||||
Sbjct: 21802 tctgagccttacttccttgtc 21822
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>gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complete sequence
          Length = 75455

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   tccatgaaatcaatttgtctt 279
             |||||||||||||||||||||
Sbjct: 45361 tccatgaaatcaatttgtctt 45341
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>gb|AC158564.7| Mus musculus chromosome 8, clone RP24-373M3, complete sequence
          Length = 144461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  aagttgggttttctggtttag 406
            |||||||||||||||||||||
Sbjct: 2923 aagttgggttttctggtttag 2903
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>gb|AC150569.2| Bos taurus  BAC CH240-223K16 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 186055

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    actttgaaatgtcatggagg 384
              ||||||||||||||||||||
Sbjct: 127159 actttgaaatgtcatggagg 127140
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>gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete sequence
          Length = 172029

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   catgaaatcaatttgtcttc 280
             ||||||||||||||||||||
Sbjct: 60446 catgaaatcaatttgtcttc 60427
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>gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete sequence
          Length = 173988

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    catgaaatcaatttgtcttc 280
              ||||||||||||||||||||
Sbjct: 100558 catgaaatcaatttgtcttc 100539
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>gb|AF265215.1| Homo sapiens zinc finger protein 313 short isoform mRNA, complete
           cds
          Length = 753

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 ggacattccttggctgaaga 340
           ||||||||||||||||||||
Sbjct: 412 ggacattccttggctgaaga 393
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gtggggcactcggcgggcgc 101
              ||||||||||||||||||||
Sbjct: 914183 gtggggcactcggcgggcgc 914164
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>gb|AC124435.5| Mus musculus BAC clone RP24-252A5 from chromosome 10, complete
            sequence
          Length = 160184

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  gaaatcaatttgtcttcttc 283
            ||||||||||||||||||||
Sbjct: 7892 gaaatcaatttgtcttcttc 7911
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     cggcatgctggctgaagatg 253
               ||||||||||||||||||||
Sbjct: 1500833 cggcatgctggctgaagatg 1500852
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>gb|AC140034.14| Medicago truncatula clone mth2-17g19, complete sequence
          Length = 83825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   tccatgaaatcaatttgtct 278
             ||||||||||||||||||||
Sbjct: 13693 tccatgaaatcaatttgtct 13712
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>emb|AL138823.14| Human DNA sequence from clone RP11-64J21 on chromosome 13 Contains part
              of a novel gene similar to tumour-associated hydroquinone
              (NADH) oxidase TNOX, a ribosomal protein L36 (RPL36)
              pseudogene and a CpG island, complete sequence
          Length = 175112

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    aagttgggttttctggttta 405
              ||||||||||||||||||||
Sbjct: 128880 aagttgggttttctggttta 128861
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     cggcatgctggctgaagatg 253
               ||||||||||||||||||||
Sbjct: 1319163 cggcatgctggctgaagatg 1319182
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>gb|AE011759.1| Xanthomonas axonopodis pv. citri str. 306,  section 137 of 469 of
           the complete genome
          Length = 10210

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 cggcatgctggctgaagatg 253
           ||||||||||||||||||||
Sbjct: 816 cggcatgctggctgaagatg 835
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>gb|AC068408.9| Homo sapiens chromosome 18, clone RP11-612A1, complete sequence
          Length = 183583

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    acattccttggctgaagaat 342
              ||||||||||||||||||||
Sbjct: 124012 acattccttggctgaagaat 123993
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>gb|AC021382.6|AC021382 Homo sapiens, clone RP11-26N15, complete sequence
          Length = 189806

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    acattccttggctgaagaat 342
              ||||||||||||||||||||
Sbjct: 158597 acattccttggctgaagaat 158616
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>ref|XM_391911.2| PREDICTED: Apis mellifera similar to GA10180-PA (LOC408361), mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 tgaagaattactacaatttc 354
           ||||||||||||||||||||
Sbjct: 587 tgaagaattactacaatttc 606
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>ref|XM_623785.1| PREDICTED: Apis mellifera similar to GA10180-PA (LOC408361), mRNA
          Length = 1243

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 tgaagaattactacaatttc 354
           ||||||||||||||||||||
Sbjct: 606 tgaagaattactacaatttc 625
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>gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 356    gttttgatcactttgaaatgtcat 379
              |||||||||||||||||| |||||
Sbjct: 158214 gttttgatcactttgaaaggtcat 158191
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>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete
              sequence
          Length = 315815

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    catgaaatcaatttgtcttc 280
              ||||||||||||||||||||
Sbjct: 200538 catgaaatcaatttgtcttc 200519
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>gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, complete sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gaaatcaatttgtcttcttc 283
             ||||||||||||||||||||
Sbjct: 28608 gaaatcaatttgtcttcttc 28589
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     cggcatgctggctgaagatg 253
               ||||||||||||||||||||
Sbjct: 1342754 cggcatgctggctgaagatg 1342773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,339,260
Number of Sequences: 3902068
Number of extensions: 3339260
Number of successful extensions: 61770
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61632
Number of HSP's gapped (non-prelim): 138
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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