Clone Information

BLAST Search Result

Clone Name	bags25b17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY106277.1\| Zea mays PCO097025 mRNA sequence	200	4e-48
2	ref\|XM_472837.1\| Oryza sativa (japonica cultivar-group), predic...	121	3e-24
3	gb\|BT018955.1\| Zea mays clone Contig157.F mRNA sequence	74	6e-10
4	emb\|AL606447.3\|OSJN00011 Oryza sativa genomic DNA, chromosome 4,...	74	6e-10
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	6e-10
6	gb\|BT017663.1\| Zea mays clone EL01N0440H02.c mRNA sequence	48	0.034
7	emb\|AL929399.6\| Mouse DNA sequence from clone RP23-59E24 on chro...	46	0.14
8	ref\|XM_483229.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.53
9	gb\|AC111733.5\| Rattus norvegicus 13 BAC CH230-170L19 (Children's...	44	0.53
10	gb\|AC167666.4\| Culex pipiens quinquefasciatus, clone Culex pipie...	42	2.1
11	emb\|AL163280.2\|HS21C080 Homo sapiens chromosome 21 segment HS21C080	42	2.1
12	gb\|AY246751.1\| Equus caballus manganese superoxide dismutase (Mn...	42	2.1
13	emb\|AL691520.7\| Human DNA sequence from clone RP11-520E6 on chro...	42	2.1
14	emb\|AL596275.10\| Human DNA sequence from clone RP11-183G22 on ch...	42	2.1
15	emb\|AL391728.19\| Human DNA sequence from clone RP11-423A18 on ch...	42	2.1
16	emb\|AL358949.16\| Human DNA sequence from clone RP11-302K6 on chr...	42	2.1
17	emb\|AL136300.22\| Human DNA sequence from clone RP11-10G5 on chro...	42	2.1
18	emb\|AL035530.11\|HS111C20 Human DNA sequence from clone RP1-111C2...	42	2.1
19	gb\|AC084083.10\| Homo sapiens chromosome 8, clone RP11-550A5, com...	42	2.1
20	gb\|AF064860.2\| Homo sapiens chromosome 21 clone PAC 70I24 map 21...	42	2.1
21	emb\|AL954227.3\|RP43002I19 Pan troglodytes chromosome 22 BAC RP43...	42	2.1
22	emb\|AL954140.7\| Mouse DNA sequence from clone RP23-52I15 on chro...	42	2.1
23	gb\|AF179296.2\| Homo sapiens chromosome 8 clone RP4-678C5 map 8q2...	42	2.1
24	gb\|AC104431.2\| Homo sapiens chromosome 8 clone RP11-550A5 map 8q...	42	2.1
25	dbj\|AB001693.1\| Equus caballus Mn-SOD mRNA for manganese superox...	42	2.1
26	gb\|AF041002.1\|HSPPLG4 Homo sapiens periplakin (PPL) gene, exon 3	40	8.3
27	gb\|AE017356.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.3
28	gb\|AC004764.1\| Homo sapiens chromosome 5, P1 clone 255g5 (LBNL H...	40	8.3
29	ref\|XM_416946.1\| PREDICTED: Gallus gallus similar to Guanine nuc...	40	8.3
30	ref\|XM_848172.1\| PREDICTED: Canis familiaris similar to alpha 3 ...	40	8.3
31	emb\|BX571772.8\| Zebrafish DNA sequence from clone CH211-238E12 i...	40	8.3
32	ref\|XM_568739.1\| Cryptococcus neoformans var. neoformans JEC21 g...	40	8.3
33	gb\|AC122692.4\| Homo sapiens X BAC RP13-675A2 (Roswell Park Cance...	40	8.3
34	emb\|Z35600.1\|CEF37A8 Caenorhabditis elegans Cosmid F37A8, comple...	40	8.3
35	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	40	8.3
36	emb\|AL158208.14\| Human DNA sequence from clone RP11-55P21 on chr...	40	8.3
37	emb\|AL136179.15\| Human DNA sequence from clone RP3-322L4 on chro...	40	8.3
38	emb\|AL109800.25\|HSDA64P14 Human DNA sequence from clone RP6-64P1...	40	8.3
39	gb\|AC154620.2\| Mus musculus BAC clone RP23-323M20 from chromosom...	40	8.3
40	gb\|AC104148.5\| Drosophila melanogaster X BAC RP98-34O3 (Roswell ...	40	8.3
41	gb\|AC108517.3\| Homo sapiens BAC clone RP11-622J8 from 4, complet...	40	8.3
42	gb\|AC098575.6\| Drosophila melanogaster X BAC RP98-3D13 (Roswell ...	40	8.3
43	gb\|AC093600.3\| Homo sapiens BAC clone RP11-333E5 from 4, complet...	40	8.3
44	gb\|AC011626.8\| Homo sapiens chromosome 8, clone RP11-369K17, com...	40	8.3
45	emb\|BX784023.10\| Zebrafish DNA sequence from clone DKEY-163F12 i...	40	8.3
46	emb\|CR406812.1\| Gallus gallus finished cDNA, clone ChEST733k17	40	8.3
47	gb\|AC008784.7\| Homo sapiens chromosome 5 clone CTD-2028D11, comp...	40	8.3
48	emb\|CR352762.1\| Gallus gallus finished cDNA, clone ChEST103i7	40	8.3
49	gb\|AC139019.3\| Homo sapiens chromosome 8, clone CTD-3091F23, com...	40	8.3
50	gb\|AC027687.7\| Homo sapiens chromosome 16 clone RP11-61L4, compl...	40	8.3
51	gb\|AC073902.3\| Homo sapiens BAC clone RP11-228F17 from 2, comple...	40	8.3
52	gb\|AC008670.6\| Homo sapiens chromosome 5 clone CTB-36O1, complet...	40	8.3
53	gb\|AC106042.2\| Homo sapiens BAC clone RP11-16O23 from 2, complet...	40	8.3
54	emb\|BX088579.5\| Zebrafish DNA sequence from clone CH211-198C19 i...	40	8.3
55	emb\|AL132718.5\|CNS01DTG Human chromosome 14 DNA sequence BAC R-6...	40	8.3
56	gb\|AE003425.3\| Drosophila melanogaster chromosome X, section 9 o...	40	8.3
57	gb\|AC169087.3\| Gallus gallus BAC clone CH261-119D18 from chromos...	40	8.3
58	dbj\|AP001804.5\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.3
59	gb\|AC163704.4\| Gallus gallus BAC clone CH261-114A20 from chromos...	40	8.3
60	dbj\|AP002965.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.3
61	emb\|Z77666.1\|CEK08E7 Caenorhabditis elegans Cosmid K08E7, comple...	40	8.3
62	dbj\|AB053170.3\| Homo sapiens genomic DNA, chromosome 4p15.3, BAC...	40	8.3
63	gb\|AC002556.1\|AC002556 Human Chromosome 11q25 PAC clone pDJ9j14,...	40	8.3
64	dbj\|AP005664.3\| Homo sapiens genomic DNA, chromosome 8q24, clone...	40	8.3
65	emb\|Z83109.1\|CEF44G3 Caenorhabditis elegans Cosmid F44G3, comple...	40	8.3
66	emb\|AL031366.1\|DMC100G7 Drosophila melanogaster cosmid clone 100G7	40	8.3

>gb|AY106277.1| Zea mays PCO097025 mRNA sequence
          Length = 884

 Score =  200 bits (101), Expect = 4e-48
 Identities = 224/265 (84%)
 Strand = Plus / Plus

                                                                       
Query: 322 ctacaggccaacctgaaagtgcccctgattctagaactgtctttgttagcaatgtacatt 381
           ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 45  ctacaggccaacctgaaggtggccctgattctagaactgtctttgttagtaatgtacatt 104

                                                                       
Query: 382 ttggcgcaacaaaagatggtctttcttgtcatttcaacaagtttggggccgtgctaaaaa 441
           ||||  || ||||||||| ||||||| |||| ||||| |||||||| || ||  |||| |
Sbjct: 105 ttggttcatcaaaagatgctctttctcgtcacttcaataagtttggagcggtcttaaaga 164

                                                                       
Query: 442 ctcttattgtatctgatggtgccactggtcaaccaacaggctcagcgtacatcgaattct 501
           | | ||||||  ||||||||| |||||||||  |||| |||||||| || || || || |
Sbjct: 165 cccatattgtgactgatggtgtcactggtcagtcaactggctcagcatatattgagtttt 224

                                                                       
Query: 502 tggaaaaagaatctgcagagaaggcgctaacgctgaatggaacatcttttatgtcacgca 561
           || | |||||||| |||||  ||||  |||| ||||| || ||||| |||||||||||||
Sbjct: 225 tgcacaaagaatcagcagaacaggcattaaccctgaacgggacatcatttatgtcacgca 284

                                    
Query: 562 ttttgaaggttgttcgaaaaagctc 586
           |||||||||| ||||| ||||||||
Sbjct: 285 ttttgaaggtcgttcggaaaagctc 309

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>ref|XM_472837.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2073

 Score =  121 bits (61), Expect = 3e-24
 Identities = 147/175 (84%), Gaps = 3/175 (1%)
 Strand = Plus / Plus

                                                                        
Query: 346  ctgattctagaactgtctttgttagcaatgtacattttggcgcaacaaaagatggtcttt 405
            ||||||||||||| || ||| ||  ||||||||||||||  || |||||||||| |||||
Sbjct: 1535 ctgattctagaacagtttttctttccaatgtacattttgctgctacaaaagatgctcttt 1594

                                                                        
Query: 406  cttgtcatttcaacaagtttggggccgtgctaaaaactcttattgtatctgatggtgcca 465
            |  |||||||||| |||||||| || ||||| ||||||||||||||  |||||  ||   
Sbjct: 1595 cccgtcatttcaataagtttggagctgtgcttaaaactcttattgtgactgatattg--- 1651

                                                                   
Query: 466  ctggtcaaccaacaggctcagcgtacatcgaattcttggaaaaagaatctgcaga 520
            ||||||| |||||||||||||||||||| ||||||||| | ||||| || |||||
Sbjct: 1652 ctggtcagccaacaggctcagcgtacattgaattcttgcacaaagagtcagcaga 1706

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>gb|BT018955.1| Zea mays clone Contig157.F mRNA sequence
          Length = 803

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                       
Query: 344 ccctgattctagaactgtctttgttagcaatgtacattttggcgcaacaaaagatggtct 403
           ||||||||||||||||| ||||||||| ||||||||||||||  || ||||||||| || 
Sbjct: 4   ccctgattctagaactggctttgttagtaatgtacattttggttcatcaaaagatgctcc 63

                                                                       
Query: 404 ttcttgtcatttcaacaagtttggggccgtgctaaaaactcttattgtatctgatggtgc 463
           ||||   || ||||| |||||||| || ||  |||| || | ||||||  ||||||||| 
Sbjct: 64  ttctcaacacttcaataagtttggagcggtcttaaagacccatattgtgactgatggtgt 123

                
Query: 464 cactg 468
           |||||
Sbjct: 124 cactg 128



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                       
Query: 507 aaagaatctgcagagaaggcgctaacgctgaatggaacatcttttatgtcacgcattttg 566
           |||||||| |||||  ||||  |||| ||||| || ||||| ||||||||||||||||||
Sbjct: 154 aaagaatcagcagaacaggcattaaccctgaacgggacatcatttatgtcacgcattttg 213

                               
Query: 567 aaggttgttcgaaaaagctc 586
           ||||| ||||| ||||||||
Sbjct: 214 aaggtcgttcggaaaagctc 233

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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                         
Query: 375   gtacattttggcgcaacaaaagatggtctttcttgtcatttcaacaagtttggggccgtg 434
             ||||||||||  || |||||||||| ||||||  |||||||||| |||||||| || |||
Sbjct: 40163 gtacattttgctgctacaaaagatgctctttcccgtcatttcaataagtttggagctgtg 40222

                              
Query: 435   ctaaaaactcttattgt 451
             || ||||||||||||||
Sbjct: 40223 cttaaaactcttattgt 40239



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 481   gctcagcgtacatcgaattcttggaaaaagaatctgcaga 520
             ||||||||||||| ||||||||| | ||||| || |||||
Sbjct: 40361 gctcagcgtacattgaattcttgcacaaagagtcagcaga 40400

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                            
Query: 375      gtacattttggcgcaacaaaagatggtctttcttgtcatttcaacaagtttggggccgtg 434
                ||||||||||  || |||||||||| ||||||  |||||||||| |||||||| || |||
Sbjct: 23597482 gtacattttgctgctacaaaagatgctctttcccgtcatttcaataagtttggagctgtg 23597541

                                 
Query: 435      ctaaaaactcttattgt 451
                || ||||||||||||||
Sbjct: 23597542 cttaaaactcttattgt 23597558



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 481      gctcagcgtacatcgaattcttggaaaaagaatctgcaga 520
                ||||||||||||| ||||||||| | ||||| || |||||
Sbjct: 23597680 gctcagcgtacattgaattcttgcacaaagagtcagcaga 23597719

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>gb|BT017663.1| Zea mays clone EL01N0440H02.c mRNA sequence
          Length = 679

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 523 aggcgctaacgctgaatggaacatcttttatgtcacgcattttgaaggttgttcgaaaaa 582
           ||||| |||| ||||| ||  |||| ||||||| ||||||||||||||| ||||| ||||
Sbjct: 12  aggcgttaaccctgaacggggcatcatttatgttacgcattttgaaggtcgttcggaaaa 71

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>emb|AL929399.6| Mouse DNA sequence from clone RP23-59E24 on chromosome 4, complete
             sequence
          Length = 120490

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 138   attgcaagaaatgctggcacatt 160
             |||||||||||||||||||||||
Sbjct: 13662 attgcaagaaatgctggcacatt 13640

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>ref|XM_483229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2900

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                        
Query: 351  tctagaactgtctttgttagcaatgtacattttggcgcaacaaaagatggtctttcttgt 410
            ||||||||  ||| |||||||||||| |||||||| || || || || |  || ||| | 
Sbjct: 1834 tctagaaccctctatgttagcaatgttcattttggtgccaccaaggacgcgctatctcgc 1893

                                      
Query: 411  catttcaacaagtttggggccgtgct 436
            ||||||||||||||||| || |||||
Sbjct: 1894 catttcaacaagtttggtgcggtgct 1919

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>gb|AC111733.5| Rattus norvegicus 13 BAC CH230-170L19 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 138366

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 250  ataaatccaaagacctggtgca 271
            ||||||||||||||||||||||
Sbjct: 6905 ataaatccaaagacctggtgca 6884

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>gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940120D9, complete sequence
          Length = 115819

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 371    caatgtacattttggcgcaac 391
              |||||||||||||||||||||
Sbjct: 108733 caatgtacattttggcgcaac 108753

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>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 401    tctttcttgtcatttcaacaa 421
              |||||||||||||||||||||
Sbjct: 157398 tctttcttgtcatttcaacaa 157378

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>gb|AY246751.1| Equus caballus manganese superoxide dismutase (Mn-SOD) mRNA, 3' UTR
           and partial cds
          Length = 526

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 tgcactcaagttcattggtggaggc 292
           |||||||||||||| ||||||||||
Sbjct: 53  tgcactcaagttcaatggtggaggc 77

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>emb|AL691520.7| Human DNA sequence from clone RP11-520E6 on chromosome 1 Contains the 5'
              end of a novel gene, complete sequence
          Length = 201493

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 401    tctttcttgtcatttcaacaa 421
              |||||||||||||||||||||
Sbjct: 198892 tctttcttgtcatttcaacaa 198872

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>emb|AL596275.10| Human DNA sequence from clone RP11-183G22 on chromosome 1 Contains a
             ribosomal protein S2 (RPS2) pseudogene, a high-mobility
             group box 1 (HMGB1) pseudogene and a chromosome 14 open
             reading frame 111 (C14orf111) pseudogene, complete
             sequence
          Length = 139273

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   tctttcttgtcatttcaacaa 421
             |||||||||||||||||||||
Sbjct: 82927 tctttcttgtcatttcaacaa 82907

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>emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on chromosome 1 Contains part
             of gene KIAA1365 and the PIN1L gene for protein
             (peptidyl-prolyl cis/trans isomerase) NIMA-interacting
             1-like, complete sequence
          Length = 153750

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 401   tctttcttgtcatttcaacaa 421
             |||||||||||||||||||||
Sbjct: 78096 tctttcttgtcatttcaacaa 78116

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>emb|AL358949.16| Human DNA sequence from clone RP11-302K6 on chromosome 10 Contains part
              of the gene for VPS10 domain receptor protein SORCS 3
              (SORCS3), complete sequence
          Length = 166563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 401    tctttcttgtcatttcaacaa 421
              |||||||||||||||||||||
Sbjct: 109875 tctttcttgtcatttcaacaa 109895

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>emb|AL136300.22| Human DNA sequence from clone RP11-10G5 on chromosome 13 Contains the
             gene for a novel protein similar to zinc finger protein
             183 (ZNF183), the 5' of the FARP1 gene for
             (chondrocyte-derived) FERM, RhoGEF (ARHGEF) and pleckstrin
             domain protein 1 and two CpG islands, complete sequence
          Length = 170916

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    agatcttaaatatatctgtta 105
             |||||||||||||||||||||
Sbjct: 26571 agatcttaaatatatctgtta 26591

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>emb|AL035530.11|HS111C20 Human DNA sequence from clone RP1-111C20 on chromosome 6q25.3-27
            Contains the gene for radial spoke protein 3 (RSP3), the
            TAGP gene for T-cell activation GTPase activating
            protein, a novel gene and a CpG island, complete sequence
          Length = 108460

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 77   atctgaaaagatcttaaatatatct 101
            ||||||||||||| |||||||||||
Sbjct: 1528 atctgaaaagatcctaaatatatct 1552

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>gb|AC084083.10| Homo sapiens chromosome 8, clone RP11-550A5, complete sequence
          Length = 209859

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    aaatatatctgttaacaataa 112
             |||||||||||||||||||||
Sbjct: 34550 aaatatatctgttaacaataa 34530

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>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete
             sequence
          Length = 170121

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   tctttcttgtcatttcaacaa 421
             |||||||||||||||||||||
Sbjct: 83990 tctttcttgtcatttcaacaa 83970

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>emb|AL954227.3|RP43002I19 Pan troglodytes chromosome 22 BAC RP43-002I19, complete sequence
          Length = 192219

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   tctttcttgtcatttcaacaa 421
             |||||||||||||||||||||
Sbjct: 80622 tctttcttgtcatttcaacaa 80602

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>emb|AL954140.7| Mouse DNA sequence from clone RP23-52I15 on chromosome 4, complete
             sequence
          Length = 98087

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   taaatccaaagacctggtgca 271
             |||||||||||||||||||||
Sbjct: 19092 taaatccaaagacctggtgca 19112

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>gb|AF179296.2| Homo sapiens chromosome 8 clone RP4-678C5 map 8q24.2, complete sequence
          Length = 123529

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    aaatatatctgttaacaataa 112
             |||||||||||||||||||||
Sbjct: 38320 aaatatatctgttaacaataa 38340

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>gb|AC104431.2| Homo sapiens chromosome 8 clone RP11-550A5 map 8q24.2, complete sequence
          Length = 209870

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     aaatatatctgttaacaataa 112
              |||||||||||||||||||||
Sbjct: 175311 aaatatatctgttaacaataa 175331

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>dbj|AB001693.1| Equus caballus Mn-SOD mRNA for manganese superoxide dismutase,
           complete cds
          Length = 954

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 tgcactcaagttcattggtggaggc 292
           |||||||||||||| ||||||||||
Sbjct: 327 tgcactcaagttcaatggtggaggc 351

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>gb|AF041002.1|HSPPLG4 Homo sapiens periplakin (PPL) gene, exon 3
          Length = 3306

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   ctggggtaagaagcagaagg 35
            ||||||||||||||||||||
Sbjct: 2414 ctggggtaagaagcagaagg 2395

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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 490    acatcgaattcttggaaaaa 509
              ||||||||||||||||||||
Sbjct: 213744 acatcgaattcttggaaaaa 213763

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>gb|AC004764.1| Homo sapiens chromosome 5, P1 clone 255g5 (LBNL H61), complete sequence
          Length = 68048

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 26980 ctttcttgtcatttcaacaa 26999

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>ref|XM_416946.1| PREDICTED: Gallus gallus similar to Guanine nucleotide exchange
            factor DBS (DBLs big sister) (MCF2 transforming
            sequence-like protein) (LOC418747), mRNA
          Length = 2801

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   tagctcaggaccaagaccat 78
            ||||||||||||||||||||
Sbjct: 2130 tagctcaggaccaagaccat 2111

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>ref|XM_848172.1| PREDICTED: Canis familiaris similar to alpha 3 type VI collagen
            isoform 1 precursor (LOC485659), mRNA
          Length = 5397

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   ccaagaccatctgaaaagat 88
            ||||||||||||||||||||
Sbjct: 3899 ccaagaccatctgaaaagat 3880

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>emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 in linkage group 5,
             complete sequence
          Length = 125812

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   aaaagatggtctttcttgtc 411
             ||||||||||||||||||||
Sbjct: 78151 aaaagatggtctttcttgtc 78170

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>ref|XM_568739.1| Cryptococcus neoformans var. neoformans JEC21 glucan 1,3
           beta-glucosidase protein (CNN00660) partial mRNA
          Length = 875

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 490 acatcgaattcttggaaaaa 509
           ||||||||||||||||||||
Sbjct: 440 acatcgaattcttggaaaaa 421

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>gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 102257

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  cacatttgagcatcaggtgc 174
            ||||||||||||||||||||
Sbjct: 5331 cacatttgagcatcaggtgc 5312

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>emb|Z35600.1|CEF37A8 Caenorhabditis elegans Cosmid F37A8, complete sequence
          Length = 35081

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   aatggaacatcttttatgtc 556
             ||||||||||||||||||||
Sbjct: 27130 aatggaacatcttttatgtc 27111

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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    ttcgaaaaagctctgttgaa 593
              ||||||||||||||||||||
Sbjct: 683350 ttcgaaaaagctctgttgaa 683369

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>emb|AL158208.14| Human DNA sequence from clone RP11-55P21 on chromosome 9, complete
            sequence
          Length = 8344

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  ctttcttgtcatttcaacaa 421
            ||||||||||||||||||||
Sbjct: 3103 ctttcttgtcatttcaacaa 3084

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>emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chromosome 6 Contains the
            SOX4 gene for SRY (sex determining region Y)-box 4, a
            novel pseudogene and CpG islands, complete sequence
          Length = 128728

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  aactgtctttgttagcaatg 375
            ||||||||||||||||||||
Sbjct: 6130 aactgtctttgttagcaatg 6111

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>emb|AL109800.25|HSDA64P14 Human DNA sequence from clone RP6-64P14 on chromosome Xq24-25, complete
             sequence
          Length = 163764

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 67284 ctttcttgtcatttcaacaa 67303

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>gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosome 13, complete
             sequence
          Length = 193801

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   aacaaaagatggtctttctt 408
             ||||||||||||||||||||
Sbjct: 83449 aacaaaagatggtctttctt 83430

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>gb|AC104148.5| Drosophila melanogaster X BAC RP98-34O3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181395

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aaatgcgacagttgcacatg 228
              ||||||||||||||||||||
Sbjct: 129219 aaatgcgacagttgcacatg 129238

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>gb|AC108517.3| Homo sapiens BAC clone RP11-622J8 from 4, complete sequence
          Length = 128233

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  ctttcttgtcatttcaacaa 421
            ||||||||||||||||||||
Sbjct: 4096 ctttcttgtcatttcaacaa 4115

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>gb|AC098575.6| Drosophila melanogaster X BAC RP98-3D13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 155685

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aaatgcgacagttgcacatg 228
              ||||||||||||||||||||
Sbjct: 148341 aaatgcgacagttgcacatg 148322

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>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 90864 ctttcttgtcatttcaacaa 90845

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>gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, complete sequence
          Length = 184547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 74476 ctttcttgtcatttcaacaa 74457

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>emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 in linkage group 8,
             complete sequence
          Length = 231254

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    taaatatatctgttaacaataata 114
             |||||||||||||||| |||||||
Sbjct: 61380 taaatatatctgttaataataata 61403

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>emb|CR406812.1| Gallus gallus finished cDNA, clone ChEST733k17
          Length = 931

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 59  tagctcaggaccaagaccat 78
           ||||||||||||||||||||
Sbjct: 267 tagctcaggaccaagaccat 248

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>gb|AC008784.7| Homo sapiens chromosome 5 clone CTD-2028D11, complete sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 82234 ctttcttgtcatttcaacaa 82215

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>emb|CR352762.1| Gallus gallus finished cDNA, clone ChEST103i7
          Length = 2802

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   tagctcaggaccaagaccat 78
            ||||||||||||||||||||
Sbjct: 2130 tagctcaggaccaagaccat 2111

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>gb|AC139019.3| Homo sapiens chromosome 8, clone CTD-3091F23, complete sequence
          Length = 134096

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   aaagaatctgcagagaaggc 526
             ||||||||||||||||||||
Sbjct: 63812 aaagaatctgcagagaaggc 63793

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>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence
          Length = 169166

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ctggggtaagaagcagaagg 35
             ||||||||||||||||||||
Sbjct: 96440 ctggggtaagaagcagaagg 96459

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>gb|AC073902.3| Homo sapiens BAC clone RP11-228F17 from 2, complete sequence
          Length = 60232

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  ctttcttgtcatttcaacaa 421
            ||||||||||||||||||||
Sbjct: 5092 ctttcttgtcatttcaacaa 5073

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>gb|AC008670.6| Homo sapiens chromosome 5 clone CTB-36O1, complete sequence
          Length = 126034

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 21745 ctttcttgtcatttcaacaa 21726

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>gb|AC106042.2| Homo sapiens BAC clone RP11-16O23 from 2, complete sequence
          Length = 42027

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 36595 ctttcttgtcatttcaacaa 36576

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>emb|BX088579.5| Zebrafish DNA sequence from clone CH211-198C19 in linkage group 16,
            complete sequence
          Length = 214474

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   ccaagaccatctgaaaagat 88
            ||||||||||||||||||||
Sbjct: 8109 ccaagaccatctgaaaagat 8090

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>emb|AL132718.5|CNS01DTG Human chromosome 14 DNA sequence BAC R-626P14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 183009

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    ctttcttgtcatttcaacaa 421
              ||||||||||||||||||||
Sbjct: 123339 ctttcttgtcatttcaacaa 123358

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>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
              sequence
          Length = 309053

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aaatgcgacagttgcacatg 228
              ||||||||||||||||||||
Sbjct: 281912 aaatgcgacagttgcacatg 281931

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>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete
              sequence
          Length = 225652

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     tagctcaggaccaagaccat 78
              ||||||||||||||||||||
Sbjct: 215147 tagctcaggaccaagaccat 215128

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>dbj|AP001804.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-164A10, complete
             sequence
          Length = 166302

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 43691 ctttcttgtcatttcaacaa 43672

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>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete
              sequence
          Length = 198816

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tagctcaggaccaagaccat 78
              ||||||||||||||||||||
Sbjct: 123253 tagctcaggaccaagaccat 123272

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>dbj|AP002965.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-299I2, complete
              sequence
          Length = 150481

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    ctttcttgtcatttcaacaa 421
              ||||||||||||||||||||
Sbjct: 130892 ctttcttgtcatttcaacaa 130873

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>emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, complete sequence
          Length = 38464

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   ttttatgtcacgcattttga 567
             ||||||||||||||||||||
Sbjct: 21706 ttttatgtcacgcattttga 21725

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>dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC clone:395N09,
             containing QDPR gene for dihydropteridine reductase,
             complete cds
          Length = 128800

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 89057 ctttcttgtcatttcaacaa 89076

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>gb|AC002556.1|AC002556 Human Chromosome 11q25 PAC clone pDJ9j14, complete sequence
          Length = 123189

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctttcttgtcatttcaacaa 421
             ||||||||||||||||||||
Sbjct: 36927 ctttcttgtcatttcaacaa 36908

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>dbj|AP005664.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1588E7, complete
             sequence
          Length = 156544

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 507   aaagaatctgcagagaaggc 526
             ||||||||||||||||||||
Sbjct: 95655 aaagaatctgcagagaaggc 95674

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>emb|Z83109.1|CEF44G3 Caenorhabditis elegans Cosmid F44G3, complete sequence
          Length = 37176

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    ttaaatatatctgttaacaa 109
             ||||||||||||||||||||
Sbjct: 15860 ttaaatatatctgttaacaa 15879

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>emb|AL031366.1|DMC100G7 Drosophila melanogaster cosmid clone 100G7
          Length = 40752

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aaatgcgacagttgcacatg 228
             ||||||||||||||||||||
Sbjct: 18249 aaatgcgacagttgcacatg 18268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,358,401
Number of Sequences: 3902068
Number of extensions: 6358401
Number of successful extensions: 123803
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123606
Number of HSP's gapped (non-prelim): 196
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result