ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 137 5e-29
2gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome... 137 5e-29
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
4dbj|AK099899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 5e-29
5gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 48 0.033
6gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, c... 44 0.52
7dbj|AK094659.1| Homo sapiens cDNA FLJ37340 fis, clone BRAMY2020574 44 0.52
8ref|XM_959112.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.0
9ref|XM_330714.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.0
10ref|XM_510807.1| PREDICTED: Pan troglodytes similar to PRO0149 p... 40 8.1
11ref|XM_472267.1| Oryza sativa (japonica cultivar-group), predic... 40 8.1
12ref|NM_201405.1| Mus musculus butyrophilin-like 1 (Btnl1), mRNA 40 8.1
13ref|XM_953289.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.1
14gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, c... 40 8.1
15ref|XM_330779.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.1
16gb|AC134245.2| Mus musculus BAC clone RP23-144I22 from chromosom... 40 8.1
17gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.1
18gb|BC052925.1| Mus musculus butyrophilin-like 1, mRNA (cDNA clon... 40 8.1
19gb|AC124770.4| Mus musculus BAC clone RP23-8J2 from chromosome 1... 40 8.1
20gb|AC175206.2| Sporobolomyces roseus clone JGIBAIF-9K10, complet... 40 8.1
21emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 8.1
22ref|XM_852972.1| PREDICTED: Canis familiaris similar to pumilio ... 40 8.1
23ref|XM_852930.1| PREDICTED: Canis familiaris similar to pumilio ... 40 8.1
24ref|XM_852888.1| PREDICTED: Canis familiaris similar to pumilio ... 40 8.1
25ref|XM_852845.1| PREDICTED: Canis familiaris similar to pumilio ... 40 8.1
26ref|XM_843995.1| PREDICTED: Canis familiaris similar to pumilio ... 40 8.1
27gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosom... 40 8.1
28gb|AC122904.2| Mus musculus BAC clone RP23-46H15 from 1, complet... 40 8.1
29gb|AC124134.8| Mus musculus chromosome 12, clone RP23-235G12, co... 40 8.1
30gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 40 8.1
31gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosom... 40 8.1
32emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.1
33emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
34emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
35dbj|AK147617.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 8.1
36gb|AF052427.1|AF052427 Trypanosoma cruzi cosmid 2i15 NPK-1 prote... 40 8.1
37gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Canc... 40 8.1
38gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Canc... 40 8.1
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
40gb|AF533985.1| Streptomyces sp. EN27 plasmid pEN2701, complete s... 40 8.1
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
42gb|AC007041.3| Homo sapiens BAC clone RP11-327N17 from 2, comple... 40 8.1
43gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete... 40 8.1
44gb|AF242860.1|AF242860 Trypanosoma cruzi clone cosmid 1K19 NPK-1... 40 8.1
45gb|AC008243.6|AC008243 Homo sapiens, clone RP11-45L9, complete s... 40 8.1
46emb|BX323030.5| Zebrafish DNA sequence from clone DKEYP-77D7 in ... 40 8.1
47dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
48dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
49emb|AJ325820.1|HSA325820 Homo sapiens genomic sequence surroundi... 40 8.1
50gb|BT024105.1| Zea mays clone EL01N0520H10 mRNA sequence 40 8.1
51emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on ch... 40 8.1
52emb|CT485608.3| Mouse DNA sequence from clone RP23-427F9 on chro... 40 8.1
53gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility l... 40 8.1
54gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, comp... 40 8.1
55gb|AY068169.1| Schmidtea mediterranea clone H.14.9d unknown mRNA... 40 8.1
56gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosom... 40 8.1 
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                          
Query: 194    aggaggagggggaggagcatcggatgcgggcggcgctgcgccacctgcaggcggaggccg 253
              ||||||||| ||||||||  ||| |||||| |||||||||   |||||||  ||||||||
Sbjct: 151225 aggaggaggaggaggagcggcggctgcggggggcgctgcggagcctgcagcaggaggccg 151166

                                                                          
Query: 254    gagtgctcgagcgcctcgtctacaagcaccggaaccagcaccgcggtgccgcctacttcc 313
              | ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 151165 gggtgctggagcggctggtgtacaagcaccggaaccagcaccgcggcgccgcctacttcc 151106

                               
Query: 314    agtacctcatcaaggtg 330
              |||||||| ||||||||
Sbjct: 151105 agtacctcctcaaggtg 151089



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 514    cagatggctgaacctgttatgaagggagcagt 545
              |||||||||||||||||||||| |||||||||
Sbjct: 150339 cagatggctgaacctgttatgatgggagcagt 150308



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 439    aggcagggtaagaggaagcctggtgcaaatcatagccactataagagacttttggg 494
              |||||| |||||| ||||||||||||||| ||| | ||| || |||| ||||||||
Sbjct: 150853 aggcagagtaagaagaagcctggtgcaaaccattgtcaccatgagaggcttttggg 150798
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>gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
           OSJNBa0010B06, complete sequence
          Length = 129310

 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                       
Query: 194 aggaggagggggaggagcatcggatgcgggcggcgctgcgccacctgcaggcggaggccg 253
           ||||||||| ||||||||  ||| |||||| |||||||||   |||||||  ||||||||
Sbjct: 791 aggaggaggaggaggagcggcggctgcggggggcgctgcggagcctgcagcaggaggccg 732

                                                                       
Query: 254 gagtgctcgagcgcctcgtctacaagcaccggaaccagcaccgcggtgccgcctacttcc 313
           | ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 731 gggtgctggagcggctggtgtacaagcaccggaaccagcaccgcggcgccgcctacttcc 672

                            
Query: 314 agtacctcatcaaggtg 330
           |||||||| ||||||||
Sbjct: 671 agtacctcctcaaggtg 655



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 439 aggcagggtaagaggaagcctggtgcaaatcatagccactataagagacttttggg 494
           |||||| |||||| ||||||||||||||| ||| | ||| || |||| ||||||||
Sbjct: 419 aggcagagtaagaagaagcctggtgcaaaccattgtcaccatgagaggcttttggg 364
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                            
Query: 194      aggaggagggggaggagcatcggatgcgggcggcgctgcgccacctgcaggcggaggccg 253
                ||||||||| ||||||||  ||| |||||| |||||||||   |||||||  ||||||||
Sbjct: 19217575 aggaggaggaggaggagcggcggctgcggggggcgctgcggagcctgcagcaggaggccg 19217516

                                                                            
Query: 254      gagtgctcgagcgcctcgtctacaagcaccggaaccagcaccgcggtgccgcctacttcc 313
                | ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 19217515 gggtgctggagcggctggtgtacaagcaccggaaccagcaccgcggcgccgcctacttcc 19217456

                                 
Query: 314      agtacctcatcaaggtg 330
                |||||||| ||||||||
Sbjct: 19217455 agtacctcctcaaggtg 19217439



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 514      cagatggctgaacctgttatgaagggagcagt 545
                |||||||||||||||||||||| |||||||||
Sbjct: 19216689 cagatggctgaacctgttatgatgggagcagt 19216658



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 439      aggcagggtaagaggaagcctggtgcaaatcatagccactataagagacttttggg 494
                |||||| |||||| ||||||||||||||| ||| | ||| || |||| ||||||||
Sbjct: 19217203 aggcagagtaagaagaagcctggtgcaaaccattgtcaccatgagaggcttttggg 19217148
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>dbj|AK099899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B09, full
           insert sequence
          Length = 1693

 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                       
Query: 194 aggaggagggggaggagcatcggatgcgggcggcgctgcgccacctgcaggcggaggccg 253
           ||||||||| ||||||||  ||| |||||| |||||||||   |||||||  ||||||||
Sbjct: 105 aggaggaggaggaggagcggcggctgcggggggcgctgcggagcctgcagcaggaggccg 164

                                                                       
Query: 254 gagtgctcgagcgcctcgtctacaagcaccggaaccagcaccgcggtgccgcctacttcc 313
           | ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 165 gggtgctggagcggctggtgtacaagcaccggaaccagcaccgcggcgccgcctacttcc 224

                            
Query: 314 agtacctcatcaaggtg 330
           |||||||| ||||||||
Sbjct: 225 agtacctcctcaaggtg 241



 Score =  107 bits (54), Expect = 4e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                       
Query: 436 aacaggcagggtaagaggaagcctggtgcaaatcatagccactataagagacttttgggg 495
           ||||||||| |||||| ||||||||||||||| ||| | ||| || |||| |||||||| 
Sbjct: 347 aacaggcagagtaagaagaagcctggtgcaaaccattgtcaccatgagaggcttttgggt 406

                                                                       
Query: 496 attgcccgtttgctgtcccagatggctgaacctgttatgaagggagcagttcagatcagc 555
            | || || ||| | ||  ||||||||||||||||||||| ||||||||||||||||   
Sbjct: 407 gtcgcacgcttgttatcagagatggctgaacctgttatgatgggagcagttcagatctcg 466

                                                 
Query: 556 tttttacttgctagatcttttttcattgaactttgcac 593
           ||||||||||| ||||| |||||  |||| ||||||||
Sbjct: 467 tttttacttgcaagatcattttttgttgatctttgcac 504
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 223     gcggcgctgcgccacctgcaggcg 246
               ||||||||||||||||||||||||
Sbjct: 1278009 gcggcgctgcgccacctgcaggcg 1278032
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>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence
          Length = 182735

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 196   gaggagggggaggagcatcgga 217
             ||||||||||||||||||||||
Sbjct: 77768 gaggagggggaggagcatcgga 77747
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>dbj|AK094659.1| Homo sapiens cDNA FLJ37340 fis, clone BRAMY2020574
          Length = 2114

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 gaggagggggaggagcatcgga 217
           ||||||||||||||||||||||
Sbjct: 768 gaggagggggaggagcatcgga 747
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>ref|XM_959112.1| Neurospora crassa OR74A hypothetical protein (NCU03279.1) partial
            mRNA
          Length = 2274

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 194  aggaggagggggaggagcatc 214
            |||||||||||||||||||||
Sbjct: 1773 aggaggagggggaggagcatc 1793
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>ref|XM_330714.1| Neurospora crassa OR74A hypothetical protein (NCU03279.1) partial
            mRNA
          Length = 2274

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 194  aggaggagggggaggagcatc 214
            |||||||||||||||||||||
Sbjct: 1773 aggaggagggggaggagcatc 1793
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>ref|XM_510807.1| PREDICTED: Pan troglodytes similar to PRO0149 protein (LOC453908),
            mRNA
          Length = 2418

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  gaaggaggagggggaggagc 211
            ||||||||||||||||||||
Sbjct: 1020 gaaggaggagggggaggagc 1001
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>ref|XM_472267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  caagccggcggcggccgcct 71
           ||||||||||||||||||||
Sbjct: 753 caagccggcggcggccgcct 772
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>ref|NM_201405.1| Mus musculus butyrophilin-like 1 (Btnl1), mRNA
          Length = 3571

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 183  ggagggttcgaaggaggagggggaggag 210
            |||||| | |||||||||||||||||||
Sbjct: 2658 ggaggggtggaaggaggagggggaggag 2631
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>ref|XM_953289.1| Neurospora crassa OR74A hypothetical protein (NCU09858.1) partial
           mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 ggagggttcgaaggaggagg 202
           ||||||||||||||||||||
Sbjct: 297 ggagggttcgaaggaggagg 278
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>gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, complete sequence
          Length = 182777

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    ggaggagggggaggagcatc 214
              ||||||||||||||||||||
Sbjct: 134797 ggaggagggggaggagcatc 134816
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>ref|XM_330779.1| Neurospora crassa OR74A hypothetical protein (NCU09858.1) partial
           mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 ggagggttcgaaggaggagg 202
           ||||||||||||||||||||
Sbjct: 297 ggagggttcgaaggaggagg 278
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>gb|AC134245.2| Mus musculus BAC clone RP23-144I22 from chromosome 12, complete
             sequence
          Length = 213349

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   ggttcgaaggaggagggggaggag 210
             |||||| |||||||||||||||||
Sbjct: 59917 ggttcggaggaggagggggaggag 59894
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      tccggcactcggccagcagc 100
               ||||||||||||||||||||
Sbjct: 5783935 tccggcactcggccagcagc 5783916
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>gb|BC052925.1| Mus musculus butyrophilin-like 1, mRNA (cDNA clone MGC:56990
            IMAGE:6398253), complete cds
          Length = 3571

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 183  ggagggttcgaaggaggagggggaggag 210
            |||||| | |||||||||||||||||||
Sbjct: 2658 ggaggggtggaaggaggagggggaggag 2631
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>gb|AC124770.4| Mus musculus BAC clone RP23-8J2 from chromosome 18, complete sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ggaggagggggaggagcatc 214
              ||||||||||||||||||||
Sbjct: 193341 ggaggagggggaggagcatc 193322
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>gb|AC175206.2| Sporobolomyces roseus clone JGIBAIF-9K10, complete sequence
          Length = 33691

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  gaaggaggagggggaggagc 211
            ||||||||||||||||||||
Sbjct: 7381 gaaggaggagggggaggagc 7362
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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    gggattgcccgtttgctgtc 512
              ||||||||||||||||||||
Sbjct: 196942 gggattgcccgtttgctgtc 196961
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>ref|XM_852972.1| PREDICTED: Canis familiaris similar to pumilio homolog 2,
           transcript variant 6 (LOC607618), mRNA
          Length = 6351

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 72  ggttcggaggaggagggggaggag 95
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>ref|XM_852930.1| PREDICTED: Canis familiaris similar to pumilio homolog 2,
           transcript variant 5 (LOC607618), mRNA
          Length = 6108

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 72  ggttcggaggaggagggggaggag 95
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>ref|XM_852888.1| PREDICTED: Canis familiaris similar to pumilio homolog 2,
           transcript variant 4 (LOC607618), mRNA
          Length = 6330

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 72  ggttcggaggaggagggggaggag 95
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>ref|XM_852845.1| PREDICTED: Canis familiaris similar to pumilio homolog 2,
           transcript variant 3 (LOC607618), mRNA
          Length = 6357

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 72  ggttcggaggaggagggggaggag 95
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>ref|XM_843995.1| PREDICTED: Canis familiaris similar to pumilio homolog 2,
           transcript variant 1 (LOC607618), mRNA
          Length = 6366

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 72  ggttcggaggaggagggggaggag 95
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>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete
             sequence
          Length = 170164

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   ggttcgaaggaggagggggaggag 210
             |||||| |||||||||||||||||
Sbjct: 74133 ggttcggaggaggagggggaggag 74156
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>gb|AC122904.2| Mus musculus BAC clone RP23-46H15 from 1, complete sequence
          Length = 139848

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 183    ggagggttcgaaggaggagggggaggag 210
              |||||| | |||||||||||||||||||
Sbjct: 119654 ggaggggtagaaggaggagggggaggag 119681
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>gb|AC124134.8| Mus musculus chromosome 12, clone RP23-235G12, complete sequence
          Length = 220574

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    acaggcagggtaagaggaag 456
              ||||||||||||||||||||
Sbjct: 104786 acaggcagggtaagaggaag 104805
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>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 183    ggagggttcgaaggaggagggggaggag 210
              |||||| | |||||||||||||||||||
Sbjct: 194939 ggaggggtagaaggaggagggggaggag 194912
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>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete
            sequence
          Length = 205985

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  ggttcgaaggaggagggggaggag 210
            |||||| |||||||||||||||||
Sbjct: 3010 ggttcggaggaggagggggaggag 3033
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctgccaagccggcggcggcc 67
             ||||||||||||||||||||
Sbjct: 57970 ctgccaagccggcggcggcc 57989
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
              complete sequence
          Length = 143093

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     caagccggcggcggccgcct 71
              ||||||||||||||||||||
Sbjct: 132938 caagccggcggcggccgcct 132919
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
            complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   caagccggcggcggccgcct 71
            ||||||||||||||||||||
Sbjct: 8950 caagccggcggcggccgcct 8931
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>dbj|AK147617.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
           full-length enriched library, clone:M5C1092I08
           product:pumilio 2 (Drosophila), full insert sequence
          Length = 6220

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 26  ggttcggaggaggagggggaggag 49
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>gb|AF052427.1|AF052427 Trypanosoma cruzi cosmid 2i15 NPK-1 protein kinase homolog gene,
             complete cds; and unknown genes
          Length = 13068

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gaaggaggagggggaggagc 211
             ||||||||||||||||||||
Sbjct: 11501 gaaggaggagggggaggagc 11520
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>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208992

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    ctacttccagtacctcatca 325
              ||||||||||||||||||||
Sbjct: 135625 ctacttccagtacctcatca 135606
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>gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 212483

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    ctacttccagtacctcatca 325
              ||||||||||||||||||||
Sbjct: 174234 ctacttccagtacctcatca 174253
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 52       caagccggcggcggccgcct 71
                ||||||||||||||||||||
Sbjct: 18917028 caagccggcggcggccgcct 18917009
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>gb|AF533985.1| Streptomyces sp. EN27 plasmid pEN2701, complete sequence
          Length = 12855

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  cgaaggaggagggggaggag 210
            ||||||||||||||||||||
Sbjct: 1497 cgaaggaggagggggaggag 1478
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gccggcggcggccgcctggt 74
              ||||||||||||||||||||
Sbjct: 222493 gccggcggcggccgcctggt 222512
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>gb|AC007041.3| Homo sapiens BAC clone RP11-327N17 from 2, complete sequence
          Length = 173397

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    ggttcgaaggaggagggggaggag 210
              |||||| |||||||||||||||||
Sbjct: 114423 ggttcggaggaggagggggaggag 114400
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>gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete sequence
          Length = 197328

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   tcagctttttacttgctaga 570
             ||||||||||||||||||||
Sbjct: 30574 tcagctttttacttgctaga 30593
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>gb|AF242860.1|AF242860 Trypanosoma cruzi clone cosmid 1K19 NPK-1 protein kinase-like protein
             gene, complete cds; and unknown genes
          Length = 39465

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gaaggaggagggggaggagc 211
             ||||||||||||||||||||
Sbjct: 14250 gaaggaggagggggaggagc 14269
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>gb|AC008243.6|AC008243 Homo sapiens, clone RP11-45L9, complete sequence
          Length = 161509

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   aggaggagggggaggagcat 213
             ||||||||||||||||||||
Sbjct: 66521 aggaggagggggaggagcat 66540
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>emb|BX323030.5| Zebrafish DNA sequence from clone DKEYP-77D7 in linkage group 1,
             complete sequence
          Length = 181363

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aaggaggagggggaggagca 212
             ||||||||||||||||||||
Sbjct: 80936 aaggaggagggggaggagca 80955
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>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C06
          Length = 110989

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    gccggcggcggccgcctggt 74
             ||||||||||||||||||||
Sbjct: 32468 gccggcggcggccgcctggt 32487
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>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             clone:OJA1212_C06
          Length = 113554

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    gccggcggcggccgcctggt 74
             ||||||||||||||||||||
Sbjct: 35033 gccggcggcggccgcctggt 35052
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>emb|AJ325820.1|HSA325820 Homo sapiens genomic sequence surrounding NotI site, clone NB1-806C
          Length = 1099

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 ggttcgaaggaggagggggaggag 210
           |||||| |||||||||||||||||
Sbjct: 170 ggttcggaggaggagggggaggag 147
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>gb|BT024105.1| Zea mays clone EL01N0520H10 mRNA sequence
          Length = 1674

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 257 tgctcgagcgcctcgtctacaagc 280
           ||||||| ||||||||||||||||
Sbjct: 475 tgctcgaccgcctcgtctacaagc 498
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>emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on chromosome 17, complete
             sequence
          Length = 124639

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 183   ggagggttcgaaggaggagggggaggag 210
             |||||| | |||||||||||||||||||
Sbjct: 65194 ggaggggtggaaggaggagggggaggag 65167
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>emb|CT485608.3| Mouse DNA sequence from clone RP23-427F9 on chromosome 14, complete
              sequence
          Length = 182099

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 530    ttatgaagggagcagttcag 549
              ||||||||||||||||||||
Sbjct: 150307 ttatgaagggagcagttcag 150288
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>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major
              histocompatibility protein class II alpha chain (IAalpha)
              and major histocompatibility protein class II beta chain
              (IEbeta) genes, complete cds; butyrophilin-like (NG9),
              butyrophilin-like (NG10), hypothetical protein (NG8), and
              butyrophilin-like (NG11) genes, partial cds; NG12
              pseudogene, partial sequence; and hypothetical
              butyrophilin-like protein (NG13) gene, partial cds
          Length = 245439

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 183    ggagggttcgaaggaggagggggaggag 210
              |||||| | |||||||||||||||||||
Sbjct: 106362 ggaggggtggaaggaggagggggaggag 106335
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>gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, complete sequence
          Length = 250028

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    aaggaggagggggaggagca 212
              ||||||||||||||||||||
Sbjct: 144759 aaggaggagggggaggagca 144740
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>gb|AY068169.1| Schmidtea mediterranea clone H.14.9d unknown mRNA sequence
          Length = 685

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 571 tcttttttcattgaactttg 590
           ||||||||||||||||||||
Sbjct: 228 tcttttttcattgaactttg 247
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>gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosome 9, complete
            sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  aggaggagggggaggagcat 213
            ||||||||||||||||||||
Sbjct: 8164 aggaggagggggaggagcat 8145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,442,206
Number of Sequences: 3902068
Number of extensions: 4442206
Number of successful extensions: 124958
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124556
Number of HSP's gapped (non-prelim): 402
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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