| Clone Name | bags25c15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full insert mRNA sequence Length = 1264 Score = 188 bits (95), Expect = 3e-45 Identities = 105/109 (96%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 69 cctttcaatcccatccttggagagacgtatgagatggttaaccatcagggtattacattt 128 Query: 82 attgctgagcaggtnagccatcatnctccgatgggtgtagctcactgtg 130 |||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 129 attgctgagcaggtaagccatcatcctccgatgggtgtagctcactgtg 177
>dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full insert sequence Length = 1898 Score = 157 bits (79), Expect = 1e-35 Identities = 101/109 (92%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| Sbjct: 738 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 797 Query: 82 attgctgagcaggtnagccatcatnctccgatgggtgtagctcactgtg 130 |||||||||||||| ||||||||| |||||||||||| |||||||||| Sbjct: 798 attgctgagcaggtaagccatcatcctccgatgggtgccgctcactgtg 846
>gb|AY103776.1| Zea mays PCO077793 mRNA sequence Length = 1843 Score = 145 bits (73), Expect = 4e-32 Identities = 98/107 (91%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 628 ccttttaatccgatccttggagagacttatgagatggttaaccaccagggcattacattt 687 Query: 82 attgctgagcaggtnagccatcatnctccgatgggtgtagctcactg 128 ||||||||||||| ||||||||| | || |||||||| |||||||| Sbjct: 688 cttgctgagcaggtaagccatcatcccccaatgggtgttgctcactg 734
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 3e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| Sbjct: 9194549 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 9194608 Query: 82 attgctgagcaggt 95 |||||||||||||| Sbjct: 9194609 attgctgagcaggt 9194622 Score = 52.0 bits (26), Expect = 4e-04 Identities = 36/40 (90%) Strand = Plus / Plus Query: 91 caggtnagccatcatnctccgatgggtgtagctcactgtg 130 ||||| ||||||||| |||||||||||| |||||||||| Sbjct: 9194733 caggtaagccatcatcctccgatgggtgccgctcactgtg 9194772
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 115 bits (58), Expect = 3e-23 Identities = 70/74 (94%) Strand = Plus / Minus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| Sbjct: 91842 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 91783 Query: 82 attgctgagcaggt 95 |||||||||||||| Sbjct: 91782 attgctgagcaggt 91769 Score = 52.0 bits (26), Expect = 4e-04 Identities = 36/40 (90%) Strand = Plus / Minus Query: 91 caggtnagccatcatnctccgatgggtgtagctcactgtg 130 ||||| ||||||||| |||||||||||| |||||||||| Sbjct: 91658 caggtaagccatcatcctccgatgggtgccgctcactgtg 91619
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 3e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| Sbjct: 9192382 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 9192441 Query: 82 attgctgagcaggt 95 |||||||||||||| Sbjct: 9192442 attgctgagcaggt 9192455 Score = 52.0 bits (26), Expect = 4e-04 Identities = 36/40 (90%) Strand = Plus / Plus Query: 91 caggtnagccatcatnctccgatgggtgtagctcactgtg 130 ||||| ||||||||| |||||||||||| |||||||||| Sbjct: 9192566 caggtaagccatcatcctccgatgggtgccgctcactgtg 9192605
>ref|NM_125333.3| Arabidopsis thaliana oxysterol binding AT5G59420 mRNA, complete cds Length = 1726 Score = 58.0 bits (29), Expect = 7e-06 Identities = 70/84 (83%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 ||||||||||| || ||||| ||||| ||||||||||| ||||| || ||| | ||| Sbjct: 581 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 640 Query: 82 attgctgagcaggtnagccatcat 105 ||| |||||||||| ||||||||| Sbjct: 641 atttctgagcaggttagccatcat 664
>gb|BT000115.1| Arabidopsis thaliana oxysterol-binding protein (At5g59350) mRNA, complete cds Length = 1453 Score = 58.0 bits (29), Expect = 7e-06 Identities = 70/84 (83%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 ||||||||||| || ||||| ||||| ||||||||||| ||||| || ||| | ||| Sbjct: 430 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 489 Query: 82 attgctgagcaggtnagccatcat 105 ||| |||||||||| ||||||||| Sbjct: 490 atttctgagcaggttagccatcat 513
>gb|AY054473.1| Arabidopsis thaliana oxysterol-binding protein (At5g59350; F2O15.10) mRNA, complete cds Length = 1691 Score = 58.0 bits (29), Expect = 7e-06 Identities = 70/84 (83%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 ||||||||||| || ||||| ||||| ||||||||||| ||||| || ||| | ||| Sbjct: 547 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 606 Query: 82 attgctgagcaggtnagccatcat 105 ||| |||||||||| ||||||||| Sbjct: 607 atttctgagcaggttagccatcat 630
>emb|BX830371.1|CNS0A03Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB76ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1678 Score = 58.0 bits (29), Expect = 7e-06 Identities = 70/84 (83%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81 ||||||||||| || ||||| ||||| ||||||||||| ||||| || ||| | ||| Sbjct: 583 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 642 Query: 82 attgctgagcaggtnagccatcat 105 ||| |||||||||| ||||||||| Sbjct: 643 atttctgagcaggttagccatcat 666
>dbj|AB025604.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15 Length = 75125 Score = 48.1 bits (24), Expect = 0.006 Identities = 39/44 (88%) Strand = Plus / Plus Query: 22 cctttcaatcccatccttggagagacgtatgagatggttaacca 65 ||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 26374 cctttcaatcctattcttggggagacatatgagatggtcaacca 26417
>gb|AY450640.1| Solanum tuberosum oxysterol-binding protein mRNA, complete cds Length = 1557 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acatttattgctgagcaggt 95 |||||||||||||||||||| Sbjct: 498 acatttattgctgagcaggt 517
>gb|AY450639.1| Solanum tuberosum clone plbr3 putative oxysterol-binding protein mRNA, partial cds Length = 656 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acatttattgctgagcaggt 95 |||||||||||||||||||| Sbjct: 256 acatttattgctgagcaggt 275
>ref|NM_120328.2| Arabidopsis thaliana HSC70-1; ATP binding AT5G02500 (HSC70-1) mRNA, complete cds Length = 2371 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1670 tcaatctcatccttggagagacg 1648
>gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosome 9, complete sequence Length = 201524 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catttattgctgagcaggt 95 ||||||||||||||||||| Sbjct: 11865 catttattgctgagcaggt 11847
>emb|X77199.1|ATHSC701 A.thaliana hsc70-1 gene Length = 4297 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1847 tcaatctcatccttggagagacg 1825
>emb|X74604.1|ATHSC70 A.thaliana hsc70 mRNA for heat shock cognate protein Length = 2209 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1639 tcaatctcatccttggagagacg 1617
>gb|AY035123.1| Arabidopsis thaliana putative dnaK-type molecular chaperone hsc70.1 protein (At5g02500) mRNA, partial cds Length = 860 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 257 tcaatctcatccttggagagacg 235
>emb|AL162971.1|ATT22P11 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P11 (ESSA project) Length = 96424 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 35376 tcaatctcatccttggagagacg 35398
>gb|AY120747.1| Arabidopsis thaliana DnaK-type molecular chaperone hsc70.1 (At5g02500) mRNA, complete cds Length = 2254 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1669 tcaatctcatccttggagagacg 1647
>gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, complete sequence Length = 185755 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 agggcattacatttattgc 86 ||||||||||||||||||| Sbjct: 174311 agggcattacatttattgc 174329
>gb|AY057481.1| Arabidopsis thaliana AT5g02500/T22P11_90 mRNA, complete cds Length = 2228 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1669 tcaatctcatccttggagagacg 1647
>emb|BX832460.1|CNS0A1Q8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZA02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2188 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1650 tcaatctcatccttggagagacg 1628
>gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome 9, complete sequence Length = 171391 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catttattgctgagcaggt 95 ||||||||||||||||||| Sbjct: 158241 catttattgctgagcaggt 158223
>gb|BT002754.1| Arabidopsis thaliana clone C104920 putative dnaK-type molecular chaperone hsc70.1 protein (At5g02500) mRNA, complete cds Length = 1987 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tcaatcccatccttggagagacg 48 |||||| |||||||||||||||| Sbjct: 1565 tcaatctcatccttggagagacg 1543
>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196753 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ccaccagggcattacattt 81 ||||||||||||||||||| Sbjct: 73952 ccaccagggcattacattt 73934
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 catttattgctgagcaggt 95 ||||||||||||||||||| Sbjct: 2829507 catttattgctgagcaggt 2829525
>dbj|AP006637.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208b, complete sequence Length = 33484 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 gggcattacatttattgct 87 ||||||||||||||||||| Sbjct: 26364 gggcattacatttattgct 26382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 707,028 Number of Sequences: 3902068 Number of extensions: 707028 Number of successful extensions: 61347 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61280 Number of HSP's gapped (non-prelim): 67 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)