ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25a19 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 71.6 bits (174), Expect = 2e-12 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 EEA VE ++ +D+NGR++ V + R P P T Y++YV N+ W A L Sbjct: 188 EEAEKAVEMYNRYDVNGRLLTVN-KAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARL 246 Query: 185 KEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWR 355 ++ FS+ VSA +V+D +S G+GFV+ ++ E A++ L+G+ L R + + Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Query: 356 EDK 364 ED+ Sbjct: 307 EDR 309 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVS-ANIVF--DDRKSAGYGFVSFGTKEEAEAALSE 307 KL+V NL + S L F Q V A +++ D +S G+GFV+ T EEAE A+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 308 LN 313 N Sbjct: 197 YN 198
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 69.7 bits (169), Expect = 7e-12 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 EEA VE + +D+NGR++ V + R P +P T Y++YV N+ W A L Sbjct: 149 EEADKAVELYSQYDLNGRLLTVNKAAP-RGSRPERAPRTFQPTYRIYVGNIPWDIDDARL 207 Query: 185 KEFFSQFNP-VSANIVFD--DRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWR 355 ++ FS+ VSA +VFD +S G+GFV+ ++ E A++ L+G+ L R + + Sbjct: 208 EQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 Query: 356 EDK 364 E++ Sbjct: 268 EER 270 Score = 38.1 bits (87), Expect = 0.021 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALS- 304 KL+V NL + S L + F Q V V +R +S G+GFV+ T EEA+ A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 305 ----ELNGKEL 325 +LNG+ L Sbjct: 158 YSQYDLNGRLL 168
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 67.8 bits (164), Expect = 3e-11 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 +EA VEKF+ +D+NGR++ V + R P +P +++YV NL W + L Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAP-RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260 Query: 185 KEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWR 355 ++ FS+ V A +V+D +S G+GFV+ +E A+S L+G+ L R + + Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 Query: 356 EDK 364 E++ Sbjct: 321 EER 323 Score = 40.4 bits (93), Expect = 0.004 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Frame = +2 Query: 35 DGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPV 214 +G + G V + S+ P P KL+V NLA+ S L F Q V Sbjct: 124 EGDESEGDVSEGAVSERAEFPEPSEEA-------KLFVGNLAYDVNSQALAMLFEQAGTV 176 Query: 215 SANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKELMER 334 V +R+ S G+GFV+ + +EAE A+ + N +L R Sbjct: 177 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 219
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 66.2 bits (160), Expect = 7e-11 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKY--------KLYVSNLA 160 EEA + FDG + GR +KV F + R I + Y KLYV+NL+ Sbjct: 166 EEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLS 225 Query: 161 WKARSADLKEFFS-QFNPVSANIVFD--DRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 W S L++ F+ Q +SA +++D +S G+GF++F + E +AL +N EL Sbjct: 226 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEG 285 Query: 332 RPVILRWREDKETVKADGEVE 394 RP+ L K V + VE Sbjct: 286 RPLRLNVAGQKAPVSSPPVVE 306
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 63.5 bits (153), Expect = 5e-10 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A VE+ +G +I+G++I KVE ++ + I ++Y+ LY+ N Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI-SRYQGVNLYIKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ +D +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE KA Sbjct: 361 KPLYVALAQRKEERKA 376 Score = 54.3 bits (129), Expect = 3e-07 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 2/128 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N R + V KS RK +Y+ N + L Sbjct: 149 EAADKAIEKMNGMLLNDRKVFVGRFKS-RKEREAELGAKAKEFTNVYIKNFGEEVDDESL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE FSQF +S ++ D KS G+GFVS+ E+A A+ E+NGKE+ + + + + Sbjct: 208 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267 Query: 359 DKETVKAD 382 K +A+ Sbjct: 268 KKVERQAE 275 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GY FV F T+E A+ A+ ++NG Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSRKE 178 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LYV +L A L E FS PV + V D R+S GY +V+F +AE AL + Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + +P+ + W + +++ G Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSG 97
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 62.4 bits (150), Expect = 1e-09 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 11/118 (9%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKP------APPSSPDT--IVAKYKLYVSNLA 160 E+A AV+EK + +I GR IKV ++ KP A + D+ + + YK+Y+ NLA Sbjct: 136 EDANAVIEKLNDTEIGGRKIKVNITE---KPLEGMDIATTQAEDSQFVESPYKVYIGNLA 192 Query: 161 WKARSADLKEFFSQFNPVSANIVF---DDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 + LK+FFS+ V V KS G+GFVSF ++EE EAA+ LN L Sbjct: 193 KTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVL 250
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 60.8 bits (146), Expect = 3e-09 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDT-----IVAKYKLYVSNLAWKA 169 EEA VE +G+D++GR + V K AP SP+ ++YV NL W Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVN------KAAPRGSPERAPRGDFEPSCRVYVGNLPWDV 160 Query: 170 RSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 ++ L++ FS+ V + V DR +S G+GFV+ ++ E A++ L+G+ L R V Sbjct: 161 DTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAV 220 Query: 341 ILRWREDK 364 + E++ Sbjct: 221 RVNVAEER 228 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V NL + S L F V V +R +S G+GFV+ T EEAE A+ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 308 LNGKEL 325 LNG ++ Sbjct: 116 LNGYDM 121
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 59.7 bits (143), Expect = 7e-09 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G ++NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRIT-RYQVVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++K +G +NGR + V KS RK +Y+ N L Sbjct: 149 EAAERAIKKMNGMLLNGRKVFVGQFKS-RKEREAELGARAKEFPNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 K+ F +F P +S ++ D+ KS G+GFVSF E+A+ A+ E+NGKEL Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++V NL + L + S F N +S N+V D+ S GYGFV F T E AE A+ ++NG Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160 Query: 317 KELMERPVIL 346 L R V + Sbjct: 161 MLLNGRKVFV 170 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAG---YGFV 265 P+ PS P LYV +L A L E FS P+ + + D ++G Y +V Sbjct: 3 PSTPSYPTA-----SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYV 57 Query: 266 SFGTKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +F ++AE AL +N + +PV + W + +++ G Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 59.7 bits (143), Expect = 7e-09 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V+ +G D+NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ F+ F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 52.8 bits (125), Expect = 8e-07 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++K +G +N R + V KS RK +Y+ N L Sbjct: 149 EAAERAIDKMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 KE+F Q+ +S ++ DD KS G+GFVSF E+A+ A+ ++NGK+L + + + Sbjct: 208 KEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GYGFV F T+E AE A+ ++NG Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSRKE 178 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + +PV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.3 bits (142), Expect = 9e-09 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G ++NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N R + V KS RK +Y+ N L Sbjct: 149 EAAERAIEKMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 KE F +F P +S ++ D+ KS G+GFVSF E+A+ A+ E+NGKEL Sbjct: 208 KELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GYGFV F T+E AE A+ ++NG Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSRKE 178 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + +PV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.3 bits (142), Expect = 9e-09 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G ++NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N R + V KS +K +Y+ N L Sbjct: 149 EAAERAIEKMNGMLLNDRKVFVGRFKS-QKEREAELGARAKEFTNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 KE F +F P +S ++ D+ KS G+GFVSF E+A+ A+ E+NGKEL Sbjct: 208 KELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GYGFV F T+E AE A+ ++NG Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSQKE 178 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + +PV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.3 bits (142), Expect = 9e-09 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G ++NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 55.1 bits (131), Expect = 2e-07 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N R + V KS RK +Y+ N L Sbjct: 149 EAAERAIEKMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 K+ F +F P +S ++ D+ KS G+GFVSF E+A+ A+ E+NGKEL Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GYGFV F T+E AE A+ ++NG Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSRKE 178 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + +PV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 59.3 bits (142), Expect = 9e-09 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G ++NG+ I KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 55.1 bits (131), Expect = 2e-07 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N R + V KS RK +Y+ N L Sbjct: 149 EAAERAIEKMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 K+ F +F P +S ++ D+ KS G+GFVSF E+A+ A+ E+NGKEL Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +++ NL + L + FS F N +S +V D+ S GYGFV F T+E AE A+ ++NG Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 317 KELMERPVIL-RWREDKE 367 L +R V + R++ KE Sbjct: 161 MLLNDRKVFVGRFKSRKE 178 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + +PV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 58.2 bits (139), Expect = 2e-08 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 33/153 (21%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDT--------------------- 121 EE A ++F+G++I+GR I+V PAP ++ Sbjct: 139 EEVEAAEQQFNGYEIDGRAIRVNAG-----PAPAKRENSSFGGGRGGNSSYGGGRDGNSS 193 Query: 122 ---------IVAKYKLYVSNLAWKARSADLKEFFS-QFNPVSANIVFD--DRKSAGYGFV 265 + + ++YV NL+W LKE FS Q N V A +V+D +S G+GFV Sbjct: 194 FGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFV 253 Query: 266 SFGTKEEAEAALSELNGKELMERPVILRWREDK 364 ++ + +E A+ LNG +L R + + E++ Sbjct: 254 TYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V NL + SA L F + V V D+ +S G+GFV+ TKEE EAA + Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 308 LNGKELMERPV 340 NG E+ R + Sbjct: 148 FNGYEIDGRAI 158
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 57.4 bits (137), Expect = 3e-08 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 9/133 (6%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK----YKLYVSNLAWKAR 172 E+A +++ GH ++G ++V S+ KPA S+ V K K+ V N+ ++A Sbjct: 777 EQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQAN 836 Query: 173 SADLKEFFSQFNPVSA----NIVFDDRKSAGYGFVSFGTKEEAEAALSEL-NGKELMERP 337 +++E FS F + + G+GFV F TK++A+ A + L + L R Sbjct: 837 QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 896 Query: 338 VILRWREDKETVK 376 ++L W + + TV+ Sbjct: 897 LVLEWADSEVTVQ 909 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFD-DRKSAGYGFVSFGTKEEAEAALSEL 310 +L V NL + ++ F+ F ++ ++ F D K +GF+ F ++EEA+AAL+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHF 62 Query: 311 N 313 + Sbjct: 63 H 63
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 57.4 bits (137), Expect = 3e-08 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 33/153 (21%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDT--------------------- 121 EE A ++F+G++I+GR I+V PAP ++ Sbjct: 140 EEVEAAEQQFNGYEIDGRAIRVNAG-----PAPAKRENSSFGGGRGGNSSYGGGRDGNSS 194 Query: 122 ---------IVAKYKLYVSNLAWKARSADLKEFFS-QFNPVSANIVFD--DRKSAGYGFV 265 + + ++YV NL+W LKE FS Q N V A +V+D +S G+GFV Sbjct: 195 FGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFV 254 Query: 266 SFGTKEEAEAALSELNGKELMERPVILRWREDK 364 ++ + +E A+ LNG +L R + + E++ Sbjct: 255 TYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V NL + SA L F + V V D+ +S G+GFV+ TKEE EAA + Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 308 LNGKELMERPV 340 NG E+ R + Sbjct: 149 FNGYEIDGRAI 159
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 17/139 (12%) Frame = +2 Query: 2 AEEAAAVVEKFDGHDIN------GRV---------IKVEFSKSFRKPAPPSSPDTIVAKY 136 A++AA VE +GH + GR ++V + ++ ++ A Sbjct: 265 ADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN----- 319 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSEL 310 LYV NL LKE FS F V+++ V D S G GFV+F T EEA A+S+L Sbjct: 320 -LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 378 Query: 311 NGKELMERPVILRWREDKE 367 +GK + +P+ + + KE Sbjct: 379 SGKMIESKPLYVAIAQRKE 397 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A +EK +G +N + + V F + S +YV NLA DL Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVG---PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDL 231 Query: 185 KEFFSQFNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 K F ++ +++ +V D KS G+GFV+F ++A A+ LNG + ++ W Sbjct: 232 KNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK----EWYV 287 Query: 359 DKETVKADGEVE 394 + K++ E E Sbjct: 288 GRAQKKSERETE 299 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++AA +++ + + G+ I+V +S R P+ S +++ NL L Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSH--RDPSVRRS-----GAGNIFIKNLDESIDHKAL 140 Query: 185 KEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 + FS F N VS + D +S GYGFV + +E A+ A+ +LNG L ++ V Sbjct: 141 HDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%) Frame = +2 Query: 98 APPSSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYG 259 AP +S ++ LYV +L + + L + F Q V V D R+S GYG Sbjct: 21 APATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYG 80 Query: 260 FVSFGTKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +V+F ++A A+ ELN L +P+ + + +V+ G Sbjct: 81 YVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSG 122
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 57.4 bits (137), Expect = 3e-08 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++ +G +N R + V KS R+ ++ +Y+ N L Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKS-RRERELEYGAKVMEFTNVYIKNFGEDMDDKRL 207 Query: 185 KEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +E FS F N +S ++ DD +S G+GFV++G EEA+ A+SE+NGKE+ R + Sbjct: 208 REIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261 Score = 55.8 bits (133), Expect = 1e-07 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 EEA V + +G ++NGR+I ++E ++ + I +Y+ LYV N Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERI-NRYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS + + SA ++ + S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE KA Sbjct: 361 KPLYVALAQRKEERKA 376 Score = 47.0 bits (110), Expect = 5e-05 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +A ++ + I GR I++ +S+ R P S +++ NL + L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQ--RDPGLRKS-----GVGNVFIKNLDESIDNKALY 116 Query: 188 EFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 + FS F N +S +V D+ S GYGFV F T+E A A+ +NG L +R V + Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LYV +L A L E FS P+ + V D R+S GY +++F +AE AL + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + + RP+ + W + ++ G Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 57.4 bits (137), Expect = 3e-08 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++ +G +N R + V KS R+ ++ +Y+ N L Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKS-RRERELEYGAKVMEFTNVYIKNFGEDMDDKRL 207 Query: 185 KEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +E FS F N +S ++ DD +S G+GFV++G EEA+ A+SE+NGKE+ R + Sbjct: 208 REIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261 Score = 54.3 bits (129), Expect = 3e-07 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 EEA V + +G ++NGR+I ++E ++ + I +Y+ LYV N Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERI-NRYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ F + + SA ++ + S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE KA Sbjct: 361 KPLYVALAQRKEERKA 376 Score = 46.2 bits (108), Expect = 8e-05 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +A ++ + I GR I++ +S+ R P S +++ NL + L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQ--RDPGLRKS-----GVGNVFIKNLDESIDNKALY 116 Query: 188 EFFSQF-NPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 + FS F N +S +V D+ S GYGFV F T E A A+ +NG L +R V + Sbjct: 117 DTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LY+ +L A L E FS P+ + V D R+S Y +++F +AE AL + Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + + RP+ + W + ++ G Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 57.0 bits (136), Expect = 4e-08 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 19/132 (14%) Frame = +2 Query: 80 KSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--------- 232 K+ KP PP+S +YVS L+ + LKE F +NP A I Sbjct: 196 KNKAKPLPPNS---------IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIR 246 Query: 233 ------DDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILR---WREDKETVKAD- 382 + R+ G+GFVSF E+ A+ E+NGK++ + ++++ +REDK+ + + Sbjct: 247 RIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEK 306 Query: 383 GEVEGVKVDDQA 418 E E ++ + A Sbjct: 307 NENEPIEASESA 318
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 57.0 bits (136), Expect = 4e-08 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 E+A V++ +G D+NG+ + KVE ++ D I +Y+ LYV N Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRIT-RYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ F F + SA ++ + +S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 361 KPLYVALAQRKEERQA 376 Score = 54.3 bits (129), Expect = 3e-07 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++K +G +N R + V KS RK +Y+ N L Sbjct: 149 EAAERAIDKMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERL 207 Query: 185 KEFFSQFNP-VSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKEL 325 KE F ++ P +S ++ DD KS G+GFVSF E+A+ A+ E+NGK++ Sbjct: 208 KEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%) Frame = +2 Query: 47 INGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQF-NPVSAN 223 I GR +++ +S+ R P+ S +++ NL + L + FS F N +S Sbjct: 77 IKGRPVRIMWSQ--RDPSLRKS-----GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129 Query: 224 IVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL-RWREDKE 367 +V D+ S GYGFV F T+E AE A+ ++NG L +R V + R++ KE Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKE 178 Score = 46.2 bits (108), Expect = 8e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFG 274 PS+P +A LYV +L A L E FS P+ + V D R+S GY +V+F Sbjct: 3 PSAPSYPMAS--LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60 Query: 275 TKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 +AE AL +N + RPV + W + +++ G Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSG 97
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 57.0 bits (136), Expect = 4e-08 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Frame = +2 Query: 11 AAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK------YKLYVSNLAWKAR 172 AAA + +G I G+ +KV ++ + +S T+V+ + ++V +L+ + Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118 Query: 173 SADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPVI 343 + D+K F+ F +S V D KS GYGFVSF K +AE A+ ++ G+ L R + Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178 Query: 344 LRWREDK 364 W K Sbjct: 179 TNWATRK 185 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 LYV NL+ A + + FSQ P + ++ D + Y FV F A AAL+ +NG Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68 Query: 317 KELMERPVILRWREDKETVKAD 382 +++M + V + W + K D Sbjct: 69 RKIMGKEVKVNWATTPSSQKKD 90 Score = 36.6 bits (83), Expect = 0.062 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSP----------DTIVAKYK-----L 142 +A +++ G + GR I+ ++ RKP P S D +V++ + Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWAT--RKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTV 216 Query: 143 YVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKE 322 Y + +++ FS F + VF D+ GY FV F + E A A+ +NG Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK---GYSFVRFSSHESAAHAIVSVNGTT 273 Query: 323 LMERPVILRWREDKETV 373 + V W KET+ Sbjct: 274 IEGHVVKCYW--GKETL 288
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 57.0 bits (136), Expect = 4e-08 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Frame = +2 Query: 11 AAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK------YKLYVSNLAWKAR 172 AAA + +G I G+ +KV ++ + +S T+V+ + ++V +L+ + Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQIT 118 Query: 173 SADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPVI 343 + D+K F+ F +S V D KS GYGFVSF K +AE A+ ++ G+ L R + Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178 Query: 344 LRWREDK 364 W K Sbjct: 179 TNWATRK 185 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 LYV NL+ A + + FSQ P + ++ D + Y FV F A AAL+ +NG Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68 Query: 317 KELMERPVILRWREDKETVKAD 382 +++M + V + W + K D Sbjct: 69 RKIMGKEVKVNWATTPSSQKKD 90 Score = 35.8 bits (81), Expect = 0.11 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSP----------DTIV-----AKYKL 142 +A +++ G + GR I+ ++ RKP P S D +V + + Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWAT--RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTV 216 Query: 143 YVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKE 322 Y + +++ FS F + VF D+ GY FV F + E A A+ +NG Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK---GYSFVRFNSHESAAHAIVSVNGTT 273 Query: 323 LMERPVILRWREDKETV 373 + V W KET+ Sbjct: 274 IEGHVVKCYW--GKETL 288
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 56.6 bits (135), Expect = 6e-08 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW A+L+ FSQF V + + +DR +S G+GFV+F ++ + A+ Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 302 SELNGKELMERPV 340 E+NGKEL R + Sbjct: 65 DEMNGKELDGRTI 77
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 56.2 bits (134), Expect = 8e-08 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 9/121 (7%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPS------SPDTIVAKYKLYVSNLAWK 166 EE A ++F+G++++GR ++V K S + + ++YV NLAW Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWG 198 Query: 167 ARSADLKEFFS-QFNPVSANIVF--DDRKSAGYGFVSFGTKEEAEAALSELNGKELMERP 337 L+ FS Q V A +V+ D +S G+GFV++ + EE A+ L+G +L R Sbjct: 199 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 258 Query: 338 V 340 + Sbjct: 259 I 259 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 K++V NL + A SA L E F + V V D+ +S G+GFV+ +KEE EAA + Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 308 LNGKEL 325 NG EL Sbjct: 148 FNGYEL 153
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 15/127 (11%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEF--------SKSFRKPAP----PSSPDTIVAKYKLYV 148 EE A ++F+G++++GR ++V + SFR+ + + + ++YV Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYV 198 Query: 149 SNLAWKARSADLKEFFS-QFNPVSANIVF--DDRKSAGYGFVSFGTKEEAEAALSELNGK 319 NLAW L+ FS Q V A +V+ D +S G+GFV++ + EE A+ L+G Sbjct: 199 GNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGV 258 Query: 320 ELMERPV 340 +L R + Sbjct: 259 DLNGRAI 265 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 K++V NL + A SA L E F + V V D+ +S G+GFV+ +KEE EAA + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 308 LNGKEL 325 NG EL Sbjct: 148 FNGYEL 153
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW DL+ FSQF V + + +DR +S G+GFV+F ++ A+ Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 302 SELNGKELMERPV 340 E+NGKEL R + Sbjct: 65 EEMNGKELDGRVI 77
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E A ++ +G +N R + V KS R+ ++ +Y+ N L Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKS-RRERELEYGAKVMEFTNVYIKNFGEDMDDKRL 207 Query: 185 KEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 KE FS F N +S ++ D+ +S G+GFV++G EEA+ A++E+NGKE+ R V Sbjct: 208 KEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261 Score = 53.5 bits (127), Expect = 5e-07 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKYK---LYVSN 154 EEA V + +G ++NGR++ ++E ++ + I +Y+ LYV N Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERI-NRYQGVNLYVKN 300 Query: 155 LAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L L++ FS + + S ++ + S G+GFV F + EEA A++E+NG+ + Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE KA Sbjct: 361 KPLYVALAQRKEERKA 376 Score = 45.1 bits (105), Expect = 2e-04 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +A ++ + I GR I++ +S+ R P S +++ NL + L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQ--RDPGLRKS-----GVGNVFIKNLDDSIDNKALY 116 Query: 188 EFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 + FS F + S +V D+ S GYGFV F T+E A A+ +NG L +R V + Sbjct: 117 DTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LY+ +L A L E FS P+ + V D R+S GY +++F +AE AL + Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + + RP+ + W + ++ G Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSG 97
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSF 271 P+ S PD +L+VSN+ ++ R DLK F +F VS I+F++R S G+GFV+ Sbjct: 143 PSTSSGPD---GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTM 199 Query: 272 GTKEEAEAALSELNGKELMERPV 340 ++AE A EL+G + R + Sbjct: 200 ERPQDAERARQELHGSMIEGRKI 222
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK----YKLYVSNLAWKAR 172 E+A +++ GH ++G ++V S+ KPA + V + K+ V N+ ++A Sbjct: 785 EQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAH 844 Query: 173 SADLKEFFSQFNPVSA----NIVFDDRKSAGYGFVSFGTKEEAEAALSEL-NGKELMERP 337 S +++E FS F + + G+GFV F TK++A+ A + L + L R Sbjct: 845 SREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRR 904 Query: 338 VILRWREDKETVKA 379 ++L W + + T++A Sbjct: 905 LVLEWADSEVTLQA 918
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +AAA + +G I G+ +KV ++ + P S + ++V +L+ + + D+K Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATT-----PSSQKKDTSNHFHVFVGDLSPEITTEDIK 131 Query: 188 EFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 F+ F +S V D KS GYGFVSF K +AE A+ + G+ L R + W Sbjct: 132 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 191 Query: 359 DK 364 K Sbjct: 192 RK 193 Score = 36.6 bits (83), Expect = 0.062 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYK--------------LY 145 +A + G + GR I+ ++ + PAP S+ +T + + +Y Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225 Query: 146 VSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +A +++ FS F + VF ++ GY FV F T E A A+ +NG + Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK---GYSFVRFSTHESAAHAIVSVNGTTI 282 Query: 326 MERPVILRWRED 361 V W ++ Sbjct: 283 EGHVVKCYWGKE 294 Score = 35.4 bits (80), Expect = 0.14 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP---------------VSANI---VFDDRKSAGYGFV 265 LYV NL+ + + FSQ P V++++ V + Y FV Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70 Query: 266 SFGTKEEAEAALSELNGKELMERPVILRWREDKETVKAD 382 F +A AAL+ +NG++++ + V + W + K D Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSF-RKPAPPSSPDTIVAKYKLYVSNLAWKARSAD 181 E A ++K +G +NG+ KV K RK + +YV N Sbjct: 141 EAANTSIDKVNGMLLNGK--KVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEK 198 Query: 182 LKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 LKEFF + +++ V +D KS G+GFV+F T E AEAA+ LNGK++ E Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGE 250 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 LYV NL L+ FS + N SA ++ D+ +S G+GFV F EA A++ELN Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348 Query: 314 GKELMERPVILRWREDKETVKA 379 G+ + +P+ + + KE KA Sbjct: 349 GRVVGSKPLYVALAQRKEERKA 370 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LYV +L + L + FS PV + V D R+S GY +V+F +AE AL + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + +P+ + W + +++ G Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSG 88 Score = 37.7 bits (86), Expect = 0.028 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 +++ NL + + + FS F N +S + D++ S GYGFV F T+E A ++ ++N Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151 Query: 314 GKELMERPVIL-RWREDKETVKADGE 388 G L + V + ++ KE K GE Sbjct: 152 GMLLNGKKVYVGKFIPRKEREKELGE 177
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +AAA + +G I G+ +KV ++ + P S + ++V +L+ + + D+K Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATT-----PSSQKKDTSNHFHVFVGDLSPEITTEDIK 114 Query: 188 EFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 F+ F +S V D KS GYGFVSF K +AE A+ + G+ L R + W Sbjct: 115 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174 Query: 359 DK 364 K Sbjct: 175 RK 176 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 LYV NL+ + + FSQ P S ++ + + Y FV F +A AAL+ +NG Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70 Query: 317 KELMERPVILRWREDKETVKAD 382 ++++ + V + W + K D Sbjct: 71 RKILGKEVKVNWATTPSSQKKD 92 Score = 34.7 bits (78), Expect = 0.24 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 14/132 (10%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYK--------------LY 145 +A + G + GR I+ ++ + PAP S+ + + + +Y Sbjct: 150 DAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVY 208 Query: 146 VSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +A +++ FS F + VF ++ GY FV F T E A A+ +NG + Sbjct: 209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK---GYSFVRFSTHESAAHAIVSVNGTTI 265 Query: 326 MERPVILRWRED 361 V W ++ Sbjct: 266 EGHVVKCYWGKE 277
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 53.9 bits (128), Expect = 4e-07 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW L++ FSQF ++ + + +DR +S G+GFV+F ++ A+ Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 302 SELNGKELMERPVILRWREDKETVKADGEVEG 397 +NG+EL R + + + + + G EG Sbjct: 65 EGMNGQELDGRNITVNEAQSRGSGGGGGRREG 96
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 53.9 bits (128), Expect = 4e-07 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVI-------KVEFSKSFRKPAPPSSPDTIVAKY--KLYVSNL 157 E AA+ VEK +G + V+ K E + R+ + LY+ NL Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339 Query: 158 AWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELME 331 LKE FS++ V+++ V + + S G+GFV++ EEA ALSE+NGK + Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399 Query: 332 RPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 400 KPLYIALAQRKEDRRA 415 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKY-KLYVSNLAWKARSAD 181 E A A ++K +G +N + + V R+ +T ++ +YV NL + + Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFV--GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDE 244 Query: 182 LKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKEL 325 L++ F +F +S+ +V D+ S +GFV+F E A +A+ ++NG L Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294 Score = 43.1 bits (100), Expect = 7e-04 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Frame = +2 Query: 74 FSKSFRKPAPPSSPDT-IVAKYKLYVSNLAWKARSADLKEFFSQFNPV-SANIVFD-DRK 244 F + R P T + K +++ NL + L E FS F + S + D + Sbjct: 115 FDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR 174 Query: 245 SAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 S GYGFV F +E A+AA+ +LNG + ++ V + Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = +2 Query: 68 VEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQF-NPVSANIVFD-DR 241 V+ S P+P D LY +L K A L + F N VS + D +R Sbjct: 27 VQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR 86 Query: 242 KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +S GY +++F +A A+ LN L +RP+ Sbjct: 87 RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPI 119
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 53.1 bits (126), Expect = 6e-07 Identities = 48/148 (32%), Positives = 64/148 (43%), Gaps = 20/148 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-------EFSKSFRKPAPPSSPDTIVAKY-----KLYV 148 + A + F+G IN V K E K+ P P AK +L + Sbjct: 58 QRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLII 117 Query: 149 SNLAWKARSADLKEFFSQFNPV-SANIVFD-DRKSAGYGFVSFGTKEEAEAALSELNGKE 322 NL++K DLK F+QF V NI D K G+GFV F EA AL +N KE Sbjct: 118 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 177 Query: 323 LMERPVILRWR------EDKETVKADGE 388 + R V + W +D ++V A GE Sbjct: 178 IKGRTVAVDWAVAKDKYKDTQSVSAIGE 205 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKS---AGYGFVSFGTKEEAEAALSEL 310 L+V L ARS L+E FSQ PV V ++ S G+G+V+F E+ + AL E+ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 311 NGKELMERPVILRWREDKETVKADGEVE 394 E + V + ++ + K G+ E Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNE 92
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 52.8 bits (125), Expect = 8e-07 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Frame = +2 Query: 53 GRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF 232 G +++ S + P + KL++ L+W A L++ F+ F V V Sbjct: 8 GGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67 Query: 233 DDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDK 364 DR +S G+GFV+F + A AA+SE++GKEL R + + D+ Sbjct: 68 VDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 +L+VSN+ ++ R DL++ F QF + I+F++R S G+GFV+F +A+ A +L+ Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181 Query: 314 GKELMERPV 340 G + R + Sbjct: 182 GTVVEGRKI 190
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 51.6 bits (122), Expect = 2e-06 Identities = 31/125 (24%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Frame = +2 Query: 2 AEEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSAD 181 + +A ++ +G I ++K+ ++ ++ SS DT + L+V +L Sbjct: 124 SHDANIALQTLNGKQIENNIVKINWAFQSQQS---SSDDT----FNLFVGDLNVNVDDET 176 Query: 182 LKEFFSQF-NPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRW 352 L+ F F + +S ++++D + S GYGFVSF ++++A+ A+ + G++L RP+ + W Sbjct: 177 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 236 Query: 353 REDKE 367 ++ Sbjct: 237 AAKRD 241 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 LYV NL LK++F P++ + D+ K+ Y FV + +A AL LN Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 135 Query: 314 GKELMERPVILRWREDKETVKADGEVE------GVKVDDQ 415 GK++ V + W + +D V VDD+ Sbjct: 136 GKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDE 175
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 +L+VSN+ ++ R DL++ F QF + I+F++R S G+GFV+F +A+ A +L+ Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177 Query: 314 GKELMERPV 340 G + R + Sbjct: 178 GTVVEGRKI 186
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 +L+VSN+ ++ R DL++ F QF + I+F++R S G+GFV+F +A+ A +L+ Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176 Query: 314 GKELMERPV 340 G + R + Sbjct: 177 GTVVEGRKI 185
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++ ++ +G+ +N IKVE +KS R P P++ K++V NL K R+ ++ Sbjct: 51 QQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTT--------KIFVGNLTDKTRAPEV 102 Query: 185 KEFFSQFNPV-SANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +E F ++ V +IV YGFV + + A+ ELNG+ + +P+ Sbjct: 103 RELFQKYGTVVECDIV------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPL 149 Score = 36.2 bits (82), Expect = 0.081 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 +KL++ NL K ++ +L+ F ++ V V + YGFV T+++ A+ LN Sbjct: 7 FKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN-----YGFVHMETEQQGRDAIQNLN 61 Query: 314 GKELME 331 G L E Sbjct: 62 GYTLNE 67
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW + L++ F+ F V + V DR +S G+GFV+F +++ A+ Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66 Query: 302 SELNGKELMERPVILRWREDK 364 +NGKEL R + + + + Sbjct: 67 ENMNGKELDGRNITVNQAQSR 87
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 50.1 bits (118), Expect = 5e-06 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 5/83 (6%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALS 304 ++KL+V +L +A +++E F QF V + D R+S G GFV + +KE A AA+ Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAID 269 Query: 305 ELNGKELM---ERPVILRWREDK 364 LNG M +P+I+R+ E K Sbjct: 270 GLNGTYTMRGCNQPLIVRFAEPK 292
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 50.1 bits (118), Expect = 5e-06 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 26/137 (18%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIV-------------------- 127 E A ++F+G++++GR ++V P PP D Sbjct: 144 EVEAAAQQFNGYELDGRPLRVNAG-----PPPPKREDGFSRGPRSSFGSSGSGYGGGGGS 198 Query: 128 ---AKYKLYVSNLAWKARSADLKEFFS-QFNPVSANIVF--DDRKSAGYGFVSFGTKEEA 289 + ++YV NL+W L+ FS Q V A +++ D +S G+GFV++ + +E Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258 Query: 290 EAALSELNGKELMERPV 340 + A+ L+G +L R + Sbjct: 259 QNAIKSLDGADLDGRQI 275 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Frame = +2 Query: 86 FRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGY 256 F APP + A KL+V NL + SA L + F V V D+ +S G+ Sbjct: 76 FADVAPPKE-QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134 Query: 257 GFVSFGTKEEAEAALSELNGKELMERPV 340 GFV+ + E EAA + NG EL RP+ Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPL 162
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%) Frame = +2 Query: 95 PAPPSSPDTI-----VAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAG 253 P P ++P + V +++V + +K +DL++FFSQ+ V + +DR S G Sbjct: 15 PVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 254 YGFVSFGTKEEAEAALSE 307 YGFV+F T+E+A+ L E Sbjct: 75 YGFVTFETQEDAQKILQE 92
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%) Frame = +2 Query: 95 PAPPSSPDTI-----VAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAG 253 P P ++P + V +++V + +K +DL++FFSQ+ V + +DR S G Sbjct: 15 PVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 254 YGFVSFGTKEEAEAALSE 307 YGFV+F T+E+A+ L E Sbjct: 75 YGFVTFETQEDAQKILQE 92
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 49.7 bits (117), Expect = 7e-06 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFRKPAPPSSPDTIVAKYKLYVS 151 E AA VEK +G + V+ V E + F + S + LY+ Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER--ISRFEKLQGSNLYLK 333 Query: 152 NLAWKARSADLKEFFSQF-NPVSANIVFDDRK-SAGYGFVSFGTKEEAEAALSELNGKEL 325 NL LKE FS++ N S ++ + + S G+GFV++ EEA A+ E+NGK + Sbjct: 334 NLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 393 Query: 326 MERPVILRWREDKETVKA 379 +P+ + + KE +A Sbjct: 394 GRKPLYVALAQRKEERQA 411 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-EFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSAD 181 E A A ++K +G +N + + V F + R+ S + + +YV NL + + Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFVGHFVR--RQDRARSESGAVPSFTNVYVKNLPKEITDDE 240 Query: 182 LKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELME 331 LK+ F ++ +S+ +V D+ S +GFV+F + E A A+ ++NG L E Sbjct: 241 LKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGE 292 Score = 46.2 bits (108), Expect = 8e-05 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A+ +E + I R I++ S R P+ S K +++ NL + L Sbjct: 96 EDASRAMESLNYAPIRDRPIRIMLSN--RDPSTRLS-----GKGNVFIKNLDASIDNKAL 148 Query: 185 KEFFSQFNPV-SANIVFDD-RKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 E FS F + S + D +S GYGFV F +E A+AA+ +LNG L ++ V + Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELN 313 LYV +L + L + F+Q PV V D +S GY +V+F E+A A+ LN Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106 Query: 314 GKELMERP--VILRWREDKETVKADGEV 391 + +RP ++L R+ + G V Sbjct: 107 YAPIRDRPIRIMLSNRDPSTRLSGKGNV 134
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 L++ NL + LK FS F + SA I+ D++ KS G+GFV + T EEA A++E+N Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 314 GKELMERPVILRWREDKETVKADGEVE 394 + L +P+ + + KE ++ E + Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQ 452 Score = 46.6 bits (109), Expect = 6e-05 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVS 268 A PS T LYV L A L E F+ PV++ V D R+S GY +V+ Sbjct: 70 ATPSG--TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127 Query: 269 FGTKEEAEAALSELNGKELMERPVILRWREDKETVKADG 385 F E+ E AL ELN + RP + W + +++ G Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMG 166 Score = 46.2 bits (108), Expect = 8e-05 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKY-KLYVSNLAWKARSAD 181 E A A +E +G +N + + V S R+ S + + A + +Y+ NL + + Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ--SKVEALKANFTNVYIKNLDTEITEQE 276 Query: 182 LKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKE 322 + F QF +++ + D+ K G+GFV++ E A+ A+ ELN KE Sbjct: 277 FSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKE 325 Score = 37.7 bits (86), Expect = 0.028 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSA-GYGFVSFGTKEEAEAALSELN 313 +++ NL + L + FS F + S + D+ +A GYGFV F + E A AA+ +N Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229 Query: 314 GKELMERPVIL------RWREDK-ETVKAD 382 G L ++ V + R R+ K E +KA+ Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKAN 259
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L + L++ FS F P+S +V DR +S G+GF++F E A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 308 LNGKELMERPV 340 +NG+ L R + Sbjct: 67 MNGESLDGRQI 77
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGT 277 +SPD +Y+ +V LAW L+ FSQF + + + +DR +S G+GFV+F Sbjct: 2 ASPDV---EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKD 58 Query: 278 KEEAEAALSELNGKELMERPV 340 ++ + A+ +NG++L R + Sbjct: 59 EKSMKDAIEGMNGQDLDGRSI 79
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A +EK + +NG++I+V +S AP + + + ++V NL +A L Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWSVR----APDARRNGVG---NVFVKNLPESVTNAVL 128 Query: 185 KEFFSQF-NPVSANIV-FDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 ++ F +F N VS + +D KS GYGFV F ++ A AA+ LN + ++ + Sbjct: 129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 +YV N+ +L++ FSQ + S ++ D++ KS G+GFV F T EEA A+ + Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365 Query: 314 GKELMERPVILRWREDKETVKADGEVE 394 G+ +P+ + + KE K +V+ Sbjct: 366 GQMFHGKPLYVAIAQKKEDRKMQLQVQ 392 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELN 313 LY+ NL L+E F++F + + + D R GY FV+F E+A A +N Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 314 G 316 G Sbjct: 263 G 263
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%) Frame = +2 Query: 95 PAPPSSPDT-----IVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAG 253 P P ++P + V +++V + +K DL++FFSQ+ V + +DR S G Sbjct: 15 PVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 254 YGFVSFGTKEEAEAALSE 307 YGF++F T+E+A+ L E Sbjct: 75 YGFITFETQEDAQKILQE 92
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E P S P L+V L+ L Sbjct: 535 EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT-----LFVKGLSEDTTEETL 589 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 590 KESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647 Query: 359 DK 364 K Sbjct: 648 PK 649
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E P S P L+V L+ L Sbjct: 534 EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT-----LFVKGLSEDTTEETL 588 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 589 KESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646 Query: 359 DK 364 K Sbjct: 647 PK 648
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L + L++ FS F P+S +V DR +S G+GF++F E A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 308 LNGKELMERPV 340 +NG+ L R + Sbjct: 67 MNGESLDGRQI 77
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KLY+ L+ LK+ FS FN V+ V ++ +S GYGFV+F +++ A +A+S Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 308 LNGKEL 325 +NG+EL Sbjct: 92 MNGQEL 97
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E P S P L+V L+ L Sbjct: 533 EDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKT-----LFVKGLSEDTTEETL 587 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 588 KESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Query: 359 DK 364 K Sbjct: 646 PK 647
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Frame = +2 Query: 8 EAAAVVEK-FDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 +AA +K DG ++ + V F++ R ++ + K+ + NL ++A D+ Sbjct: 678 DAARTAQKAMDGKVLDAHTLVVTFAR--RNAEASTTSISSGGSTKILIKNLPFEATKRDI 735 Query: 185 KEFFS---QFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRW 352 ++ FS Q V FD+ + G+GFV + T EA++A+ L L+ R ++L+W Sbjct: 736 RDLFSSQGQLKSVRLPKKFDNT-TRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQW 793 Score = 34.7 bits (78), Expect = 0.24 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFF---SQFNPVSANIVFDDRK-----SA 250 PA + D V LYV NL++ L FF S F D R+ S Sbjct: 608 PAGAGAGDEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSM 667 Query: 251 GYGFVSFGTKEEAEAALSELNGKEL 325 GYGFV F + + A A ++GK L Sbjct: 668 GYGFVGFKSIDAARTAQKAMDGKVL 692
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGT 277 +SPD +Y+ +V LAW L+ FSQ+ V + + +DR +S G+GFV+F Sbjct: 2 ASPDV---EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKD 58 Query: 278 KEEAEAALSELNGKELMERPV 340 ++ + A+ +NG++L R + Sbjct: 59 EKSMKDAIEGMNGQDLDGRSI 79
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L++ L++ FS++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEGVK 403 +NGK + R + R D+ +D G + Sbjct: 67 MNGKSVDGRQI----RVDQAGKSSDNRSRGYR 94
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L++ L++ FS++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEGVK 403 +NGK + R + R D+ +D G + Sbjct: 67 MNGKSVDGRQI----RVDQAGKSSDNRSRGYR 94
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW + L+ F+ + + + V DR +S G+GFV+F ++ A+ Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66 Query: 302 SELNGKELMERPVILRWREDK 364 +NGKEL R + + + + Sbjct: 67 ENMNGKELDGRNITVNQAQSR 87
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Frame = +2 Query: 5 EEAAA--VVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSA 178 EE AA ++ +G +NG+ I V S RK +T LYV N+ + Sbjct: 174 EEGAAKEAIDALNGMLLNGQEIYVAPHLS-RKERDSQLEETKAHYTNLYVKNINSETTDE 232 Query: 179 DLKEFFSQFNP-VSANIVFD-DRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +E F++F P VSA++ D D K G+GFV++ E+A A+ LN EL Sbjct: 233 QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 283 Score = 43.1 bits (100), Expect = 7e-04 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 11/132 (8%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFS--KSFRKPAPPSSPDTI----VAKYK---LYVSNL 157 E+A VE + ++NG + V + K+ R + +AKY+ L+V NL Sbjct: 269 EDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNL 328 Query: 158 AWKARSADLKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKEEAEAALSELNGKELME 331 L+E F+ + +++ V ++ KS G+GFV F T EEA A++E N + + Sbjct: 329 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 388 Query: 332 RPVILRWREDKE 367 +P+ + + K+ Sbjct: 389 KPLYVAIAQRKD 400 Score = 36.6 bits (83), Expect = 0.062 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSK---SFRKPAPPSSPDTIVAKYKLYVSNLAWKARS 175 E +E+ + I GR+ ++ +S+ S RK + +++ NL + Sbjct: 89 EAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN----------IFIKNLHPDIDN 138 Query: 176 ADLKEFFSQFNPV-SANIVFDDR-KSAGYGFVSF---GTKEEAEAALSE--LNGKELMER 334 L + FS F + S+ I D+ KS G+GFV F G +EA AL+ LNG+E+ Sbjct: 139 KALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 198 Query: 335 PVILRWREDKE 367 P + R D + Sbjct: 199 PHLSRKERDSQ 209 Score = 36.6 bits (83), Expect = 0.062 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 LYV +L A L + FS VS+ V D + S GY +V+F E A+ +L Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 311 NGKELMERPVILRWREDKETVKADG 385 N + R + W + +++ G Sbjct: 99 NYTPIKGRLCRIMWSQRDPSLRKKG 123
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 47.4 bits (111), Expect = 4e-05 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E P S P L+V L+ L Sbjct: 533 EDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT-----LFVKGLSEDTTEETL 587 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 588 KESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Query: 359 DK 364 K Sbjct: 646 PK 647
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 47.4 bits (111), Expect = 4e-05 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E P S P L+V L+ L Sbjct: 536 EDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT-----LFVKGLSEDTTEETL 590 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 591 KESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648 Query: 359 DK 364 K Sbjct: 649 PK 650
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFS-QFNPVSANIVFD--DRKSAGYGFVSFGTKEEAEAALSE 307 +LYV NL+W L+ F+ Q V A +++D +S G+GFV+ + +E + A++ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 308 LNGKELMERPV 340 LNG +L R + Sbjct: 318 LNGADLDGRQI 328 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V NL++ SA L + F V V D+ +S G+GFV+ T E EAA + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 308 LNGKELMERPV 340 NG E RP+ Sbjct: 160 FNGYEFEGRPL 170
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 47.0 bits (110), Expect = 5e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRVVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 47.0 bits (110), Expect = 5e-05 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Frame = +2 Query: 2 AEEAAAVVE--KFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARS 175 A+ A A ++ K D H++ R + + ++ + K+ + NL ++A Sbjct: 656 AQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATK 715 Query: 176 ADLKEFFSQFNPVSANIVFD--DRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILR 349 D++ F + + + V DR + G+GF F + EAE A+ L L+ R ++L Sbjct: 716 KDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVLE 775 Query: 350 WREDKETVKADGEVEGV--KVDDQ 415 + ++E V + E+E + KV +Q Sbjct: 776 F-ANEEAVDPEQEIEQIEKKVGEQ 798 Score = 38.1 bits (87), Expect = 0.021 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Frame = +2 Query: 116 DTIVAKYKLYVSNLAWKARSADLKEFFSQFNP-VSANIVF--DDRK-----SAGYGFVSF 271 D V L+V NL + + E F + VSA I D ++ S G+GFV F Sbjct: 591 DEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDF 650 Query: 272 GTKEEAEAALSELNGKELMERPVILR 349 TK +A+AAL+ ++G +L + +++R Sbjct: 651 RTKAQAQAALAAMDGYKLDQHELVVR 676
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 47.0 bits (110), Expect = 5e-05 Identities = 26/70 (37%), Positives = 41/70 (58%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++Y+ L++ R D++ FFS + ++ D K+ GYGFV F +A+ A+ ELNG Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYG----RLLEVDLKN-GYGFVEFEDSRDADDAVYELNG 57 Query: 317 KELMERPVIL 346 KEL VI+ Sbjct: 58 KELCGERVIV 67 Score = 34.7 bits (78), Expect = 0.24 Identities = 24/78 (30%), Positives = 40/78 (51%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+L V NL+ + DLK+F Q V+ +R + G + F + + + AL +L Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE--GVIEFRSYSDMKRALDKL 166 Query: 311 NGKELMERPVILRWREDK 364 +G E+ R + R EDK Sbjct: 167 DGTEINGRNI--RLIEDK 182
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L++ L++ FS++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEGVK 403 +NGK + R + R D+ +D G + Sbjct: 67 MNGKSVDGRQI----RVDQAGKSSDNRSRGYR 94
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L++ L++ FS++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEGVK 403 +NGK + R + R D+ +D G + Sbjct: 67 MNGKSVDGRQI----RVDQAGKSSDNRSRGYR 94
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L++ L++ FS++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEGVK 403 +NGK + R + R D+ +D G + Sbjct: 67 MNGKSVDGRQI----RVDQAGKSSDNRSRGYR 94
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRIVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRIVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRIVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRIVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-----------EFSKSFR------KPAPPSSPDTIVAK 133 E A V G I+G+V+ V E + F K PP P Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------ 303 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRKSAGYGFVSFGTKEEAEAALSEL 310 +Y+ NL LKE FS F +S A ++ + + G+G V F + EEA A+ E+ Sbjct: 304 --IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 311 NGKELMERPV 340 NG+ + +P+ Sbjct: 362 NGRIVGSKPL 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V N+ LKE F ++ P + V D KS G+GFV + T E A+ A+ +L+ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Query: 314 GKEL-------------MERPVILRWREDKETVKADGEVEGVKV 406 GK + +ER LR R ++ +K GV + Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +2 Query: 107 SSPDTIVAKY---KLYVSNLAWKARSADLKEFFSQF-NPVSANIVFDDRKSAGYGFVSFG 274 S PD + K +++ NL + L FS F N +S +V DD S GY +V F Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153 Query: 275 TKEEAEAALSELNGKELMERPV 340 + A A+ +NG L R V Sbjct: 154 SLAAANRAIWHMNGVRLNNRQV 175 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAAL 301 K LYV +L L + F P+ + D R GYG+V+F +AE AL Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 302 SELNGKELMERPVILRWREDKETVKADG 385 + +N + +P L W + + ++ G Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSG 104
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 E+A + + +I GR I++E S + P + L+V L+ L Sbjct: 534 EDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKT---------LFVKGLSEDTTEETL 584 Query: 185 KEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWRE 358 KE F V A IV D S G+GFV F ++E+A+AA + E+ V L W + Sbjct: 585 KESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 642 Query: 359 DK 364 K Sbjct: 643 PK 644
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 46.2 bits (108), Expect = 8e-05 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Frame = +2 Query: 77 SKSFRKPAPPSSPD-TIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RK 244 S + K P S+P+ + L+VS +A + + +L++ FS+F V+ + + + Sbjct: 81 STALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKA 140 Query: 245 SAGYGFVSFGTKEEAEAALSELNGKELMER 334 S G+GF+SF T EEA +A+ LN +E R Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFYGR 170
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++Y+ L+++AR D++ FF + I+ D K+ GYGFV F +A+ A+ ELNG Sbjct: 3 RVYIGRLSYQARERDVERFFKGYG----KILEVDLKN-GYGFVEFDDLRDADDAVYELNG 57 Query: 317 KELMERPVIL 346 K+L VI+ Sbjct: 58 KDLCGERVIV 67 Score = 34.7 bits (78), Expect = 0.24 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 16/135 (11%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSS----------------PDTIVAKYK 139 +A V + +G D+ G + VE ++ R+ S P T +Y+ Sbjct: 47 DADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRT-EYR 105 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGK 319 L V NL+ + DLK++ Q V+ RK+ G + F + + + AL +L+G Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE--GVIEFVSYSDMKRALEKLDGT 163 Query: 320 ELMERPVILRWREDK 364 E+ R + R EDK Sbjct: 164 EVNGRKI--RLVEDK 176
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++Y+ L+++AR D++ FF + I+ D K+ GYGFV F +A+ A+ ELNG Sbjct: 3 RVYIGRLSYQARERDVERFFKGYG----KILEVDLKN-GYGFVEFDDLRDADDAVYELNG 57 Query: 317 KELMERPVIL 346 K+L VI+ Sbjct: 58 KDLCGERVIV 67 Score = 34.7 bits (78), Expect = 0.24 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 16/135 (11%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSS----------------PDTIVAKYK 139 +A V + +G D+ G + VE ++ R+ S P T +Y+ Sbjct: 47 DADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRT-EYR 105 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGK 319 L V NL+ + DLK++ Q V+ RK+ G + F + + + AL +L+G Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE--GVIEFVSYSDMKRALEKLDGT 163 Query: 320 ELMERPVILRWREDK 364 E+ R + R EDK Sbjct: 164 EVNGRKI--RLVEDK 176
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ P VS +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ P VS +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ P VS +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ P VS +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVF----DDRKSAGYGFVSFGTKEEAEAALS 304 +LYV +L + L+ F F + NIV D +S GYGF++F E A AL Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALE 322 Query: 305 ELNGKELMERPV 340 +LNG EL RP+ Sbjct: 323 QLNGFELAGRPM 334
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = +2 Query: 38 GHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVS 217 G + R E S + P V + L+V+ + +A D+ + F+++ + Sbjct: 41 GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 100 Query: 218 ANIVFDDRKSA---GYGFVSFGTKEEAEAALSELNGKELMERPVILRW 352 + DR++ GY V + T +EA+AA+ LNG++LM +P+ + W Sbjct: 101 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = +2 Query: 38 GHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVS 217 G + R E S + P V + L+V+ + +A D+ + F+++ + Sbjct: 41 GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 100 Query: 218 ANIVFDDRKSA---GYGFVSFGTKEEAEAALSELNGKELMERPVILRW 352 + DR++ GY V + T +EA+AA+ LNG++LM +P+ + W Sbjct: 101 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSEL 310 ++V L+W LK+ F V V +R +S GYG+V F K AE A+ E+ Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 311 NGKELMERPV 340 GKE+ RP+ Sbjct: 230 QGKEIDGRPI 239 Score = 43.5 bits (101), Expect = 5e-04 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Frame = +2 Query: 11 AAAVVEKFDGHDINGRVIKVEFSKSFRKPA-----------PPSSPDTIVAKYKLYVSNL 157 A +++ G +I+GR I + S S KPA PS P L++ NL Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTS--KPAGNNDRAKKFGDTPSEPSDT-----LFLGNL 274 Query: 158 AWKARSADLKEFFSQFNPV-SANIVF--DDRKSAGYGFVSFGTKEEAEAALSELNGKELM 328 ++ A + E F++ V S I + + G+G+V F E+A+ AL L G+ + Sbjct: 275 SFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYID 334 Query: 329 ERPVIL 346 RPV L Sbjct: 335 NRPVRL 340
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKY-----KLYVSNLAWKAR 172 +A A + +G+ ++ + V S A + K K+ + NL ++A Sbjct: 650 QAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQAT 709 Query: 173 SADLKEFFSQFNPVSANIVFD--DRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 D++ F + + + V DR + G+GF F + EAE A+ L L+ R ++L Sbjct: 710 KKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVL 769 Query: 347 RWREDKETVKADGEVEGV--KVDDQ 415 + ++E + A+ E++ + KV +Q Sbjct: 770 EF-ANEEAIDAEEEIQRIEKKVGEQ 793 Score = 38.5 bits (88), Expect = 0.016 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNP-VSANI-VFDDRK------SAG 253 A + ++A L++ NL + + L E F + VSA I D K S G Sbjct: 580 AADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMG 639 Query: 254 YGFVSFGTKEEAEAALSELNGKELMERPVILR 349 +GF F TK +A+AAL+ +NG L +++R Sbjct: 640 FGFADFKTKAQAQAALAVMNGYTLDRHTLVVR 671
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFD--DRKSAGYGFVSFGTKEEAEAALSEL 310 ++VS LA + S +L +FF Q PV A IV D +S G +V F ++ +AA++ L Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300 Query: 311 NGKELMERPVILRWREDKETVKA 379 +GK L+ PVI++ E ++ KA Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKA 323 Score = 37.7 bits (86), Expect = 0.028 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR-KSAGYGFVSFGTKEEAEAALSE 307 ++L VSN+ + D+K F F + ++ DD+ +S G+G++ + A AL + Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399 Query: 308 LNGKELMERPVILRWREDKETVK 376 +NG +L R + + DK T + Sbjct: 400 MNGFDLAGRNMRVCLGNDKFTTE 422
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAAL 301 +Y+ +V LAW L+ F+Q+ V + + +DR +S G+GFV+F ++ + A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66 Query: 302 SELNGKELMERPV 340 +NG++L R + Sbjct: 67 EGMNGQDLDGRSI 79
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++YV L + R DL+ FF + ++ + GYGFV F +A+ A+ ELNG Sbjct: 4 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKN-----GYGFVEFEDYRDADDAVYELNG 58 Query: 317 KELMERPVIL 346 KEL+ V++ Sbjct: 59 KELLGERVVV 68 Score = 33.1 bits (74), Expect = 0.69 Identities = 24/90 (26%), Positives = 43/90 (47%) Frame = +2 Query: 77 SKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGY 256 S+S + PP + +Y+L V NL+ + DLK++ Q V+ R++ Sbjct: 105 SRSSSRYGPP-----LRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-- 157 Query: 257 GFVSFGTKEEAEAALSELNGKELMERPVIL 346 G V F + + + A+ +L+ EL R + L Sbjct: 158 GVVEFASLSDMKTAIEKLDDTELNGRRIHL 187
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Frame = +2 Query: 2 AEEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSAD 181 A++A + +G + + IKV +++ PSS ++ LY+S L D Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-------PSSE--VIKDANLYISGLPRTMTQKD 121 Query: 182 LKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNG 316 +++ FS+F + + V D+ S G F+ F + EAE A++ NG Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = +2 Query: 125 VAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEA 295 + + L V+ L +L+ FS V + + D+ S GYGFV++ T ++AE Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76 Query: 296 ALSELNGKELMERPVILRW-REDKETVK 376 A++ LNG L + + + + R E +K Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIK 104 Score = 37.4 bits (85), Expect = 0.037 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Frame = +2 Query: 113 PDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKE 283 P + + +++ NL A L + F F V+ V F+ K G+GFV+ E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 284 EAEAALSELNGKELMERPVILRWREDK 364 EA A++ LNG L ++ + + ++ +K Sbjct: 297 EAAMAIASLNGYRLGDKILQVSFKTNK 323
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 141 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 36.6 bits (83), Expect = 0.062 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NL+ + + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 352 NGYRLGDRVLQVSFKTNK 369 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAA 298 +K L V+ L + + F + + + D+ +S GYGFV++ ++AE A Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 299 LSELNGKELMERPV 340 ++ LNG L + + Sbjct: 97 INTLNGLRLQTKTI 110
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 98 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 148 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197 Score = 36.6 bits (83), Expect = 0.062 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NL+ + + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 359 NGYRLGDRVLQVSFKTNK 376 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAA 298 +K L V+ L + + F + + + D+ +S GYGFV++ ++AE A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 299 LSELNGKELMERPV 340 ++ LNG L + + Sbjct: 104 INTLNGLRLQTKTI 117
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR--KSAGYGFVSFGTKEEAEAALSE 307 +LYV +L + L+ F F + S ++ D +S GYGF++F E A+ AL + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 308 LNGKELMERPV 340 LNG EL RP+ Sbjct: 311 LNGFELAGRPM 321
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR--KSAGYGFVSFGTKEEAEAALSE 307 +LYV +L + L+ F F + S ++ D +S GYGF++F E A+ AL + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 308 LNGKELMERPV 340 LNG EL RP+ Sbjct: 311 LNGFELAGRPM 321
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 44.3 bits (103), Expect = 3e-04 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYK-------LYVSNLAW 163 ++AA V+ K H ++GR +KV+ P A K ++V+NL + Sbjct: 124 KKAAEVLNK---HSLSGRPLKVK--------EDPDGEHARRAMQKAGRLGSTVFVANLDY 172 Query: 164 KARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNGKELMERP 337 K LKE FS V + +D+ KS G G V+F EA A+S NG+ L +RP Sbjct: 173 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 232 Query: 338 VILRWRE 358 + ++ E Sbjct: 233 MHVKMDE 239
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 103 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 153 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202 Score = 36.6 bits (83), Expect = 0.062 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NL+ + + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 364 NGYRLGDRVLQVSFKTNK 381 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAA 298 +K L V+ L + + F + + + D+ +S GYGFV++ ++AE A Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 299 LSELNGKELMERPV 340 ++ LNG L + + Sbjct: 109 INTLNGLRLQTKTI 122
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/76 (31%), Positives = 39/76 (51%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++Y+ L + D++ FF + + D G+GFV F K +AE A+ +LNG Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIR-----DVLLKNGFGFVEFDDKRDAEDAVHDLNG 58 Query: 317 KELMERPVILRWREDK 364 KEL VIL + + + Sbjct: 59 KELGGERVILDYSKPR 74
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 141 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NLA A + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 338 NGYRLGDRVLQVSFKTNK 355 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVS 268 +P S +T +K L + L +LK F + + + D+ +S GYGFV+ Sbjct: 27 SPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86 Query: 269 FGTKEEAEAALSELNGKELMERPV 340 + ++AE A++ LNG L + + Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTI 110
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 141 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVS 268 +P S +T +K L V+ L +LK F + + + D+ +S GYGFV+ Sbjct: 27 SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86 Query: 269 FGTKEEAEAALSELNGKELMERPV 340 + ++AE A++ LNG L + + Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTI 110 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NLA A + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 141 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVS 268 +P S +T +K L V+ L +LK F + + + D+ +S GYGFV+ Sbjct: 27 SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86 Query: 269 FGTKEEAEAALSELNGKELMERPV 340 + ++AE A++ LNG L + + Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTI 110 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NLA A + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A + +G + + IKV S+ +P+ S D LYVS L +L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMTQKEL 141 Query: 185 KEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 ++ FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 98 APPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVS 268 +P S +T +K L V+ L +LK F + + + D+ +S GYGFV+ Sbjct: 27 SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86 Query: 269 FGTKEEAEAALSELNGKELMERPV 340 + ++AE A++ LNG L + + Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTI 110 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKEEAEAALSEL 310 ++V NLA A + L + F F V+ V F+ K G+GFV+ +EA A++ L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 311 NGKELMERPVILRWREDK 364 NG L +R + + ++ +K Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGT 277 +SPD+ K+++ L+W+ L+E+F QF V +V D ++S G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 278 KEEAEAALSE 307 + + L++ Sbjct: 71 QAGVDKVLAQ 80
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGT 277 +SPD+ K+++ L+W+ L+E+F QF V +V D ++S G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 278 KEEAEAALSE 307 + + L++ Sbjct: 71 QAGVDKVLAQ 80
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGT 277 +SPD+ K+++ L+W+ L+E+F QF V +V D ++S G+GFV+F Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70 Query: 278 KEEAEAALSE 307 + + L++ Sbjct: 71 QAGVDKVLAQ 80
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/76 (32%), Positives = 42/76 (55%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++Y+ L +A D++ FF + +S I+ + G+GFV F + +A+ A+ +LNG Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN-----GFGFVDFQDQRDADDAVHDLNG 57 Query: 317 KELMERPVILRWREDK 364 KEL VIL + K Sbjct: 58 KELCGERVILEFPRRK 73
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 43.5 bits (101), Expect = 5e-04 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V+NL +K LKE FS V + +D+ KS G G V+F EA A+S N Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFN 263 Query: 314 GKELMERPVILRWRE 358 G+ L +RP+ ++ E Sbjct: 264 GQLLFDRPMHVKMDE 278
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Frame = +2 Query: 143 YVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELN 313 +VS L+ R+ DLK FS++ V V + +S G YGFV+ T EEA ++ L+ Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 314 GKELMERPVILRWREDKETVKADGEVEGVKVDDQ 415 EL + + + KA E G +V D+ Sbjct: 491 KTELHGKMISVE--------KAKSEPAGKRVPDR 516
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 43.1 bits (100), Expect = 7e-04 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL++ L ++ L++ F+++ +S +V DR +S G+GFV+F ++A+ A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 308 LNGKELMERPVILRWREDKETVKADGEVEG 397 +NGK + R + R D + K+ GE G Sbjct: 66 MNGKSVDGRQI----RVD-QAGKSSGERRG 90
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD--RKSAGYGFVSFGT 277 PS P + +V NL++ DL +FF + S +V D +S G+G+V F T Sbjct: 89 PSEPP-----FTAHVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFET 142 Query: 278 KEEAEAALSELNGKELMERPVILRWREDKET 370 + AAL+ L+G++LM RPV + E + + Sbjct: 143 ADTLSAALA-LSGEDLMGRPVRITVAEPRRS 172
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +A + +G + + IKV S+ +P+ S D LYVS L +++ Sbjct: 92 DADKAINTLNGLKLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMSQKEME 142 Query: 188 EFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 + FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 143 QLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAA 298 A + ++V NL+ +A + L + F F V+ V D K G+GFV+ +EA A Sbjct: 282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Query: 299 LSELNGKELMERPVILRWREDKE 367 ++ LNG L ER + + ++ K+ Sbjct: 342 IASLNGYRLGERVLQVSFKTSKQ 364 Score = 36.2 bits (82), Expect = 0.081 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Frame = +2 Query: 95 PAPPSSP------DTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KS 247 PA P+ P T +K L V+ L + K F + + + D+ +S Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79 Query: 248 AGYGFVSFGTKEEAEAALSELNGKELMERPV 340 GYGFV++ +A+ A++ LNG +L + + Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 43.1 bits (100), Expect = 7e-04 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 +A + +G + + IKV S+ +P+ S D LYVS L +++ Sbjct: 92 DADKAINTLNGLKLQTKTIKV----SYARPSSASIRDA-----NLYVSGLPKTMSQKEME 142 Query: 188 EFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELNGKE 322 + FSQ+ + + + D+ S G GF+ F + EAE A+ LNG++ Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAA 298 A + ++V NL+ +A + L + F F V+ V D K G+GFV+ +EA A Sbjct: 282 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Query: 299 LSELNGKELMERPVILRWREDKE 367 ++ LNG L ER + + ++ K+ Sbjct: 342 IASLNGYRLGERVLQVSFKTSKQ 364 Score = 36.2 bits (82), Expect = 0.081 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Frame = +2 Query: 95 PAPPSSP------DTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KS 247 PA P+ P T +K L V+ L + K F + + + D+ +S Sbjct: 20 PALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79 Query: 248 AGYGFVSFGTKEEAEAALSELNGKELMERPV 340 GYGFV++ +A+ A++ LNG +L + + Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 43.1 bits (100), Expect = 7e-04 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Frame = +2 Query: 5 EEAAAV--VEKFDGHDIN-GRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARS 175 E A AV +E GH++ GR + VE S+ P P ++ +K++V N++ S Sbjct: 44 ENAGAVRAIEALHGHELRPGRALVVEMSR----PRPLNT-------WKIFVGNVSAACTS 92 Query: 176 ADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +L+ F + V V D Y FV + +A+AA+++LNGKE+ Sbjct: 93 QELRSLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQLNGKEV 137
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 43.1 bits (100), Expect = 7e-04 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Frame = +2 Query: 5 EEAAAV--VEKFDGHDIN-GRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARS 175 E A AV +E GH++ GR + VE S+ P P ++ +K++V N++ S Sbjct: 44 ENAGAVRAIEALHGHELRPGRALVVEMSR----PRPLNT-------WKIFVGNVSAACTS 92 Query: 176 ADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +L+ F + V V D Y FV + +A+AA+++LNGKE+ Sbjct: 93 QELRSLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQLNGKEV 137
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 L V L+ DL+E FS++ P+S N+V+D R +S G+ FV F ++++ A+ Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178 Query: 311 NGKELMERPV 340 NG EL R + Sbjct: 179 NGMELDGRRI 188
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 42.7 bits (99), Expect = 9e-04 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKS---AGYGFVSFGTKEEAEAALSEL 310 L+V L ARS L+E FSQ PV V ++ S G+G+V+F E+ + AL E+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 311 N------------GKELMERPVILRWREDKETVKADGEVEGVKVDDQ 415 K+L + R E+ E+ K + + + KV D+ Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADK 111
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 L V L+ DL+E FS++ P+S N+V+D R +S G+ FV F ++++ A+ Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180 Query: 311 NGKELMERPV 340 NG EL R + Sbjct: 181 NGMELDGRRI 190
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 42.7 bits (99), Expect = 9e-04 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V+NL +K LKE FS V + +D+ KS G G V+F EA A+S N Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 264 Query: 314 GKELMERPVILRWRE 358 G+ L +RP+ ++ E Sbjct: 265 GQLLFDRPMHVKMDE 279
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 42.7 bits (99), Expect = 9e-04 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = +2 Query: 53 GRVIKVEFSKSFRKPAPPSSPDTIVAKYK-LYVSNLAWKARSADLKEFFSQFNPVSANIV 229 G V+ VE++ +P P ++AK K L+V NLA L++ FS+F + Sbjct: 318 GNVVTVEWADPVEEPDPE-----VMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV-- 370 Query: 230 FDDRKSAGYGFVSFGTKEEAEAALSELNGKEL--MERPVILRWREDKE 367 +K Y FV F + A A+ E+NGKE+ E ++L DK+ Sbjct: 371 ---KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKK 415
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 42.7 bits (99), Expect = 9e-04 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Frame = +2 Query: 143 YVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELN 313 +VS L+ R+ DLK FS++ V V + +S G YGFV+ T EEA ++ L+ Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 314 GKELMERPVILRWREDKETVKADGEVEGVKVDDQ 415 EL + + + KA E G K D+ Sbjct: 469 KTELHGKMISVE--------KAKNEPVGKKTSDK 494
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ V S +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V N+ ++A LK+ FS+ V S +V+D K GYGF + +E A +A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 311 NGKELMER 334 NG+E R Sbjct: 78 NGREFSGR 85
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 42.7 bits (99), Expect = 9e-04 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = +2 Query: 125 VAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEA 295 + + L V+ L +L+ FS V + + D+ S GYGFV++ T ++AE Sbjct: 17 IGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76 Query: 296 ALSELNGKELMERPVILRW-REDKETVK 376 A+S LNG L + + + + R E +K Sbjct: 77 AISTLNGLRLQSKTIKVSYARPSSEVIK 104 Score = 36.2 bits (82), Expect = 0.081 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Frame = +2 Query: 113 PDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIV---FDDRKSAGYGFVSFGTKE 283 P + + +++ NL A L + F F V+ V F+ K G+GFV+ E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 284 EAEAALSELNGKELMERPVILRWREDK 364 E+ A++ LNG L ++ + + ++ +K Sbjct: 297 ESAMAIASLNGYRLGDKILQVSFKTNK 323
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 12/103 (11%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSE 307 K++V L ++EF+SQF ++ IV D ++S G+GFV+F K E +AA+ + Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 308 ----LNGKELMERPVILRWREDKETVKADGE-----VEGVKVD 409 ++GK + + + R+DK +++ V GV+ D Sbjct: 84 RPHIIDGKTVDPKRAVP--RDDKNRSESNVSTKRLYVSGVRED 124 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Frame = +2 Query: 125 VAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEA 295 V+ +LYVS + L E+F+++ V+ + + D+ K G+GFV+F + + Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQ 170 Query: 296 ALSE----LNGKELMERPVILRWREDKETVKADGEVEGVKVDD 412 + + +NG R + + K + D E G + D Sbjct: 171 CVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGGRSRD 213
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Frame = +2 Query: 11 AAAVVEKFDGHDIN-GRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 A +E GH++ GR + VE S+ P P ++ +K++V N++ S +L+ Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSR----PRPLNT-------WKIFVGNVSAACTSQELR 96 Query: 188 EFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 F + V V D Y FV + +A+AA+++LNGKE+ Sbjct: 97 SLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQLNGKEV 137
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Frame = +2 Query: 11 AAAVVEKFDGHDIN-GRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 A +E GH++ GR + VE S+ P P ++ +K++V N++ S +L+ Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSR----PRPLNT-------WKIFVGNVSAACTSQELR 96 Query: 188 EFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 F + V V D Y FV + +A+AA+++LNGKE+ Sbjct: 97 SLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQLNGKEV 137
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA---GYGFVSFGTKEEAEAALSEL 310 +YV NL++ ADL F+++ V + DR++ G+GFV E AA+ L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 311 NGKELMERPVILRWREDKETVKADGEVEG 397 +G E M R + + + +E G G Sbjct: 63 DGAEWMGRDLKVNKAKPRENRSGGGSFGG 91
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A V +G + + IKV F++ PSS + LYVS L +L Sbjct: 250 QDAEQAVNVLNGLRLQNKTIKVSFAR-------PSSD--AIKGANLYVSGLPKTMTQQEL 300 Query: 185 KEFFSQFNPVSANIVF----DDRKSAGYGFVSFGTKEEAEAALSELNG 316 + F+ F + + + +D ++ G GF+ F +EEA A+ LNG Sbjct: 301 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDD--RKSAGYGFVSFGTKEEAEAALS 304 Y +++ NLA + A L + F F V S IV D + GYGFVS +EA A+ Sbjct: 438 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 497 Query: 305 ELNGKELMERPVILRWREDK 364 LNG + R + + ++ +K Sbjct: 498 ALNGYTMGNRVLQVSFKTNK 517 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +2 Query: 242 KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +S GYGFV++ ++AE A++ LNG L + + Sbjct: 237 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTI 269
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSE 307 ++L+V NL L + FS++ + V DR K+ G+GFVSF ++ A E Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89 Query: 308 LNGKELMERPVIL 346 NGK + RPV L Sbjct: 90 KNGKYIGSRPVKL 102
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 ++A V +G + + IKV F++ PSS + LYVS L +L Sbjct: 214 QDAEQAVNVLNGLRLQNKTIKVSFAR-------PSSD--AIKGANLYVSGLPKTMTQQEL 264 Query: 185 KEFFSQFNPVSANIVF----DDRKSAGYGFVSFGTKEEAEAALSELNG 316 + F+ F + + + +D ++ G GF+ F +EEA A+ LNG Sbjct: 265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPV-SANIVFDD--RKSAGYGFVSFGTKEEAEAALS 304 Y +++ NLA + A L + F F V S IV D + GYGFVS +EA A+ Sbjct: 402 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461 Query: 305 ELNGKELMERPVILRWREDK 364 LNG + R + + ++ +K Sbjct: 462 ALNGYTMGNRVLQVSFKTNK 481 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +2 Query: 242 KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 +S GYGFV++ ++AE A++ LNG L + + Sbjct: 201 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTI 233
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 42.0 bits (97), Expect = 0.001 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L W L+ +FSQ+ V ++ D+ +S G+GFV F L+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 308 ----LNGKELMERPVILRWREDKETVKADGEVEGVKVDD 412 L+G+ + +P R + + T +G +G + D+ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDN 109
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V NL + R L E F Q P++ + DR K +GFV F E A++ LN Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71 Query: 314 GKELMERPVILRWR 355 G L RP+ +++R Sbjct: 72 GIRLYGRPINVQYR 85
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 12/107 (11%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAK-----YKLYVSNLAWKARSADLKEFFSQF 205 H ++GR I + P +P T+ YK+++ L DL+ FF+++ Sbjct: 70 HTLDGRTIDPK----------PCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 119 Query: 206 NPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSE----LNGKEL 325 V+ ++ D +KS G+GF+SF + E +E LNGK++ Sbjct: 120 GKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQV 166 Score = 35.0 bits (79), Expect = 0.18 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVF---DDRKSAGYGFVSFGTKEEAEAALSE 307 KL+V L+W+ +L +F +F + +V + +S G+GFV+F L Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 308 ----LNGKELMERP 337 L+G+ + +P Sbjct: 68 GPHTLDGRTIDPKP 81
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L W L+ +FSQ+ V ++ D+ +S G+GFV F L+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 308 ----LNGKELMERPVILRWREDKETVKADGEVEGVKVD 409 L+G+ + +P R + + T +G +G + D Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQF-NPVSANIVFD--DRKSAGYGFVSFGTKEEAEAAL 301 ++K+++ L+W DLK++FS+F + V + D +S G+GFV F E + + Sbjct: 94 EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 153 Query: 302 SE----LNGKELMERPVILRWREDKETVK 376 + LNGK + P + + KE VK Sbjct: 154 DQKEHKLNGKVI--DPKRAKAMKTKEPVK 180
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNP-VSANIVFD--DRKSAGYGFVSFGTKEEAEAAL 301 ++K+++ L+W DLK++FS+F V + D +S G+GFV F E + + Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Query: 302 SE----LNGKELMERPVILRWREDKETVK 376 + LNGK + P + + KE VK Sbjct: 156 DQKEHKLNGKVI--DPKRAKAMKTKEPVK 182
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Frame = +2 Query: 131 KYKLYVSNLAWKARSADLKEFFSQFNP-VSANIVFD--DRKSAGYGFVSFGTKEEAEAAL 301 ++K+++ L+W DLK++FS+F V + D +S G+GFV F E + + Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Query: 302 SE----LNGKELMERPVILRWREDKETVK 376 + LNGK + P + + KE VK Sbjct: 156 DQKEHKLNGKVI--DPKRAKAMKTKEPVK 182
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 K++V L + A L+++F F + +V DR KS GYGFV+ + AE A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 308 LN 313 N Sbjct: 72 PN 73
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 KL++ L + LK F + P+S ++ DR KS G+ F++F +A+ A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 311 NGKEL 325 NGK L Sbjct: 69 NGKSL 73
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 KL VSNL + AD++E F++F + V DR +S G V F K +A A+ + Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 165 Query: 311 NGKELMERPV 340 NG L RP+ Sbjct: 166 NGVPLDGRPM 175
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 41.2 bits (95), Expect = 0.003 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDD--RKSAGYGFVSFGTKEEAEAALSEL 310 L++ +L LK F ++ VSA + D +KS G+G+++F KEEAE A+ EL Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 311 -----NGKELMERP 337 NGKE+ P Sbjct: 153 NYTKVNGKEIRIMP 166
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V+NL +K LKE FS V + +D+ KS G G V+F EA A+S N Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285 Query: 314 GKELMERPVILRWREDKETVKAD 382 G+ L +RP+ ++ +DK D Sbjct: 286 GQFLFDRPMHVK-MDDKSVPHED 307
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 KL VSNL + AD++E F++F + V DR +S G V F K +A A+ + Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 164 Query: 311 NGKELMERPV 340 NG L RP+ Sbjct: 165 NGVPLDGRPM 174
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +2 Query: 236 DRKSAGYGFVSFGTKEEAEAALSELNGKEL----MERPVILRWREDKETVKADGEVEGVK 403 ++ S GYGFV F TKE A AL L G E+ +E R ED K G+ EG K Sbjct: 577 EKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGK 636
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Frame = +2 Query: 65 KVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLA----WKARSADLKEFFSQFNPVSANIVF 232 K E + A +T + + L+V NL ++ +KEFF + N + + Sbjct: 258 KKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI 317 Query: 233 DDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDKETVK 376 K +G+V F + E+ + AL +LNGK+LM + L + KE++K Sbjct: 318 GSSKR--FGYVDFLSAEDMDKAL-QLNGKKLMGLEIKLEKAKSKESLK 362
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELN 313 ++V+NL +K LKE FS V + +D+ KS G G V+F EA A+S N Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 294 Query: 314 GKELMERPV 340 G+ L +RP+ Sbjct: 295 GQFLFDRPM 303
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFDDRKSA--GYGFVSFGTKEEAEAALSEL 310 ++V +A +L FS++ P+ S +++D K GYGF+S+ +A + EL Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 311 NGKELMERPVILRW---REDKETVKAD 382 NG+ + + + + R+++E + D Sbjct: 257 NGRTVNGSTLFINYHVERKERERIHWD 283
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSE 307 L+V ++ L +FFS F P+ +V D ++S G+GFVSF +++ + AL++ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAK 85
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 K++V L + A L+++F F + +V DR KS GYGFV+ + A+ A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 308 LN 313 N Sbjct: 93 PN 94
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +2 Query: 53 GRVIKVEFSKSFRKPAPPSSPDTIVAKYK-LYVSNLAWKARSADLKEFFSQFNPVSANIV 229 G V VE++ P P ++AK K L+V NLA L++ FSQF + Sbjct: 315 GNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV-- 367 Query: 230 FDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +K Y F+ F ++ A A+ E+NGK+L Sbjct: 368 ---KKLKDYAFIHFDERDGAVKAMEEMNGKDL 396
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +2 Query: 53 GRVIKVEFSKSFRKPAPPSSPDTIVAKYK-LYVSNLAWKARSADLKEFFSQFNPVSANIV 229 G V VE++ P P ++AK K L+V NLA L++ FSQF + Sbjct: 315 GNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV-- 367 Query: 230 FDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +K Y F+ F ++ A A+ E+NGK+L Sbjct: 368 ---KKLKDYAFIHFDERDGAVKAMEEMNGKDL 396
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +2 Query: 53 GRVIKVEFSKSFRKPAPPSSPDTIVAKYK-LYVSNLAWKARSADLKEFFSQFNPVSANIV 229 G V VE++ P P ++AK K L+V NLA L++ FSQF + Sbjct: 225 GNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV-- 277 Query: 230 FDDRKSAGYGFVSFGTKEEAEAALSELNGKEL 325 +K Y F+ F ++ A A+ E+NGK+L Sbjct: 278 ---KKLKDYAFIHFDERDGAVKAMEEMNGKDL 306
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Frame = +2 Query: 77 SKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFN---PVSANIVFDDRKS 247 S S APP PD + + N+ + + L + F+ + P + N FD+ Sbjct: 214 SNSVTLTAPPE-PDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVF 272 Query: 248 AGYGFVSFGTKEEAEAALSELNGKELMERPVILRWR 355 G F +F + EEA+ + LNG E+ R + + W+ Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWK 308
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/80 (23%), Positives = 40/80 (50%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 +LY+ NL +LKE FS + +S + ++ + F+ + AE A +L+G Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEISEAFINAEK---NFAFLKIDYRANAERAKKDLDG 170 Query: 317 KELMERPVILRWREDKETVK 376 + +P+ +R+ + T++ Sbjct: 171 RMRKNKPIRIRFAPNATTIR 190
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSA 220 H I+GRV++ + + + + A P + T+ KL+V + L+E+F ++ + + Sbjct: 72 HTIDGRVVEPKRAVAREESAKPGAHVTVK---KLFVGGIKEDTEEHHLREYFEEYGKIES 128 Query: 221 NIVFDDRKSA---GYGFVSFGTKEEAE 292 + D++S G+GFV+F + + Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVD 155
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%) Frame = +2 Query: 128 AKYKLYVSNLAWKARSADLKEFF-SQFNPV-SANIVFDDRK--SAGYGFVSFGTKEEAEA 295 ++Y ++V +L+ D+ F S++N SA I+ D + S GYGFV F + + ++ Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKS 243 Query: 296 ALSELNGKELMERPV 340 AL+E+ G+ +RP+ Sbjct: 244 ALAEMQGQICGDRPI 258 Score = 35.0 bits (79), Expect = 0.18 Identities = 24/98 (24%), Positives = 39/98 (39%) Frame = +2 Query: 86 FRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFV 265 F A P A ++V L+ +LK F F + + G GFV Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI---VYVKIPPGKGCGFV 343 Query: 266 SFGTKEEAEAALSELNGKELMERPVILRWREDKETVKA 379 F ++ AE A+++L G L + L W ++ + A Sbjct: 344 QFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAA 381
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 ++V L+W L + F ++ V A ++ D + +S GYG+V F T E A+AA++ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 311 NGKELMERPVIL 346 KE+ R V L Sbjct: 325 GTKEIDGRMVNL 336
>SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11| Length = 383 Score = 39.3 bits (90), Expect = 0.010 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +2 Query: 101 PPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTK 280 PP+ P+ + L+V+ + L+ FF+QF + + I A F++F T+ Sbjct: 235 PPADPNIM----SLFVTGVEDDLPEHTLRTFFTQFGQLRSLIC---SHRAHCAFINFATR 287 Query: 281 EEAEAALSELNGKELMER-PVILRWREDKETVKADGE 388 E AEAA GK +++ P+ +RW + K D E Sbjct: 288 EGAEAAAQHCKGKAVIQGCPLRVRWGKPKPLDNMDRE 324
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 39.3 bits (90), Expect = 0.010 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADL 184 EEA A + H ++G ++++ + S A P + + KL+V L DL Sbjct: 59 EEADAAMAA-SPHAVDGNTVELKRAVSREDSARPGAHAKVK---KLFVGGLKGDVAEGDL 114 Query: 185 KEFFSQFNPV-SANIVFDDR--KSAGYGFVSFGTKEEAEAA 298 E FSQF V A I+ D + K G+GFV F + A+ A Sbjct: 115 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVF---DDRKSAGYGFVSFGTKEEAEAALS 304 KL++ L + + L+ F F ++ +V ++S +GFV++ EEA+AA++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 39.3 bits (90), Expect = 0.010 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYK------LYVSNLAWK 166 E+ AV+E + H +NGR + ++ S+++ + D +VA K L+V NL++ Sbjct: 194 EQMKAVLELSESH-LNGRNMLIKDSENY---SGRPDKDDLVAMSKNPPSRILFVGNLSFD 249 Query: 167 ARSADLKEFFSQFNPVSA--NIVFDDR-KSAGYGFVSFGTKEEAEAALSELNGKELMERP 337 L++ F + F+D K G+ F+ F +E + L + + +++ RP Sbjct: 250 VTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRP 309 Query: 338 VILRWREDKETVKADGEVEGV 400 + + + ED+ + +VE V Sbjct: 310 LRMEYGEDRSKRQVRKKVENV 330
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSE 307 K+++ L+W+ L+++FS+F + +V D ++S G+GFV+F + L + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 38.9 bits (89), Expect = 0.013 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%) Frame = +2 Query: 104 PSSPDTIV--AKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF-----------DDRK 244 PSS T + ++V NL + SA L E +F P S +V D + Sbjct: 600 PSSEATAIDGPTVSIFVKNLNFSTTSAQLAE---KFKPFSGFVVAQVKTKPDPKNSDKKL 656 Query: 245 SAGYGFVSFGTKEEAEAALSELNG 316 S G+GF+ F TKE+A A ++ ++G Sbjct: 657 SMGFGFIEFRTKEQAGAVIAAMDG 680
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSE 307 K+++ L+W+ L+++FS+F + +V D ++S G+GFV+F + L + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +2 Query: 113 PDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKE 283 P V + L+V+++ +A+ +++E F + + + DR+ S GY V + T + Sbjct: 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 125 Query: 284 EAEAALSELNGKELMERPVILRW 352 +A AA LNG E+M + + + W Sbjct: 126 QALAAKEALNGAEIMGQTIQVDW 148
>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| Length = 414 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L +KA D+ FFS NPV +I + D + G V F T EEA AA+S+ Sbjct: 290 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| (Nucleolin-like protein mcs94-1) Length = 414 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L +KA D+ FFS NPV +I + D + G V F T EEA AA+S+ Sbjct: 290 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 38.5 bits (88), Expect = 0.016 Identities = 16/45 (35%), Positives = 30/45 (66%) Frame = +2 Query: 233 DDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDKE 367 ++ +S GYGFVS+ + E A+AA+ +N + LM +P+ + + +E Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSF 271 +P DT+ + LYV NL +++ F+ P + V +K Y FV F Sbjct: 217 EPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV---KKIRDYAFVHF 273 Query: 272 GTKEEAEAALSELNGKELMERPV 340 +E+A A+ LNGK L P+ Sbjct: 274 SNREDAVEAMKALNGKVLDGSPI 296 Score = 30.8 bits (68), Expect = 3.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 251 GYGFVSFGTKEEAEAALSELNGKEL 325 GY FV+F K+EA+ A+ +LN E+ Sbjct: 97 GYAFVTFSNKQEAKNAIKQLNNYEI 121
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSF 271 +P DT+ + LYV NL +++ F+ P + V +K Y FV F Sbjct: 217 EPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV---KKIRDYAFVHF 273 Query: 272 GTKEEAEAALSELNGKELMERPV 340 +E+A A+ LNGK L P+ Sbjct: 274 SNREDAVEAMKALNGKVLDGSPI 296 Score = 29.3 bits (64), Expect = 10.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 251 GYGFVSFGTKEEAEAALSELNGKEL 325 GY FV+F K EA+ A+ +LN E+ Sbjct: 97 GYAFVTFSNKVEAKNAIKQLNNYEI 121
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 38.5 bits (88), Expect = 0.016 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAE 292 +++V ++ ADL FS + V + + DR S GYGFV+F T++EA+ Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQ 87
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSF 271 +P DT+ + LYV NL +++ F+ P + V +K Y FV F Sbjct: 217 EPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV---KKIRDYAFVHF 273 Query: 272 GTKEEAEAALSELNGKELMERPV 340 +E+A A+ LNGK L P+ Sbjct: 274 SNREDAVEAMKALNGKVLDGSPI 296
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSF 271 +P DT+ + LYV NL +++ F+ P + V +K Y FV F Sbjct: 217 EPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV---KKIRDYAFVHF 273 Query: 272 GTKEEAEAALSELNGKELMERPV 340 +E+A A+ LNGK L P+ Sbjct: 274 SNREDAVEAMKALNGKVLDGSPI 296 Score = 30.8 bits (68), Expect = 3.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 251 GYGFVSFGTKEEAEAALSELNGKEL 325 GY FV+F K+EA+ A+ +LN E+ Sbjct: 97 GYAFVTFSNKQEAKNAIKQLNNYEI 121
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +2 Query: 182 LKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSELNGKELMERPV 340 L FS + V + + DR +S G+GFV+F T+E +A+ +NGKEL R + Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNI 58
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 38.1 bits (87), Expect = 0.021 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +2 Query: 104 PSSPDTIVAKYKLYVSNLAWKARSADLKEFF-SQFNPVSANIVFDDR---KSAGYGFVSF 271 PS+P+ + L+V +L+ A ADL F ++F V V D S +GFV F Sbjct: 187 PSTPE-----FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRF 241 Query: 272 GTKEEAEAALSELNGK 319 G ++E AL E++GK Sbjct: 242 GDEDERRRALIEMSGK 257 Score = 36.2 bits (82), Expect = 0.081 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +2 Query: 101 PPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTK 280 P ++ +T ++V L K L+ F F P+ N+ + K+ G FV F + Sbjct: 349 PSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPI-LNVRIPNGKNCG--FVKFEKR 405 Query: 281 EEAEAALSELNGKELMERPVILRW-REDKETVKADGEVEG 397 +AEA++ L G + P+ L W R K + + G Sbjct: 406 IDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMG 445
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 37.7 bits (86), Expect = 0.028 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFD-DRKSAGYGFVSFGTKEEAEAALSELN 313 L+V NL K L E F Q PV I D D K + FV+F + A++ LN Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71 Query: 314 GKELMERPVILRWREDKETVKADGEV 391 G +L RP+ +++R D V Sbjct: 72 GIKLFGRPIKIQFRSGSSHASQDASV 97
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.7 bits (86), Expect = 0.028 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSE 307 K++V L+W DLK++F++F V I D +S G+GF+ F E L + Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 37.7 bits (86), Expect = 0.028 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR---KSAGYGFVSFGTKEEAEAALSE 307 KL+V L W L+ +FSQ+ V ++ D+ +S G+GFV F L+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 308 ----LNGKELMERPVILRWREDKETVKADG 385 L+G+ + +P R + + + +G Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREG 100
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++++ L AR D++ FF + + D G+GFV F +A+ A+ EL+G Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIR-----DIDLKRGFGFVEFEDPRDADDAVYELDG 59 Query: 317 KELMERPVIL 346 KEL V + Sbjct: 60 KELCSERVTI 69
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.4 bits (85), Expect = 0.037 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNP-VS 217 H ++GRV++ + + + P + T+ KL+V + + DL+++F Q+ VS Sbjct: 80 HKVDGRVVEPKRAVPRTEIGRPEAGATVK---KLFVGGIKEEMEENDLRDYFKQYGTVVS 136 Query: 218 ANIVFD--DRKSAGYGFVSF 271 A IV D RK G+ FV F Sbjct: 137 AAIVVDKETRKKRGFAFVEF 156
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++++ L AR D++ FF + + D G+GFV F +A+ A+ EL+G Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIR-----DIDLKRGFGFVEFEDPRDADDAVYELDG 59 Query: 317 KELMERPVIL 346 KEL V + Sbjct: 60 KELCSERVTI 69
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 37.4 bits (85), Expect = 0.037 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSE 307 L V L WK DLKE+FS F V V D K S G+GFV F E +S+ Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 164 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFG 274 P S D + K++V +L+EFFSQ+ V VF + + FV+F Sbjct: 178 PNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMD--VFIPKPFRAFAFVTFA 235 Query: 275 TKEEAEAALSE 307 + A++ E Sbjct: 236 DDQIAQSLCGE 246
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 ++++ L AR D++ FF + + D G+GFV F +A+ A+ EL+G Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIR-----DIDLKRGFGFVEFEDPRDADDAVYELDG 59 Query: 317 KELMERPVIL 346 KEL V + Sbjct: 60 KELCSERVTI 69
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 37.0 bits (84), Expect = 0.048 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 KL VSNL + AD++E F++F + V DR +S G V F + +A A+ + Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY 135 Query: 311 NGKELMERPV 340 G L RP+ Sbjct: 136 KGVPLDGRPM 145
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 37.0 bits (84), Expect = 0.048 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 15/121 (12%) Frame = +2 Query: 32 FDGHDINGRVIKVEFSKSFRKPAP----------PSSPDTIV--AKYKLYVSNLAWKARS 175 FDG G+ +K+ ++ P P P T+V + +KL++ L Sbjct: 214 FDGIIFQGQSLKIRRPHDYQ-PLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 272 Query: 176 ADLKEFFSQFNPVSA-NIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 +KE + F P+ A N+V D S GY F + + A++ LNG +L ++ +++ Sbjct: 273 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Query: 347 R 349 + Sbjct: 333 Q 333
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 37.0 bits (84), Expect = 0.048 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 15/121 (12%) Frame = +2 Query: 32 FDGHDINGRVIKVEFSKSFRKPAP----------PSSPDTIV--AKYKLYVSNLAWKARS 175 FDG G+ +K+ ++ P P P T+V + +KL++ L Sbjct: 214 FDGIIFQGQSLKIRRPHDYQ-PLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 272 Query: 176 ADLKEFFSQFNPVSA-NIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 346 +KE + F P+ A N+V D S GY F + + A++ LNG +L ++ +++ Sbjct: 273 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Query: 347 R 349 + Sbjct: 333 Q 333
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 37.0 bits (84), Expect = 0.048 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSA 220 H I+GRV++ + + + + P + T+ KL+V + L+++F ++ + Sbjct: 72 HSIDGRVVEPKRAVAREESGKPGAHVTVK---KLFVGGIKEDTEEHHLRDYFEEYGKIDT 128 Query: 221 NIVFDDRKSA---GYGFVSFGTKEEAEAALSE----LNGKELMERPVILR 349 + DR+S G+GFV+F + + + + +NG R + R Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 37.0 bits (84), Expect = 0.048 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSA 220 H I+GRV++ + + + + P + T+ KL+V + L+++F ++ + Sbjct: 84 HSIDGRVVEPKRAVAREESGKPGAHVTVK---KLFVGGIKEDTEEHHLRDYFEEYGKIDT 140 Query: 221 NIVFDDRKSA---GYGFVSFGTKEEAEAALSE----LNGKELMERPVILR 349 + DR+S G+GFV+F + + + + +NG R + R Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 37.0 bits (84), Expect = 0.048 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNP-VSANIVFDDR--KSAGYGFVSFGTKEEAEAALSE 307 K++V L+W DLK++F++F V I D +S G+GF+ F E L + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 37.0 bits (84), Expect = 0.048 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 28/136 (20%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKS--------------------------FRKPAPPS 109 +A + +GH ++G+ +++ SK F+KP + Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKN 469 Query: 110 SPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKE 283 + L++SN+ DLK FS V F DRK A + G+ E Sbjct: 470 FQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMA---LIQMGSVE 526 Query: 284 EAEAALSELNGKELME 331 EA AL EL+ +L E Sbjct: 527 EAVQALIELHNHDLGE 542
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 37.0 bits (84), Expect = 0.048 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARS--ADLKEFFSQFNPVSANIVF---DDRKSAGY 256 + + PS P++ + LYV NL + + L++ FS F + ++++ + S GY Sbjct: 368 RESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGY 427 Query: 257 GFVSFGTKEEAEAALSELNGKELMERPVILRWREDK 364 GFV+F E A A LNG + ++ + + + E K Sbjct: 428 GFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 37.0 bits (84), Expect = 0.048 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKV-------EFSKSFRKPAPPSSPDTIVAKYKLYVSNLAW 163 E + KFDG R + V E +K F K A D +++++ NL + Sbjct: 172 ESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDN---GFEVFIINLPY 228 Query: 164 KARSADLKEFFSQFNPV-SANIVFD-DRKSAGYGFVSFGTKEEAEAALSELNGKELMERP 337 LK+ F + V A++ D + S G+G V + T++E A+ NG E+ R Sbjct: 229 SMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRV 288 Query: 338 VILR 349 + +R Sbjct: 289 LEVR 292
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 36.6 bits (83), Expect = 0.062 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSFGTKEEAEAALSEL 310 L + NL+++ DL+ F ++ + + D R+S G+GFV F + +AE AL Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80 Query: 311 NGK 319 +GK Sbjct: 81 DGK 83
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 36.6 bits (83), Expect = 0.062 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFD--DRKSAGYGFVSFGTKEEAEAALSE 307 ++YV +++++ + ++ F+ F P+ S N+ +D +K G+ FV + E A+ AL + Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 308 LNG 316 +NG Sbjct: 191 MNG 193 Score = 33.9 bits (76), Expect = 0.40 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Frame = +2 Query: 5 EEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYK----LYVSNLAWKAR 172 E A +E+ +G + GR IKV + P D + + K +YV+++ Sbjct: 182 EGAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLS 239 Query: 173 SADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSELN 313 D+K F F P+ + GYGF+ + K+ + A++ +N Sbjct: 240 EEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 36.6 bits (83), Expect = 0.062 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQ---FNPVSANIVFDDRK-----SAGYGFVSFGTKEEAEA 295 L+V NL + S L + F F D +K S G+GFV+F TK++A+A Sbjct: 601 LFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQA 660 Query: 296 ALSELNGKEL 325 AL ++G+ L Sbjct: 661 ALKVMDGQVL 670
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 36.6 bits (83), Expect = 0.062 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSEL 310 L V+ L + +L F P++ + D K S GYGFV FG++ +A A++ L Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 311 NG 316 NG Sbjct: 140 NG 141
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 36.6 bits (83), Expect = 0.062 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L ++A D+ FFS NPV +I + D + G V F T E+A AA+S+ Sbjct: 290 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 346
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 36.6 bits (83), Expect = 0.062 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L ++A D+ FFS NPV +I + D + G V F T E+A AA+S+ Sbjct: 290 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 346
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 36.6 bits (83), Expect = 0.062 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = +2 Query: 107 SSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDD---RKSAGYGFVSF-- 271 S D K+++ L W +L+E+F ++ V+ + D +S G+GF+SF Sbjct: 150 SKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEK 209 Query: 272 -GTKEEAEAALSELNGKELMERPVILRWREDK 364 + +E L+GK + + I R +DK Sbjct: 210 PSSVDEVVKTQHILDGKVIDPKRAIPRDEQDK 241 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 137 KLYVSNLAWKARSADLKEFFSQFNP-VSANIVF--DDRKSAGYGFVSFGTKEEAE 292 K++V + R + +EFFSQ+ + A ++ D +S G+GFV++ + + + Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 36.6 bits (83), Expect = 0.062 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Frame = +2 Query: 47 INGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANI 226 I+G I ++ ++KP+ Y L++SN+ + D+K F ++N +SA + Sbjct: 54 ISGNPISLDVVPEWQKPS----------YYMLFISNIDPEVSENDIKYLFQRYNFISARV 103 Query: 227 V-FDDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILR-WREDKET 370 + D S F+ + + + A E+ G ++R +++ + DK T Sbjct: 104 LRCVDGTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKSDKNT 153
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 36.2 bits (82), Expect = 0.081 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRK--SAGYGFVSFGTKEEAEAALSEL 310 L V+NL A +E F + +V+ +R S GYGF + K+ A A S+L Sbjct: 134 LCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDL 193 Query: 311 NGKELMERPVILRWRE 358 GK L R + + W + Sbjct: 194 LGKPLGPRTLYVHWTD 209
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 36.2 bits (82), Expect = 0.081 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDRK--SAGYGFVSFGTKEEAEAALSEL 310 L V+NL A +E F + +V+ +R S GYGF + K+ A A S+L Sbjct: 134 LCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDL 193 Query: 311 NGKELMERPVILRWRE 358 GK L R + + W + Sbjct: 194 LGKPLGPRTLYVHWTD 209
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 36.2 bits (82), Expect = 0.081 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSE 307 L V L WK DLK++FS F V V D K S G+GFV F E +S+ Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 164 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFG 274 P SPD + K++V + +L++FF Q+ V VF + + FV+F Sbjct: 178 PNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVD--VFIPKPFRAFAFVTFA 235 Query: 275 TKEEAEAALSE 307 + A++ E Sbjct: 236 DDKVAQSLCGE 246
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 36.2 bits (82), Expect = 0.081 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA---GYGFVSFGTKEEAEAALSEL 310 +YV L K L E F Q PV + DR + GYGFV F ++E+A+ A+ + Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 311 NGKELMERPV 340 N +L +P+ Sbjct: 75 NMIKLYGKPI 84 Score = 35.8 bits (81), Expect = 0.11 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = +2 Query: 233 DDRKSAGYGFVSFGTKEEAEAALSELNGKELMERPVILRWREDKET 370 D S GY F++F + + ++AA+ +NG+ L RP+ + + K++ Sbjct: 137 DTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 L V NL+ + L+E FSQF P+ A ++ DDR +S G G V F +K A A + Sbjct: 365 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCS 424 Query: 314 GKELM----ERPVIL 346 + RPVI+ Sbjct: 425 EGVFLLTTTPRPVIV 439
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/79 (27%), Positives = 38/79 (48%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 ++L++ NL + ++LK+FF F V + K +GFV F E + LS Sbjct: 338 HQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLS--- 394 Query: 314 GKELMERPVILRWREDKET 370 + +M R + E+K+T Sbjct: 395 NRPIMFRGAVRLNVEEKKT 413
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR-KSAGYGFVSFGTKEEAEAALSELN 313 L V NL+ + L+E FSQF P+ A ++ DDR +S G G V F +K A A + Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCS 432 Query: 314 GKELM----ERPVIL 346 + RPVI+ Sbjct: 433 EGVFLLTTTPRPVIV 447
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.8 bits (81), Expect = 0.11 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFD-DRKSAGYGFVSFGTKEEAEAALSELN 313 L+V NL K L E F Q PV I D D K + FV+F + A++ LN Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 314 GKELMERPVILRWR 355 G +L RP+ +++R Sbjct: 72 GIKLFGRPIKIQFR 85
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPV-SANIVFD-DRKSAGYGFVSFGTKEEAEAALSELN 313 L+V NL K L E F Q PV I D D K + FV+F + A++ LN Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 314 GKELMERPVILRWREDKETVKAD 382 G +L RP+ +++R D Sbjct: 72 GIKLYGRPIKIQFRSGSSHAPQD 94
>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic| region Length = 668 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = +2 Query: 116 DTIVAKYKLYVSNLAWKARSADLKEFFSQFN---PVSANIVFDDRKSAGYGFVSFGTKEE 286 D V + + N+ + + L + + + P + N FD+ G F +F T EE Sbjct: 79 DDDVIPNAIVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHFDNGIFRGLAFANFTTPEE 138 Query: 287 AEAALSELNGKELMERPVILRWRE 358 ++ LNGKE+ R + + +++ Sbjct: 139 TTQVITSLNGKEISGRKLKVEYKK 162
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSA 220 H I+GRV++ + + + + A P + T+ KL+V + L+E+F ++ + + Sbjct: 72 HTIDGRVVEPKRAVAREESAKPGAHVTVK---KLFVGGIKEDTEEHHLREYFEEYGKIDS 128 Query: 221 NIVFDDRKSA---GYGFVSF 271 + D++S G+ FV+F Sbjct: 129 IEIITDKQSGKKRGFAFVTF 148
>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)| (hnRNP 2H9) Length = 346 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L ++A D+ FFS NP+ +I + D ++ G V F T E+A AA+S+ Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 253
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 35.8 bits (81), Expect = 0.11 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 28/136 (20%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKS--------------------------FRKPAPPS 109 +A + +GH ++G+ I++ SK F+KP + Sbjct: 386 QAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN 445 Query: 110 SPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKE 283 + L++SN+ DLK FS V F DRK A + G+ E Sbjct: 446 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA---LIQMGSVE 502 Query: 284 EAEAALSELNGKELME 331 EA AL +L+ +L E Sbjct: 503 EAVQALIDLHNHDLGE 518
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.8 bits (81), Expect = 0.11 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA--GYGFVSFGTKEEAEAALSELN 313 LY+SNL +L+ F V + V D A G GF + E+ EA + N Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFN 202 Query: 314 GKELMERPVILRWREDKETVKADG 385 GK + P + E ADG Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADG 226 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = +2 Query: 125 VAKYKLYVSNLAWKARSADLKEFFSQFNP-VSANIVFDD--RKSAGYGFVSFGTKEEAEA 295 ++K LY+ L DL + + VS + D K GYGFV F + A+ Sbjct: 59 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQK 118 Query: 296 ALSEL 310 A+S L Sbjct: 119 AVSAL 123
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFN------------PVSANIVFDDRKSAGYGFVSFGTKE 283 +++ NL +K S L + F F+ P N V S G+GFV F TKE Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVL----SMGFGFVEFRTKE 697 Query: 284 EAEAALSELNG 316 +A A +S ++G Sbjct: 698 QATAVISAMDG 708
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 35.4 bits (80), Expect = 0.14 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Frame = +2 Query: 77 SKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--DDRKSA 250 SK+F+ PPS+ L++SN+ DLK FS V F DRK A Sbjct: 439 SKNFQNIFPPSAT--------LHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMA 490 Query: 251 GYGFVSFGTKEEAEAALSELNGKELME 331 + G+ EEA AL EL+ +L E Sbjct: 491 ---LIQMGSVEEAVQALIELHNHDLGE 514
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 35.4 bits (80), Expect = 0.14 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA---GYGFVSFGTKEEAEAALSEL 310 +YV L K + L E Q PV + + DR +A G+GFV F +E+A+ A+ L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 311 NGKELMERPV 340 N +L +P+ Sbjct: 75 NMIKLYGKPI 84
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 35.0 bits (79), Expect = 0.18 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFF-SQFNPVS-ANIVFDD--RKSAGYGFVSFGTKEEAEAALSE 307 ++V +LA + L E F +++ S A IV D S GYGFV F +E + ALSE Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 308 LNGKELMERPV 340 + G L R + Sbjct: 225 MQGVFLNGRAI 235
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 35.0 bits (79), Expect = 0.18 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +2 Query: 95 PAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVS--ANIVFDDRKSAGYGFVS 268 PAPP+ + +++V +L+E F +F V + D +S GYGF++ Sbjct: 57 PAPPTYE---LIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFIT 113 Query: 269 FGTKEEAEAALSELNGKEL 325 F T+++AE + +L K+L Sbjct: 114 FETEDQAE-EIRKLTPKQL 131
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 35.0 bits (79), Expect = 0.18 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSEL 310 L++ +L + DL + F F V + VF D++ S +GFVS+ A+AA+ + Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 311 NGKELMERPVILRWREDKETVK 376 NG ++ + + ++ + K K Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 35.0 bits (79), Expect = 0.18 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK---SAGYGFVSFGTKEEAEAALSEL 310 L++ +L + DL + F F V + VF D++ S +GFVS+ A+AA+ + Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 311 NGKELMERPVILRWREDKETVK 376 NG ++ + + ++ + K K Sbjct: 463 NGFQIGMKRLKVQLKRSKNDSK 484
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 35.0 bits (79), Expect = 0.18 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVS-ANIVFDDR--KSAGYGFVSFGTKEEAEAALSEL 310 L V+NL +E F + +V+ +R +S GYGF + K+ A A S+L Sbjct: 134 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 193 Query: 311 NGKELMERPVILRWRE 358 GK L R + + W + Sbjct: 194 LGKPLGPRTLYVHWTD 209
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 35.0 bits (79), Expect = 0.18 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELN 313 LY+SNL +L+ F V + + D S G GF + E+ EA + N Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202 Query: 314 GKELMERPVILRWREDKETVKADG 385 GK + P + E ADG Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADG 226 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = +2 Query: 125 VAKYKLYVSNLAWKARSADLKEFFSQFNP-VSANIVFDD--RKSAGYGFVSFGTKEEAEA 295 ++K LY+ L DL + + VS + D K GYGFV F + A+ Sbjct: 59 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK 118 Query: 296 ALSEL 310 A+S L Sbjct: 119 AVSAL 123
>POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting protein 16)| (Zip16 protein) Length = 495 Score = 34.7 bits (78), Expect = 0.24 Identities = 20/88 (22%), Positives = 40/88 (45%) Frame = +2 Query: 92 KPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSF 271 KP + LYV N+ + ++ +K +F+ V ++ +++ A Y FV + Sbjct: 201 KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREKR-ARYAFVRY 259 Query: 272 GTKEEAEAALSELNGKELMERPVILRWR 355 + ++ A EL L R + +R+R Sbjct: 260 ASPDQTMEAFKELVDSPLNSRTLTVRYR 287
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +2 Query: 134 YKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 ++L++ NL + ++LK+FF + V + K +GFV F E + LS Sbjct: 340 HQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLS--- 396 Query: 314 GKELMERPVILRW--REDKETVKADGEVEGVKVDDQ 415 RP++ R R + E K EG + D++ Sbjct: 397 -----NRPIMFRGEVRLNVEEKKTRAAREGDRRDNR 427
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 34.7 bits (78), Expect = 0.24 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNP--VSANIVFDDRK------SAGYGFVSFGTKEEAEA 295 +++ NL + S L E F FN V+ D K S G+GF F TKE+A A Sbjct: 653 IFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANA 712 Query: 296 ALSELNG 316 +S + G Sbjct: 713 VISAMEG 719
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 34.7 bits (78), Expect = 0.24 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%) Frame = +2 Query: 35 DGHDINGRVIKVEFSKSFR-------------KPAPPSSPDTIVAKYKLYVSNLAWKARS 175 DG+D +G ++VEF +S R P P + ++Y++ VS L Sbjct: 74 DGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSW 133 Query: 176 ADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 DLK+ + V VF D G G V F KE+ A+ +L+ Sbjct: 134 QDLKDHMREAGDVCYADVFRD----GTGVVEFVRKEDMTYAVRKLD 175
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 34.7 bits (78), Expect = 0.24 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Frame = +2 Query: 71 EFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK-- 244 EF K ++ ++ LYV +L LK +F QF V V +K Sbjct: 24 EFQKKVQQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTG 83 Query: 245 -SAGYGFVSFGTKEEAEAALSELNGKELMER 334 S GYGFV F E A+ +N + ER Sbjct: 84 GSKGYGFVEFECDEVAKIVAETMNNYLMGER 114
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 34.7 bits (78), Expect = 0.24 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%) Frame = +2 Query: 35 DGHDINGRVIKVEFSKSFR-------------KPAPPSSPDTIVAKYKLYVSNLAWKARS 175 DG+D +G ++VEF +S R P P + ++Y++ VS L Sbjct: 74 DGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSW 133 Query: 176 ADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELN 313 DLK+ + V VF D G G V F KE+ A+ +L+ Sbjct: 134 QDLKDHMREAGDVCYADVFRD----GTGVVEFVRKEDMTYAVRKLD 175
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 34.7 bits (78), Expect = 0.24 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA--GYGFVSFGTKEEAEAALSELN 313 LY+SNL +L+ F V + + D A G GF + E+ EA ++ N Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFN 198 Query: 314 GKELMERP 337 GK + P Sbjct: 199 GKYIKTPP 206
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 34.3 bits (77), Expect = 0.31 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELN 313 LY+SNL +L+ F V + + D S G GF + E+ EA ++ N Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFN 196 Query: 314 GKELMERP 337 GK + P Sbjct: 197 GKYIKTPP 204 Score = 30.4 bits (67), Expect = 4.5 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 12/103 (11%) Frame = +2 Query: 38 GHDINGRVIKVEFSKSFRKPAPPSSPDTI---------VAKYKLYVSNLAWKARSADLKE 190 G++ N + V ++ P+P +S ++K LY+ L DL + Sbjct: 15 GYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVK 74 Query: 191 FFSQFNP-VSANIVFDD--RKSAGYGFVSFGTKEEAEAALSEL 310 + VS + D K GYGFV F + A+ A++ L Sbjct: 75 LCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 34.3 bits (77), Expect = 0.31 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 10/116 (8%) Frame = +2 Query: 32 FDGHDINGRVIKVEFSKSFR--------KPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 FDG + G+ +KV + ++ P S + + K+++ L +K Sbjct: 249 FDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMPVSTIVVDSANKIFIGGLPNYLTEDQVK 308 Query: 188 EFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELMERPVILR 349 E F P+ A + D + S GY F + + A++ LNG +L ++ ++++ Sbjct: 309 ELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQ 364
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L ++A D+ FFS NP+ +I + D + G V F T E+A AA+++ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANI-VFDDRKSAGYGFVSFGTKEEAEAALSE 307 +++ L ++A D+ FFS NP+ +I + D + G V F T E+A AA+++ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 34.3 bits (77), Expect = 0.31 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 10/116 (8%) Frame = +2 Query: 32 FDGHDINGRVIKVEFSKSFR--------KPAPPSSPDTIVAKYKLYVSNLAWKARSADLK 187 FDG + G+ +KV + ++ P S + + K+++ L +K Sbjct: 240 FDGINFMGQQLKVRRPRDYQPSQNTFDMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVK 299 Query: 188 EFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEEAEAALSELNGKELMERPVILR 349 E F P+ A + D + S GY F + + A++ LNG +L ++ ++++ Sbjct: 300 ELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQ 355
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 33.9 bits (76), Expect = 0.40 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +2 Query: 113 PDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEE 286 P+ + ++V + + A+++ +F Q+ V + DR S GYGFVSF + Sbjct: 29 PEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVD 88 Query: 287 AEAALS---ELNGKELMERPVI 343 + + ++GK L P I Sbjct: 89 VQKIVESQISVHGKRLKLGPAI 110
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSEL 310 +YVS L +L ++F+QF + + ++K+ YGF+ F KE+A A + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 311 NGKELM 328 N LM Sbjct: 153 NNYLLM 158
>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 557 Score = 33.9 bits (76), Expect = 0.40 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 28/136 (20%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKS--------------------------FRKPAPPS 109 +A + +GH ++G+ +++ SK F+KP + Sbjct: 412 QAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN 471 Query: 110 SPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKE 283 + L++SN+ DLK FS + F DRK A + G+ E Sbjct: 472 FQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMA---LIQMGSVE 528 Query: 284 EAEAALSELNGKELME 331 EA AL +L+ +L E Sbjct: 529 EAIQALIDLHNHDLGE 544
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.5 bits (75), Expect = 0.53 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Frame = +2 Query: 89 RKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK----SAGY 256 RK PS T K+++ L + E FS + + + DR S GY Sbjct: 128 RKRRSPSPRPT-----KVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGY 182 Query: 257 GFVSFGTKEEAEAAL-----SELNGKELMERPVILRW 352 +V F EEAE AL +++G+E+ V+ W Sbjct: 183 AYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTPW 219
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 33.5 bits (75), Expect = 0.53 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 28/136 (20%) Frame = +2 Query: 8 EAAAVVEKFDGHDINGRVIKVEFSKS--------------------------FRKPAPPS 109 +A + +GH ++G+ +++ SK F+KP + Sbjct: 386 QAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN 445 Query: 110 SPDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVF--DDRKSAGYGFVSFGTKE 283 + L++SN+ DLK FS + F DRK A + G+ E Sbjct: 446 FQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMA---LIQMGSVE 502 Query: 284 EAEAALSELNGKELME 331 EA AL +L+ +L E Sbjct: 503 EAIQALIDLHNHDLGE 518
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 33.5 bits (75), Expect = 0.53 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA---GYGFVSFGTKEEAEAALSEL 310 L+++ + + + L+ F + P+ ++ D++S GY F+ + + + AA Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163 Query: 311 NGKELMERPVIL 346 +GK++ + V++ Sbjct: 164 DGKKIDSKRVLV 175
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 33.1 bits (74), Expect = 0.69 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Frame = +2 Query: 41 HDINGRVIKVEFSKSFRKPAPPSSPDTIVAKYKLYVSNLAWKARSADLKEFFSQF-NPVS 217 H I+G+ VE ++ +P S I K KL+V L L+E+F QF N VS Sbjct: 95 HIIDGKT--VEAKRALPRPERESRETNISVK-KLFVGGLKDNHDEECLREYFLQFGNVVS 151 Query: 218 ANIVFDDR--KSAGYGFVSFGTKEEAEAAL 301 ++ D K G+ FV F + + A+ Sbjct: 152 VKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (RBP-MS)| (HEart, RRM Expressed Sequence) (Hermes) Length = 197 Score = 33.1 bits (74), Expect = 0.69 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 L+VS L + +L F F +++ K GFVSF ++ EAEAA + LNG Sbjct: 26 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP-VGFVSFDSRSEAEAAKNALNG 83
>RBPMS_HUMAN (Q93062) RNA-binding protein with multiple splicing (RBP-MS)| Length = 196 Score = 33.1 bits (74), Expect = 0.69 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = +2 Query: 140 LYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSAGYGFVSFGTKEEAEAALSELNG 316 L+VS L + +L F F +++ K GFVSF ++ EAEAA + LNG Sbjct: 26 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP-VGFVSFDSRSEAEAAKNALNG 83
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 33.1 bits (74), Expect = 0.69 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +2 Query: 146 VSNLAWKARSADLKEFFSQFNPVSANIVFDDRKSA---GYGFVSFGTKEEAEAALSELNG 316 V+NL + +L++ F + V + D+ + G+ FV+F ++++A A++ELN Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 317 KELMERPVILRW 352 + + + W Sbjct: 240 IRMYHMVLKVEW 251
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 33.1 bits (74), Expect = 0.69 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +2 Query: 245 SAGYGFVSFGTKEEAEAALSELNGKEL 325 S G+GFV F TKE+A A+S L+G L Sbjct: 662 SMGFGFVEFRTKEQANVAISTLDGHVL 688
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 32.7 bits (73), Expect = 0.90 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Frame = +2 Query: 113 PDTIVAKYKLYVSNLAWKARSADLKEFFSQFNPVSANIVFDDRK--SAGYGFVSFGTKEE 286 P+ + ++V + + +++ FF+++ V + DR S GYGFVSF + Sbjct: 33 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD 92 Query: 287 AEAAL-SELN--GKELMERPVI 343 + + S++N GK+L P I Sbjct: 93 VQKIVESQINFHGKKLKLGPAI 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,707,314 Number of Sequences: 219361 Number of extensions: 1419801 Number of successful extensions: 4796 Number of sequences better than 10.0: 305 Number of HSP's better than 10.0 without gapping: 4334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4687 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
