ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25c14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ref|NM_185755.2| Oryza sativa (japonica cultivar-group), mRNA | 165 | 8e-38 | 2 | dbj|AK067714.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 165 | 8e-38 | 3 | dbj|AK104331.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 157 | 2e-35 | 4 | gb|AY108648.1| Zea mays PCO090155 mRNA sequence | 103 | 3e-19 | 5 | dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... | 94 | 2e-16 | 6 | dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... | 94 | 2e-16 | 7 | emb|AL390058.13| Human DNA sequence from clone RP11-345E19 on ch... | 42 | 0.81 |
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>ref|NM_185755.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 165 bits (83), Expect = 8e-38 Identities = 168/198 (84%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 29 gacatgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgt 88 ||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||| | Sbjct: 200 gacatgccttcag-cttttgcgacgttatgaccacaaaccagaaagccaacgaggtcctt 258 Query: 89 tgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcgaagcatct 148 |||||||||||||||| ||||| ||||||| | |||||||||||| | ||||| Sbjct: 259 tgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcggaacatct 318 Query: 149 ctaaggaagagaccgtggaatatgtgcttgccctcattgatgagatgcttgcagggnatc 208 | |||||||| || || ||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 319 ccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgcagtaaatc 378 Query: 209 ctaaacgagcagnactgt 226 |||||||||||| ||||| Sbjct: 379 ctaaacgagcagcactgt 396
>dbj|AK067714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K21, full insert sequence Length = 1764 Score = 165 bits (83), Expect = 8e-38 Identities = 168/198 (84%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 29 gacatgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgt 88 ||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||| | Sbjct: 201 gacatgccttcag-cttttgcgacgttatgaccacaaaccagaaagccaacgaggtcctt 259 Query: 89 tgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcgaagcatct 148 |||||||||||||||| ||||| ||||||| | |||||||||||| | ||||| Sbjct: 260 tgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcggaacatct 319 Query: 149 ctaaggaagagaccgtggaatatgtgcttgccctcattgatgagatgcttgcagggnatc 208 | |||||||| || || ||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 320 ccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgcagtaaatc 379 Query: 209 ctaaacgagcagnactgt 226 |||||||||||| ||||| Sbjct: 380 ctaaacgagcagcactgt 397
>dbj|AK104331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D11, full insert sequence Length = 1694 Score = 157 bits (79), Expect = 2e-35 Identities = 167/198 (84%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 29 gacatgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgt 88 ||||||||||||| ||||| | ||||||| ||||||||||||||| || ||||||| | Sbjct: 200 gacatgccttcag-cttttgcgacgttatggccacaaaccagaaagccaacgaggtcctt 258 Query: 89 tgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcgaagcatct 148 |||||||||||||||| ||||| ||||||| | |||||||||||| | ||||| Sbjct: 259 tgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcggaacatct 318 Query: 149 ctaaggaagagaccgtggaatatgtgcttgccctcattgatgagatgcttgcagggnatc 208 | |||||||| || || ||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 319 ccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgcagtaaatc 378 Query: 209 ctaaacgagcagnactgt 226 |||||||||||| ||||| Sbjct: 379 ctaaacgagcagcactgt 396
>gb|AY108648.1| Zea mays PCO090155 mRNA sequence Length = 1795 Score = 103 bits (52), Expect = 3e-19 Identities = 169/210 (80%), Gaps = 1/210 (0%) Strand = Plus / Plus Query: 33 tgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgttgct 92 ||||||||| |||||| |||| |||||||||||||| || || ||| ||| ||| || || Sbjct: 236 tgccttcag-cttttacggcgatatgaccacaaaccggagagccagcgagctcctttact 294 Query: 93 tgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcgaagcatctctaa 152 ||| |||||||||||| | ||||| | | ||||||| || | |||||||| || Sbjct: 295 tgaggaggatggaccagcatatgtccgagttttcctgaatatcctgtggagcatctccaa 354 Query: 153 ggaagagaccgtggaatatgtgcttgccctcattgatgagatgcttgcagggnatcctaa 212 ||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||| Sbjct: 355 ggaagagactgttgaatacgtgcttgccctcattgatgaaatgcttgcgacaaatcctaa 414 Query: 213 acgagcagnactgtnttacgacaaatctct 242 ||| |||| ||||| |||||| ||||||| Sbjct: 415 acgtgcagcactgttttacgatcaatctct 444
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 129 gaatatcttgcgaagcatctctaaggaagagaccgtggaatatgtgcttgccctcattga 188 |||||||||||| | |||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 21764989 gaatatcttgcggaacatctccaaggaagatactgttgaatatgtgcttgccctgattga 21765048 Query: 189 tgagatgcttgcagg 203 ||||||||||||||| Sbjct: 21765049 tgagatgcttgcagg 21765063 Score = 71.9 bits (36), Expect = 9e-10 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 29 gacatgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgt 88 ||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||| | Sbjct: 21764695 gacatgccttcag-cttttgcgacgttatgaccacaaaccagaaagccaacgaggtcctt 21764753 Query: 89 tgcttgatgagg 100 |||||||||||| Sbjct: 21764754 tgcttgatgagg 21764765
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 129 gaatatcttgcgaagcatctctaaggaagagaccgtggaatatgtgcttgccctcattga 188 |||||||||||| | |||||| |||||||| || || ||||||||||||||||| ||||| Sbjct: 82172 gaatatcttgcggaacatctccaaggaagatactgttgaatatgtgcttgccctgattga 82231 Query: 189 tgagatgcttgcagg 203 ||||||||||||||| Sbjct: 82232 tgagatgcttgcagg 82246 Score = 71.9 bits (36), Expect = 9e-10 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 29 gacatgccttcagtcttttaaggcgttatgaccacaaaccagaaagtcagagaggtccgt 88 ||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||| | Sbjct: 81878 gacatgccttcag-cttttgcgacgttatgaccacaaaccagaaagccaacgaggtcctt 81936 Query: 89 tgcttgatgagg 100 |||||||||||| Sbjct: 81937 tgcttgatgagg 81948
>emb|AL390058.13| Human DNA sequence from clone RP11-345E19 on chromosome X, complete sequence Length = 147798 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 tatgaccacaaaccagaaagtcaga 79 |||||||||||| |||||||||||| Sbjct: 99625 tatgaccacaaatcagaaagtcaga 99649 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,461,718 Number of Sequences: 3902068 Number of extensions: 1461718 Number of successful extensions: 22847 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22828 Number of HSP's gapped (non-prelim): 19 length of query: 247 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 225 effective length of database: 17,147,199,772 effective search space: 3858119948700 effective search space used: 3858119948700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
