ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags24m16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPN2_MOUSE (Q9DBB9) Carboxypeptidase N subunit 2 precursor (Carb... 31 2.1
2T7L1A_XENLA (P70062) Transcription factor 7-like 1-A (HMG box tr... 30 4.6
3MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p... 30 4.6
4OR8H1_HUMAN (Q8NGG4) Olfactory receptor 8H1 30 6.1
5MURA_NOCFA (Q5Z0X7) UDP-N-acetylglucosamine 1-carboxyvinyltransf... 29 7.9

>CPN2_MOUSE (Q9DBB9) Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N|
           polypeptide 2) (Carboxypeptidase N 83 kDa chain)
           (Carboxypeptidase N regulatory subunit)
           (Carboxypeptidase N large subunit)
          Length = 547

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 373 SWILTIDSCCPHIFCCCNHPEQSLLLPCRKNR 278
           SW LT++    H  C  ++PE ++LL C ++R
Sbjct: 467 SWDLTVEGRAAHSQCAYSNPEGTVLLACEESR 498



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>T7L1A_XENLA (P70062) Transcription factor 7-like 1-A (HMG box transcription|
           factor 3-A) (TCF-3-A) (xTcf-3)
          Length = 554

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 27/73 (36%), Positives = 37/73 (50%)
 Frame = -3

Query: 316 PEQSLLLPCRKNRVHSLCQMRPLLLISCIAALARTNLLANIAHLSASCPSSTNSVSISGH 137
           P  +L  P      HS  Q +PL L +   A A+ +L  + A L++  PSS+   S SGH
Sbjct: 449 PSAALASPAAPAATHSE-QAQPLSLTTKPEARAQLSLSHSAAFLASKSPSSS---SFSGH 504

Query: 136 HSGTLPCGSFLLT 98
            S   P GS LL+
Sbjct: 505 LSS--PVGSPLLS 515



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>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 352  SCCPHIFCCCNHPEQSLLLPCRK--NRVHSLCQ 260
            S CP   CC N+ E+ L+L CR+    +H++CQ
Sbjct: 1078 SSCP--VCCRNYREEDLILQCRQCDRWMHAVCQ 1108



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>OR8H1_HUMAN (Q8NGG4) Olfactory receptor 8H1|
          Length = 311

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
 Frame = -3

Query: 292 CRKNRV-HSLCQMRPLLLISC---------IAALARTNLLANIAHLSASCPSSTNSV--- 152
           C  N V H  C   P+L +SC         I  LA + L+ ++  +SAS  S  +++   
Sbjct: 168 CDSNVVRHFFCDTSPILALSCMDTYDIEIMIHILAGSTLMVSLITISASYVSILSTILKI 227

Query: 151 -SISGHHSGTLPCGSFLL 101
            S SG       C S LL
Sbjct: 228 NSTSGKQKALSTCASHLL 245



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>MURA_NOCFA (Q5Z0X7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 426

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 305 ALFWMIAAAEDMGTARINGENPRDFLAGLSTNIGLDKFRAA 427
           A  W IAAA  MG  R+ G NP+         + LDK R+A
Sbjct: 242 AATWGIAAAMTMGDVRVTGVNPKHLA------LVLDKLRSA 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,780,427
Number of Sequences: 219361
Number of extensions: 1423749
Number of successful extensions: 4907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4906
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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