ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25c14 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 96.7 bits (239), Expect = 1e-20 Identities = 50/80 (62%), Positives = 58/80 (72%) Frame = +1 Query: 4 YVN*TDALXHAFSLLRRYDHKPESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLAL 183 Y+N LLRRYD KPES R LLDEDGP+YVH+F++ILR I KEETVEYVLAL Sbjct: 21 YMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLAL 80 Query: 184 IDEMLAGXPKRAXLXYDKSL 243 I EML+ P RA L +D+SL Sbjct: 81 IYEMLSANPTRARLFHDESL 100
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 46.6 bits (109), Expect = 2e-05 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Frame = +1 Query: 46 LRRYDHKPESQ-RGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRAX 222 ++R++ K S+ + +L +G F+N++ ISKE+TV+Y+L ++D+ML +R Sbjct: 50 IQRFEMKRSSEDKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVS 109 Query: 223 LXYD 234 + +D Sbjct: 110 IFFD 113
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 43.9 bits (102), Expect = 1e-04 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Frame = +1 Query: 46 LRRYDHK--PESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRA 219 ++R++ K PE ++ +L +G F+N++ ISKE+TV+Y+L L+D+ L +R Sbjct: 50 IQRFEMKRSPEEKQ-EMLQTEGSQRAKTFINLMTHISKEQTVQYILTLVDDTLQENHQRV 108 Query: 220 XLXYD 234 + +D Sbjct: 109 SIFFD 113
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Frame = +1 Query: 46 LRRYDHK--PESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRA 219 ++R++ K PE ++ +L +G F+N++ I KE+TV+Y+L ++D+ML +R Sbjct: 50 IQRFEMKRSPEEKQ-EMLQTEGSQCAKTFINLMTHICKEQTVQYILTMVDDMLQENHQRV 108 Query: 220 XLXYD 234 + +D Sbjct: 109 SIFFD 113
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Frame = +1 Query: 46 LRRYDHK--PESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRA 219 ++R++ K PE ++ +L +G F+N++ ISKE+TV+Y+L ++D+ L +R Sbjct: 50 IQRFEMKRSPEEKQ-EMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDTLQENHQRV 108 Query: 220 XLXYD 234 + +D Sbjct: 109 SIFFD 113
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Frame = +1 Query: 76 QRGP--LLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRAXL 225 QRG L D++ + VFLN+L ISK+ T++Y+L LID++L+ R + Sbjct: 66 QRGQKDLPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKI 117
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +1 Query: 70 ESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRAXLXYD 234 + R L ++ V LN++ +SK+ T++Y+L L+D++L R L +D Sbjct: 56 DKSRASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQEDRSRVDLFHD 110
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 35.8 bits (81), Expect = 0.030 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +1 Query: 70 ESQRGPLLDEDGPSYVHVFLNILRSISKEETVEYVLALIDEMLAGXPKRAXLXYD 234 E++R +L V+ F++++ ISK++ V Y L LID+ML R + D Sbjct: 54 EAERSTVLSVFKEKAVYAFVHLMSQISKDDYVRYTLTLIDDMLREDVTRTIIFED 108
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 30.0 bits (66), Expect = 1.7 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 130 NILRSISKEETVEYVLALIDEMLAGXPKRAXLXY 231 N++ ++K++ V YVL L D+ML R L + Sbjct: 83 NLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFH 116
>ESYN_FUSEQ (Q00869) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] Length = 3131 Score = 29.6 bits (65), Expect = 2.2 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%) Frame = +1 Query: 43 LLRRYDHKPE------SQRGPLLDE----DGPSYVHVFLNILRSISKEETVEYVLALID 189 LL RY H PE +++ PLL+E DGP+ V + + S + E++V +++ ID Sbjct: 285 LLSRYTHSPEALFGIVTEQTPLLEEQLMLDGPTRTVVPIRV--SCASEQSVSDIMSTID 341
>NBEA_CAEEL (Q19317) Putative neurobeachin homolog| Length = 2507 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +1 Query: 115 VHVFLNILRSISKEETVEYVLALIDEMLAGXPKRAXLXYDKS 240 VH LN+L ++ +++ + VLAL+ +LA P DK+ Sbjct: 780 VHTLLNLLATVREDDNLYDVLALVTRLLAEHPAIMIPAIDKN 821
>COX1_LOLPE (Q8WEW4) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 223 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 120 MNIRWSILIKQRTSLTFWFVVIT 52 MN+RW L+ +R SL W V IT Sbjct: 155 MNMRWEGLLMERLSLFVWSVFIT 177
>SPG2_STRSG (P19909) Immunoglobulin G binding protein G precursor (IgG binding| protein G) Length = 593 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +1 Query: 145 ISKEETVEYVLALIDEMLAGXPK 213 I+ +TVE V ALIDE+LA PK Sbjct: 278 INNAKTVEGVKALIDEILAALPK 300
>RPIA_METJA (Q58998) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 8/56 (14%) Frame = +1 Query: 70 ESQRGPLLDEDGPSYVHVFLNILRSISKEETVEY--------VLALIDEMLAGXPK 213 + +RGP++ ++G + VF+NI +I E+ + + +D++L G K Sbjct: 164 DRKRGPVITDNGNMIIDVFMNIDDAIELEKEINNIPGVVENGIFTKVDKVLVGTKK 219
>COX1_LOLFO (Q9TGE6) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 213 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 120 MNIRWSILIKQRTSLTFWFVVIT 52 MN+RW L+ +R SL W V IT Sbjct: 149 MNMRWEGLLMERMSLFVWSVFIT 171
>Y343_METJA (Q57789) Hypothetical protein MJ0343| Length = 849 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +1 Query: 19 DALXHAFSLLRRYDHKPESQRGPLLDEDGPSYVHVFLNILRSISKE-----ETVEYVLAL 183 +A+ A ++ Y H GPL D+D +H NI+ I KE +T++Y L Sbjct: 736 NAVSQAAGIISSYLHHTTPDVGPLKDDDKWG-IHFMENIIGGIRKEIPNLKKTIDYTAKL 794 Query: 184 I 186 + Sbjct: 795 M 795 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,920,807 Number of Sequences: 219361 Number of extensions: 461411 Number of successful extensions: 1167 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1167 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
