ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M09, full insert sequence Length = 1631 Score = 240 bits (121), Expect = 4e-60 Identities = 269/319 (84%) Strand = Plus / Plus Query: 228 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 287 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 374 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 433 Query: 288 atgctgttcccaccgacgccgctgcagaccccgatccagacaccacttccagggattgat 347 ||||||||||| ||||||||||| || |||||||||||||| || |||||||| | ||| Sbjct: 434 atgctgttccccccgacgccgctacaaaccccgatccagacccctcttccaggaacagat 493 Query: 348 acagggatgtataacatacccacagggccgtcggactatgccccatcgcccatcagtgac 407 |||||||||| ||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 494 gcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgac 553 Query: 408 atgagaaacgggatggggatgaatgggtctgatccaaaaactggccgcccaagcccttac 467 |||| || || |||| |||||||| |||||||||| ||||| ||||| || || ||| Sbjct: 554 gtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctac 613 Query: 468 atgcaacctccatcaccctggatgaatcagagaccactgggggttgatgtgaatgntgct 527 |||| || || || |||||||||| |||||| || ||||| ||||||||||||| ||| Sbjct: 614 atgcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcgct 673 Query: 528 tatgaggagagccgngagg 546 |||| ||||| ||| |||| Sbjct: 674 tatgtggagaaccgtgagg 692 Score = 159 bits (80), Expect = 1e-35 Identities = 143/164 (87%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| ||||| ||||| |||||||||||||||||||| || ||||||| || || | Sbjct: 150 gcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacg 209 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggctctctgggaaa 123 ||||||| | |||||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct: 210 acttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggcgctctgggaga 269 Query: 124 tgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 167 |||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 270 tgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 313
>gb|AY105474.1| Zea mays PCO117051 mRNA sequence Length = 1555 Score = 240 bits (121), Expect = 4e-60 Identities = 273/324 (84%) Strand = Plus / Plus Query: 208 ccggcgcgactccaccagtgcacgacctcaacgtgccctacgaggccacgtccgaggagt 267 ||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 295 ccggcacgacaccgccagtgcacgacctcaacgtgccgtacgaggccacatccgaggagt 354 Query: 268 acgccaccccaaccgccgacatgctgttcccaccgacgccgctgcagaccccgatccaga 327 |||||||||| ||||| |||||||||||||| ||||| || |||||||||| ||||||| Sbjct: 355 acgccaccccgaccgctgacatgctgttcccgccgacaccattgcagaccccaatccaga 414 Query: 328 caccacttccagggattgatacagggatgtataacatacccacagggccgtcggactatg 387 | || | ||||||| || ||||||||||| |||||||| || || || || || |||| Sbjct: 415 ctcctttgccagggacagacacagggatgtacaacatacctactggcccttccgattatg 474 Query: 388 ccccatcgcccatcagtgacatgagaaacgggatggggatgaatgggtctgatccaaaaa 447 ||||||| || ||||| || || || ||||||||| ||| |||||| | || |||||| Sbjct: 475 ccccatcaccgatcagcgatatcaggaacgggatgacgataaatggggcagacccaaaag 534 Query: 448 ctggccgcccaagcccttacatgcaacctccatcaccctggatgaatcagagaccactgg 507 ||||||| ||||| |||||||||| ||| || || || |||||||||||||| || |||| Sbjct: 535 ctggccgtccaagtccttacatgccaccaccttccccttggatgaatcagaggccgctgg 594 Query: 508 gggttgatgtgaatgntgcttatg 531 | ||||||||||||| ||||||| Sbjct: 595 gtgttgatgtgaatgtcgcttatg 618 Score = 168 bits (85), Expect = 1e-38 Identities = 139/157 (88%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| |||||||||||||||||||||||||| ||||| || ||||||| || |||| Sbjct: 97 gcaacgtctccaccgtctacatctccgtcatcgatgacgtcatctccaaggtccgcgagg 156 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggctctctgggaaa 123 | ||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| | Sbjct: 157 atttcatcacctacggagtcggcgacgccgtcctaaacgagctccaggctctctgggaga 216 Query: 124 tgaagatgctgcactgtggcgcaatctcagggaacat 160 |||| ||||||||||||||||| ||||| |||||||| Sbjct: 217 tgaaaatgctgcactgtggcgcgatctcggggaacat 253
>gb|BT018530.1| Zea mays clone EL01N0434A06.d mRNA sequence Length = 1595 Score = 234 bits (118), Expect = 2e-58 Identities = 272/324 (83%) Strand = Plus / Plus Query: 208 ccggcgcgactccaccagtgcacgacctcaacgtgccctacgaggccacgtccgaggagt 267 ||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 315 ccggcacgacaccgccagtgcacgacctcaacgtgccgtacgaggccacatccgaggagt 374 Query: 268 acgccaccccaaccgccgacatgctgttcccaccgacgccgctgcagaccccgatccaga 327 |||||||||| ||||| |||||||||||||| ||||| || |||||||||| ||||||| Sbjct: 375 acgccaccccgaccgctgacatgctgttcccgccgacaccattgcagaccccaatccaga 434 Query: 328 caccacttccagggattgatacagggatgtataacatacccacagggccgtcggactatg 387 | || | ||||||| || ||||||||||| |||||||| || || || || || |||| Sbjct: 435 ctcctttgccagggacagacacagggatgtacaacatacctactggcccttccgattatg 494 Query: 388 ccccatcgcccatcagtgacatgagaaacgggatggggatgaatgggtctgatccaaaaa 447 ||||||| || ||||| || || || ||||||||| ||| |||||| | || |||||| Sbjct: 495 ccccatcaccgatcagcgatatcaggaacgggatgacgataaatggggcagacccaaaag 554 Query: 448 ctggccgcccaagcccttacatgcaacctccatcaccctggatgaatcagagaccactgg 507 ||||||| ||||| |||||||||| ||| || || || ||||||||||| || || |||| Sbjct: 555 ctggccgtccaagtccttacatgccaccaccttccccttggatgaatcanaggccgctgg 614 Query: 508 gggttgatgtgaatgntgcttatg 531 | ||||||||||||| ||||||| Sbjct: 615 gtgttgatgtgaatgtcgcttatg 638 Score = 168 bits (85), Expect = 1e-38 Identities = 139/157 (88%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| |||||||||||||||||||||||||| ||||| || ||||||| || |||| Sbjct: 117 gcaacgtctccaccgtctacatctccgtcatcgatgacgtcatctccaaggtccgcgagg 176 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggctctctgggaaa 123 | ||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| | Sbjct: 177 atttcatcacctacggagtcggcgacgccgtcctaaacgagctccaggctctctgggaga 236 Query: 124 tgaagatgctgcactgtggcgcaatctcagggaacat 160 |||| ||||||||||||||||| ||||| |||||||| Sbjct: 237 tgaaaatgctgcactgtggcgcgatctcggggaacat 273
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 302 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 361 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 30678 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 30737 Query: 362 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 421 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 30738 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 30797 Query: 422 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 470 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 30798 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 30846 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 228 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 287 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 30476 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 30535 Query: 288 atgctgttccc 298 ||||||||||| Sbjct: 30536 atgctgttccc 30546 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| ||||| ||||| |||||||||||||||||||| || ||||||| || || | Sbjct: 30142 gcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacg 30201 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 112 ||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 30202 acttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 30250 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 114 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 167 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 30362 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 30415 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 483 ccctggatgaatcagagaccactgggggttgatgtgaatg 522 |||||||||| |||||| || ||||| ||||||||||||| Sbjct: 30939 ccctggatgactcagaggccgctgggcgttgatgtgaatg 30978
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 302 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 361 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 103506 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 103565 Query: 362 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 421 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 103566 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 103625 Query: 422 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 470 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 103626 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 103674 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 228 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 287 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 103304 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 103363 Query: 288 atgctgttccc 298 ||||||||||| Sbjct: 103364 atgctgttccc 103374 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| ||||| ||||| |||||||||||||||||||| || ||||||| || || | Sbjct: 102970 gcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacg 103029 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 112 ||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 103030 acttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 103078 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 114 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 167 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 103190 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 103243 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 483 ccctggatgaatcagagaccactgggggttgatgtgaatg 522 |||||||||| |||||| || ||||| ||||||||||||| Sbjct: 103767 ccctggatgactcagaggccgctgggcgttgatgtgaatg 103806
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 2e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 302 gacgccgctgcagaccccgatccagacaccacttccagggattgatacagggatgtataa 361 ||||||||| || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct: 12733219 gacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaa 12733278 Query: 362 catacccacagggccgtcggactatgccccatcgcccatcagtgacatgagaaacgggat 421 ||| ||||| ||||| || ||||||||||| || || ||||||||| |||| || || || Sbjct: 12733279 cattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcat 12733338 Query: 422 ggggatgaatgggtctgatccaaaaactggccgcccaagcccttacatg 470 || |||||||| |||||||||| ||||| ||||| || || |||||| Sbjct: 12733339 ggccatgaatggagctgatccaaagactggtcgcccgagtccctacatg 12733387 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 228 cacgacctcaacgtgccctacgaggccacgtccgaggagtacgccaccccaaccgccgac 287 |||||||| |||||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct: 12733017 cacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggac 12733076 Query: 288 atgctgttccc 298 ||||||||||| Sbjct: 12733077 atgctgttccc 12733087 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| ||||| ||||| |||||||||||||||||||| || ||||||| || || | Sbjct: 12732683 gcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacg 12732742 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggc 112 ||||||| | |||||||| ||||| || ||||||||||| |||||||| Sbjct: 12732743 acttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggc 12732791 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 114 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccgc 167 |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct: 12732903 ctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgc 12732956 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 483 ccctggatgaatcagagaccactgggggttgatgtgaatg 522 |||||||||| |||||| || ||||| ||||||||||||| Sbjct: 12733480 ccctggatgactcagaggccgctgggcgttgatgtgaatg 12733519
>emb|AJ293478.1|SHY293478 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR5 Length = 456 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 4 gcaacgtgtccaccgtctacatctccgtcatcgacgacgttgtcgccaaggttcgtgagg 63 ||||||| ||||||||||||||||| ||||| || ||||| || ||||||| || |||| Sbjct: 343 gcaacgtctccaccgtctacatctctgtcattgatgacgtcatctccaaggtccgcgagg 284 Query: 64 acttcattacctacggcgttggcgatgccgtcctcaacgaactccaggct 113 | ||||| |||||||| || ||||| |||||||| ||||| ||||||||| Sbjct: 283 atttcatcacctacggagtcggcgacgccgtcctaaacgagctccaggct 234 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 114 ctctgggaaatgaagatgctgcactgtggcgcaatctcagggaacatcgaccg 166 |||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||| Sbjct: 127 ctctgggagatgaaaatgctgcactgtggcgcgatctcggggaacatagaccg 75 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 208 ccggcgcgactccaccagtgcacgacctcaacgtgcc 244 ||||| |||| || || |||||||||||||||||||| Sbjct: 39 ccggcacgacaccgcccgtgcacgacctcaacgtgcc 3
>gb|AC006357.5| Homo sapiens PAC clone RP5-1121A15 from 7, complete sequence Length = 130492 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 aatgaagatgctgcactgtgg 142 ||||||||||||||||||||| Sbjct: 75992 aatgaagatgctgcactgtgg 76012
>gb|AY126484.1| Moira clotho bindin precursor, mRNA, partial cds Length = 1403 Score = 42.1 bits (21), Expect = 1.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 61 aggacttcattacctacggcgttggcg 87 ||||||||||| | ||||||||||||| Sbjct: 1151 aggacttcattrcgtacggcgttggcg 1125
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 catcaccctggatgaatcaga 498 ||||||||||||||||||||| Sbjct: 35058077 catcaccctggatgaatcaga 35058057
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 catcaccctggatgaatcaga 498 ||||||||||||||||||||| Sbjct: 65227 catcaccctggatgaatcaga 65207
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 catcaccctggatgaatcaga 498 ||||||||||||||||||||| Sbjct: 102305 catcaccctggatgaatcaga 102285
>dbj|AK060539.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E03, full insert sequence Length = 1530 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 catcaccctggatgaatcaga 498 ||||||||||||||||||||| Sbjct: 1157 catcaccctggatgaatcaga 1177
>ref|XM_754841.1| Ustilago maydis 521 hypothetical protein (UM03787.1) partial mRNA Length = 1143 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ccaccgacgccgctgcagac 316 |||||||||||||||||||| Sbjct: 98 ccaccgacgccgctgcagac 117
>ref|XM_756021.1| Ustilago maydis 521 hypothetical protein (UM04967.1) partial mRNA Length = 2064 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 cgacgacgttgtcgccaagg 54 |||||||||||||||||||| Sbjct: 1965 cgacgacgttgtcgccaagg 1984
>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence Length = 283075 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 ctctgggaaatgaagatgctgcac 137 ||||||||||||||| |||||||| Sbjct: 255590 ctctgggaaatgaagctgctgcac 255567
>emb|AL592203.4| Human DNA sequence from clone RP11-268N1 on chromosome 1, complete sequence Length = 181535 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tgcaacctccatcaccctgg 488 |||||||||||||||||||| Sbjct: 99462 tgcaacctccatcaccctgg 99481
>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two novel genes and a CpG island, complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tgcaacctccatcaccctgg 488 |||||||||||||||||||| Sbjct: 33095 tgcaacctccatcaccctgg 33114
>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0099J16, complete sequence Length = 133198 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tccagggattgatacaggga 354 |||||||||||||||||||| Sbjct: 45167 tccagggattgatacaggga 45148
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 tggcgatgccgtcctcaacgaact 106 |||||||||||||||||| ||||| Sbjct: 4075572 tggcgatgccgtcctcaaagaact 4075595
>emb|AJ006307.2|RSP6307 Ralstonia sp. JS705 clcR, clcA, mcbF, mcbAa, mcbAb, mcbAc, mcbAd and mcbB genes Length = 12483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tcaacgtgccctacgaggcc 254 |||||||||||||||||||| Sbjct: 4345 tcaacgtgccctacgaggcc 4364
>gb|AC023683.4| Drosophila melanogaster X BAC RP98-29G2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160194 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ggtgctcctggtgccggcgc 214 |||||||||||||||||||| Sbjct: 103022 ggtgctcctggtgccggcgc 103003
>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159902 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tgcaacctccatcaccctgg 488 |||||||||||||||||||| Sbjct: 113078 tgcaacctccatcaccctgg 113059
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 cggcgttggcgatgccgtcc 96 |||||||||||||||||||| Sbjct: 1853448 cggcgttggcgatgccgtcc 1853467
>ref|NM_167229.1| Drosophila melanogaster flap wing CG2096-RA, transcript variant A (flw), mRNA Length = 2571 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggtgctcctggtgccggcgc 214 |||||||||||||||||||| Sbjct: 811 ggtgctcctggtgccggcgc 830
>gb|AY069047.1| Drosophila melanogaster GH05039 full length cDNA Length = 2727 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggtgctcctggtgccggcgc 214 |||||||||||||||||||| Sbjct: 967 ggtgctcctggtgccggcgc 986
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tccagggattgatacaggga 354 |||||||||||||||||||| Sbjct: 25959799 tccagggattgatacaggga 25959818
>gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 of 74 of the complete sequence Length = 232514 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggtgctcctggtgccggcgc 214 |||||||||||||||||||| Sbjct: 134278 ggtgctcctggtgccggcgc 134297
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tccagggattgatacaggga 354 |||||||||||||||||||| Sbjct: 26278497 tccagggattgatacaggga 26278516
>dbj|AB215544.1| Equus caballus DNA, microsatellite TKY1601 Length = 199 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gaaatgaagatgctgcactg 139 |||||||||||||||||||| Sbjct: 179 gaaatgaagatgctgcactg 198
>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete sequence Length = 144844 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ctctgggaaatgaagatgctgcac 137 ||||||||||||||| |||||||| Sbjct: 16672 ctctgggaaatgaagctgctgcac 16695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,357,136 Number of Sequences: 3902068 Number of extensions: 3357136 Number of successful extensions: 72615 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72435 Number of HSP's gapped (non-prelim): 180 length of query: 546 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 523 effective length of database: 17,143,297,704 effective search space: 8965944699192 effective search space used: 8965944699192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
