ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24n05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019113.1| Zea mays clone Contig720.F mRNA sequence Length = 865 Score = 99.6 bits (50), Expect = 2e-18 Identities = 106/126 (84%) Strand = Plus / Plus Query: 1 gaggcagaattcgtccagctgtctgttagaagacatctacngaaaccctggaccactcca 60 |||||||||||| ||||| | | |||| ||||| ||||| | ||||| || || ||||| Sbjct: 222 gaggcagaattcttccaggtttttgttggaagatgtctacaggaacccaggtccgctcca 281 Query: 61 anttgaaggaccaggtgcggatgccaagcctattncantgtgcgtcgaggatcaagacta 120 |||||||||||||||| ||| | |||||||| || |||||||||||||||||||||| Sbjct: 282 gtttgaaggaccaggtgccgattcaaagcctatctcactgtgcgtcgaggatcaagacta 341 Query: 121 catggg 126 |||||| Sbjct: 342 catggg 347
>gb|BT024035.1| Zea mays clone EL01N0425C12 mRNA sequence Length = 2016 Score = 99.6 bits (50), Expect = 2e-18 Identities = 103/122 (84%) Strand = Plus / Plus Query: 5 cagaattcgtccagctgtctgttagaagacatctacngaaaccctggaccactccaantt 64 |||||||| ||||||| | |||| ||||| ||||| ||||||| || || ||||| || Sbjct: 1468 cagaattcttccagctttttgttggaagatgtctacagaaacccaggcccgctccagttt 1527 Query: 65 gaaggaccaggtgcggatgccaagcctattncantgtgcgtcgaggatcaagactacatg 124 |||||||||||||| ||| | ||||||||| || ||||||| |||||||||||||| ||| Sbjct: 1528 gaaggaccaggtgccgattcaaagcctatttcattgtgcgttgaggatcaagactatatg 1587 Query: 125 gg 126 || Sbjct: 1588 gg 1589
>ref|XM_467453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2187 Score = 93.7 bits (47), Expect = 1e-16 Identities = 82/95 (86%) Strand = Plus / Plus Query: 32 gacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaagcct 91 ||||||||| ||||||| |||||||||||| | |||||| ||||||| ||| | |||||| Sbjct: 1709 gacatctacagaaacccaggaccactccaattcgaaggagcaggtgctgattcaaagcct 1768 Query: 92 attncantgtgcgtcgaggatcaagactacatggg 126 ||| || ||||||| || ||||||||||| ||||| Sbjct: 1769 atttcactgtgcgtggaagatcaagactatatggg 1803
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 1e-16 Identities = 82/95 (86%) Strand = Plus / Minus Query: 32 gacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaagcct 91 ||||||||| ||||||| |||||||||||| | |||||| ||||||| ||| | |||||| Sbjct: 29623538 gacatctacagaaacccaggaccactccaattcgaaggagcaggtgctgattcaaagcct 29623479 Query: 92 attncantgtgcgtcgaggatcaagactacatggg 126 ||| || ||||||| || ||||||||||| ||||| Sbjct: 29623478 atttcactgtgcgtggaagatcaagactatatggg 29623444
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1479_B12 Length = 127089 Score = 93.7 bits (47), Expect = 1e-16 Identities = 82/95 (86%) Strand = Plus / Minus Query: 32 gacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaagcct 91 ||||||||| ||||||| |||||||||||| | |||||| ||||||| ||| | |||||| Sbjct: 81259 gacatctacagaaacccaggaccactccaattcgaaggagcaggtgctgattcaaagcct 81200 Query: 92 attncantgtgcgtcgaggatcaagactacatggg 126 ||| || ||||||| || ||||||||||| ||||| Sbjct: 81199 atttcactgtgcgtggaagatcaagactatatggg 81165
>dbj|AK070279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A11, full insert sequence Length = 2186 Score = 93.7 bits (47), Expect = 1e-16 Identities = 82/95 (86%) Strand = Plus / Plus Query: 32 gacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaagcct 91 ||||||||| ||||||| |||||||||||| | |||||| ||||||| ||| | |||||| Sbjct: 1708 gacatctacagaaacccaggaccactccaattcgaaggagcaggtgctgattcaaagcct 1767 Query: 92 attncantgtgcgtcgaggatcaagactacatggg 126 ||| || ||||||| || ||||||||||| ||||| Sbjct: 1768 atttcactgtgcgtggaagatcaagactatatggg 1802
>gb|AY103649.1| Zea mays PCO110217 mRNA sequence Length = 1532 Score = 91.7 bits (46), Expect = 5e-16 Identities = 102/122 (83%) Strand = Plus / Plus Query: 5 cagaattcgtccagctgtctgttagaagacatctacngaaaccctggaccactccaantt 64 |||||||| ||||||| | |||| ||||| ||||| | ||||| || || ||||| || Sbjct: 918 cagaattcttccagctttttgttggaagatgtctacaggaacccaggcccgctccagttt 977 Query: 65 gaaggaccaggtgcggatgccaagcctattncantgtgcgtcgaggatcaagactacatg 124 |||||||||||||| ||| | ||||||||| || ||||||| |||||||||||||| ||| Sbjct: 978 gaaggaccaggtgccgattcaaagcctatttcattgtgcgttgaggatcaagactatatg 1037 Query: 125 gg 126 || Sbjct: 1038 gg 1039
>gb|BT017003.1| Zea mays clone EK07D2310A04.c mRNA sequence Length = 515 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Plus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| ||||| || | ||||| ||||||| ||| | ||| Sbjct: 92 gaagacatctaccgaaaccctgggccacttcagttcgaagggtcaggtgctgatacaaag 151 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 |||||| || ||||||| || ||||| || |||||||| Sbjct: 152 cctatttcattgtgcgttgaagatcaggattacatggg 189
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Plus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| || || ||| |||| |||||||||| || | ||| Sbjct: 12642263 gaagacatctacagaaaccctggtcctctgcaatttgagggaccaggtggagagacaaag 12642322 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 || ||| || |||| ||||| |||| |||||||||||| Sbjct: 12642323 ccgatttcattgtgtgtcgaagatcgagactacatggg 12642360
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Plus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| || || ||| |||| |||||||||| || | ||| Sbjct: 124576 gaagacatctacagaaaccctggtcctctgcaatttgagggaccaggtggagagacaaag 124635 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 || ||| || |||| ||||| |||| |||||||||||| Sbjct: 124636 ccgatttcattgtgtgtcgaagatcgagactacatggg 124673
>dbj|AK121116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073P04, full insert sequence Length = 2308 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Plus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| || || ||| |||| |||||||||| || | ||| Sbjct: 1702 gaagacatctacagaaaccctggtcctctgcaatttgagggaccaggtggagagacaaag 1761 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 || ||| || |||| ||||| |||| |||||||||||| Sbjct: 1762 ccgatttcattgtgtgtcgaagatcgagactacatggg 1799
>dbj|AK065052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I21, full insert sequence Length = 2283 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Plus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| || || ||| |||| |||||||||| || | ||| Sbjct: 1702 gaagacatctacagaaaccctggtcctctgcaatttgagggaccaggtggagagacaaag 1761 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 || ||| || |||| ||||| |||| |||||||||||| Sbjct: 1762 ccgatttcattgtgtgtcgaagatcgagactacatggg 1799
>gb|AY111144.1| Zea mays CL5972_1 mRNA sequence Length = 639 Score = 67.9 bits (34), Expect = 7e-09 Identities = 81/98 (82%) Strand = Plus / Minus Query: 29 gaagacatctacngaaaccctggaccactccaanttgaaggaccaggtgcggatgccaag 88 |||||||||||| |||||||||| ||||| || | ||||| ||||||| ||| | ||| Sbjct: 448 gaagacatctaccgaaaccctgggccacttcagttcgaagggtcaggtgctgatacaaag 389 Query: 89 cctattncantgtgcgtcgaggatcaagactacatggg 126 |||||| || ||||||| || ||||| || |||||||| Sbjct: 388 cctatttcattgtgcgttgaagatcaggattacatggg 351
>gb|AC133946.3| Mus musculus BAC clone RP24-188D7 from chromosome 17, complete sequence Length = 170090 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 gaaggaccaggtgcggatg 83 ||||||||||||||||||| Sbjct: 144045 gaaggaccaggtgcggatg 144063
>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete sequence Length = 216044 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 gaaggaccaggtgcggatg 83 ||||||||||||||||||| Sbjct: 7840 gaaggaccaggtgcggatg 7858
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 aaggaccaggtgcggatgc 84 ||||||||||||||||||| Sbjct: 1942800 aaggaccaggtgcggatgc 1942782 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 540,369 Number of Sequences: 3902068 Number of extensions: 540369 Number of successful extensions: 32551 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32506 Number of HSP's gapped (non-prelim): 41 length of query: 126 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 105 effective length of database: 17,151,101,840 effective search space: 1800865693200 effective search space used: 1800865693200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
