ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full ... 188 3e-45
2dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 1e-35
3gb|AY103776.1| Zea mays PCO077793 mRNA sequence 145 4e-32
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 3e-23
5gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str... 115 3e-23
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 3e-23
7ref|NM_125333.3| Arabidopsis thaliana oxysterol binding AT5G5942... 58 7e-06
8gb|BT000115.1| Arabidopsis thaliana oxysterol-binding protein (A... 58 7e-06
9gb|AY054473.1| Arabidopsis thaliana oxysterol-binding protein (A... 58 7e-06
10emb|BX830371.1|CNS0A03Y Arabidopsis thaliana Full-length cDNA Co... 58 7e-06
11dbj|AB025604.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 48 0.006
12gb|AY450640.1| Solanum tuberosum oxysterol-binding protein mRNA,... 40 1.5
13gb|AY450639.1| Solanum tuberosum clone plbr3 putative oxysterol-... 40 1.5
14ref|NM_120328.2| Arabidopsis thaliana HSC70-1; ATP binding AT5G0... 38 6.1
15gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosom... 38 6.1
16emb|X77199.1|ATHSC701 A.thaliana hsc70-1 gene 38 6.1
17emb|X74604.1|ATHSC70 A.thaliana hsc70 mRNA for heat shock cognat... 38 6.1
18gb|AY035123.1| Arabidopsis thaliana putative dnaK-type molecular... 38 6.1
19emb|AL162971.1|ATT22P11 Arabidopsis thaliana DNA chromosome 5, B... 38 6.1
20gb|AY120747.1| Arabidopsis thaliana DnaK-type molecular chaperon... 38 6.1
21gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, comple... 38 6.1
22gb|AY057481.1| Arabidopsis thaliana AT5g02500/T22P11_90 mRNA, co... 38 6.1
23emb|BX832460.1|CNS0A1Q8 Arabidopsis thaliana Full-length cDNA Co... 38 6.1
24gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome... 38 6.1
25gb|BT002754.1| Arabidopsis thaliana clone C104920 putative dnaK-... 38 6.1
26gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Can... 38 6.1
27emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 38 6.1
28dbj|AP006637.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 6.1

>gb|BT009302.1| Triticum aestivum clone wlm1.pk0014.e3:fis, full insert mRNA
           sequence
          Length = 1264

 Score =  188 bits (95), Expect = 3e-45
 Identities = 105/109 (96%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 69  cctttcaatcccatccttggagagacgtatgagatggttaaccatcagggtattacattt 128

                                                            
Query: 82  attgctgagcaggtnagccatcatnctccgatgggtgtagctcactgtg 130
           |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 129 attgctgagcaggtaagccatcatcctccgatgggtgtagctcactgtg 177



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>dbj|AK060769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full
           insert sequence
          Length = 1898

 Score =  157 bits (79), Expect = 1e-35
 Identities = 101/109 (92%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 738 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 797

                                                            
Query: 82  attgctgagcaggtnagccatcatnctccgatgggtgtagctcactgtg 130
           |||||||||||||| ||||||||| ||||||||||||  ||||||||||
Sbjct: 798 attgctgagcaggtaagccatcatcctccgatgggtgccgctcactgtg 846



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>gb|AY103776.1| Zea mays PCO077793 mRNA sequence
          Length = 1843

 Score =  145 bits (73), Expect = 4e-32
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 628 ccttttaatccgatccttggagagacttatgagatggttaaccaccagggcattacattt 687

                                                          
Query: 82  attgctgagcaggtnagccatcatnctccgatgggtgtagctcactg 128
            ||||||||||||| ||||||||| | || |||||||| ||||||||
Sbjct: 688 cttgctgagcaggtaagccatcatcccccaatgggtgttgctcactg 734



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 3e-23
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                           
Query: 22      cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
               |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 9194549 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 9194608

                             
Query: 82      attgctgagcaggt 95
               ||||||||||||||
Sbjct: 9194609 attgctgagcaggt 9194622



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 91      caggtnagccatcatnctccgatgggtgtagctcactgtg 130
               ||||| ||||||||| ||||||||||||  ||||||||||
Sbjct: 9194733 caggtaagccatcatcctccgatgggtgccgctcactgtg 9194772



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>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score =  115 bits (58), Expect = 3e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                         
Query: 22    cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
             |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 91842 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 91783

                           
Query: 82    attgctgagcaggt 95
             ||||||||||||||
Sbjct: 91782 attgctgagcaggt 91769



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 91    caggtnagccatcatnctccgatgggtgtagctcactgtg 130
             ||||| ||||||||| ||||||||||||  ||||||||||
Sbjct: 91658 caggtaagccatcatcctccgatgggtgccgctcactgtg 91619



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 3e-23
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                           
Query: 22      cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
               |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 9192382 cctttcaatcccatccttggggagacatatgagatggttaaccaccagggtatttcattt 9192441

                             
Query: 82      attgctgagcaggt 95
               ||||||||||||||
Sbjct: 9192442 attgctgagcaggt 9192455



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 91      caggtnagccatcatnctccgatgggtgtagctcactgtg 130
               ||||| ||||||||| ||||||||||||  ||||||||||
Sbjct: 9192566 caggtaagccatcatcctccgatgggtgccgctcactgtg 9192605



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>ref|NM_125333.3| Arabidopsis thaliana oxysterol binding AT5G59420 mRNA, complete cds
          Length = 1726

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           ||||||||||| || ||||| ||||| ||||||||||| |||||    || ||| | |||
Sbjct: 581 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 640

                                   
Query: 82  attgctgagcaggtnagccatcat 105
           ||| |||||||||| |||||||||
Sbjct: 641 atttctgagcaggttagccatcat 664



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>gb|BT000115.1| Arabidopsis thaliana oxysterol-binding protein (At5g59350) mRNA,
           complete cds
          Length = 1453

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           ||||||||||| || ||||| ||||| ||||||||||| |||||    || ||| | |||
Sbjct: 430 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 489

                                   
Query: 82  attgctgagcaggtnagccatcat 105
           ||| |||||||||| |||||||||
Sbjct: 490 atttctgagcaggttagccatcat 513



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>gb|AY054473.1| Arabidopsis thaliana oxysterol-binding protein (At5g59350;
           F2O15.10) mRNA, complete cds
          Length = 1691

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           ||||||||||| || ||||| ||||| ||||||||||| |||||    || ||| | |||
Sbjct: 547 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 606

                                   
Query: 82  attgctgagcaggtnagccatcat 105
           ||| |||||||||| |||||||||
Sbjct: 607 atttctgagcaggttagccatcat 630



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>emb|BX830371.1|CNS0A03Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB76ZD07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1678

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 22  cctttcaatcccatccttggagagacgtatgagatggttaaccaccagggcattacattt 81
           ||||||||||| || ||||| ||||| ||||||||||| |||||    || ||| | |||
Sbjct: 583 cctttcaatcctattcttggggagacatatgagatggtcaaccatggtgggatttctttt 642

                                   
Query: 82  attgctgagcaggtnagccatcat 105
           ||| |||||||||| |||||||||
Sbjct: 643 atttctgagcaggttagccatcat 666



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>dbj|AB025604.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15
          Length = 75125

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 22    cctttcaatcccatccttggagagacgtatgagatggttaacca 65
             ||||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 26374 cctttcaatcctattcttggggagacatatgagatggtcaacca 26417



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>gb|AY450640.1| Solanum tuberosum oxysterol-binding protein mRNA, complete cds
          Length = 1557

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 76  acatttattgctgagcaggt 95
           ||||||||||||||||||||
Sbjct: 498 acatttattgctgagcaggt 517



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>gb|AY450639.1| Solanum tuberosum clone plbr3 putative oxysterol-binding protein
           mRNA, partial cds
          Length = 656

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 76  acatttattgctgagcaggt 95
           ||||||||||||||||||||
Sbjct: 256 acatttattgctgagcaggt 275



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>ref|NM_120328.2| Arabidopsis thaliana HSC70-1; ATP binding AT5G02500 (HSC70-1) mRNA,
            complete cds
          Length = 2371

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1670 tcaatctcatccttggagagacg 1648



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>gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosome 9, complete sequence
          Length = 201524

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 77    catttattgctgagcaggt 95
             |||||||||||||||||||
Sbjct: 11865 catttattgctgagcaggt 11847



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>emb|X77199.1|ATHSC701 A.thaliana hsc70-1 gene
          Length = 4297

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1847 tcaatctcatccttggagagacg 1825



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>emb|X74604.1|ATHSC70 A.thaliana hsc70 mRNA for heat shock cognate protein
          Length = 2209

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1639 tcaatctcatccttggagagacg 1617



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>gb|AY035123.1| Arabidopsis thaliana putative dnaK-type molecular chaperone hsc70.1
           protein (At5g02500) mRNA, partial cds
          Length = 860

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 26  tcaatcccatccttggagagacg 48
           |||||| ||||||||||||||||
Sbjct: 257 tcaatctcatccttggagagacg 235



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>emb|AL162971.1|ATT22P11 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P11 (ESSA project)
          Length = 96424

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    tcaatcccatccttggagagacg 48
             |||||| ||||||||||||||||
Sbjct: 35376 tcaatctcatccttggagagacg 35398



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>gb|AY120747.1| Arabidopsis thaliana DnaK-type molecular chaperone hsc70.1
            (At5g02500) mRNA, complete cds
          Length = 2254

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1669 tcaatctcatccttggagagacg 1647



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>gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, complete sequence
          Length = 185755

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     agggcattacatttattgc 86
              |||||||||||||||||||
Sbjct: 174311 agggcattacatttattgc 174329



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>gb|AY057481.1| Arabidopsis thaliana AT5g02500/T22P11_90 mRNA, complete cds
          Length = 2228

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1669 tcaatctcatccttggagagacg 1647



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>emb|BX832460.1|CNS0A1Q8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZA02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2188

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1650 tcaatctcatccttggagagacg 1628



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>gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome 9, complete sequence
          Length = 171391

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     catttattgctgagcaggt 95
              |||||||||||||||||||
Sbjct: 158241 catttattgctgagcaggt 158223



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>gb|BT002754.1| Arabidopsis thaliana clone C104920 putative dnaK-type molecular
            chaperone hsc70.1 protein (At5g02500) mRNA, complete cds
          Length = 1987

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 26   tcaatcccatccttggagagacg 48
            |||||| ||||||||||||||||
Sbjct: 1565 tcaatctcatccttggagagacg 1543



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>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 196753

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    ccaccagggcattacattt 81
             |||||||||||||||||||
Sbjct: 73952 ccaccagggcattacattt 73934



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      catttattgctgagcaggt 95
               |||||||||||||||||||
Sbjct: 2829507 catttattgctgagcaggt 2829525



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>dbj|AP006637.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208b,
             complete sequence
          Length = 33484

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    gggcattacatttattgct 87
             |||||||||||||||||||
Sbjct: 26364 gggcattacatttattgct 26382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 707,028
Number of Sequences: 3902068
Number of extensions: 707028
Number of successful extensions: 61347
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61280
Number of HSP's gapped (non-prelim): 67
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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