ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24l04 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 71.2 bits (173), Expect = 7e-13 Identities = 32/40 (80%), Positives = 37/40 (92%) Frame = +3 Query: 24 KDTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 +DTKI+NAA FT+EREDHTIGNI+RMQLHRD NV FAGY+ Sbjct: 23 RDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQ 62
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 61.6 bits (148), Expect = 6e-10 Identities = 27/39 (69%), Positives = 33/39 (84%) Frame = +3 Query: 27 DTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAGYK Sbjct: 24 DTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYK 62
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 61.6 bits (148), Expect = 6e-10 Identities = 27/40 (67%), Positives = 34/40 (85%) Frame = +3 Query: 24 KDTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 KDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAGYK Sbjct: 22 KDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYK 61
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 60.8 bits (146), Expect = 1e-09 Identities = 27/40 (67%), Positives = 34/40 (85%) Frame = +3 Query: 24 KDTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 KDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAGYK Sbjct: 22 KDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYK 61
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 60.1 bits (144), Expect = 2e-09 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = +3 Query: 21 SKDTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 +KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAGYK Sbjct: 22 NKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYK 62
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 60.1 bits (144), Expect = 2e-09 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = +3 Query: 21 SKDTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 +KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAGYK Sbjct: 22 NKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYK 62
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 58.5 bits (140), Expect = 5e-09 Identities = 25/39 (64%), Positives = 32/39 (82%) Frame = +3 Query: 27 DTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAGYK Sbjct: 24 DMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYK 62
>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC| 2.7.7.6) (B13.6) Length = 120 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = +3 Query: 27 DTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 DTK NA T E+EDHT+GN++R +L D V FA YK Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYK 62
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/39 (56%), Positives = 27/39 (69%) Frame = +3 Query: 27 DTKIMNAACFTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 D+K NAA T+E+EDHT+ N+L QL D V FAGYK Sbjct: 23 DSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYK 61
>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 41.6 bits (96), Expect = 6e-04 Identities = 17/30 (56%), Positives = 24/30 (80%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 F I+ EDHTIGN++++QL +DP V FA Y+ Sbjct: 38 FVIKLEDHTIGNLIKIQLCQDPKVLFAAYR 67
>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 41.6 bits (96), Expect = 6e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 FTI+ EDHTIGN+++ L +DP V FA Y+ Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYR 67
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 41.6 bits (96), Expect = 6e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGYK 143 FTI+ EDHTIGN+++ L +DP V FA Y+ Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYR 67
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 39.3 bits (90), Expect = 0.003 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +3 Query: 39 MNAACFTIEREDHTIGNILRMQLHRDPNVHFAGY 140 + + F I++EDHT+GN LR + ++P V F GY Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGY 65
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 38.5 bits (88), Expect = 0.005 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 45 AACFTIEREDHTIGNILRMQLHRDPNVHFAGY 140 +A F I EDHT+GN LR + ++P+V F GY Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGY 91
>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 37.4 bits (85), Expect = 0.011 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F + EDHT+GN LR + ++P V F GY Sbjct: 42 FVLHEEDHTLGNSLRYMIMKNPEVEFCGY 70
>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 114 Score = 37.0 bits (84), Expect = 0.015 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F + EDHT+GN LR + ++P V F GY Sbjct: 26 FVLHEEDHTLGNSLRYMVMKNPEVEFCGY 54
>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 36.6 bits (83), Expect = 0.020 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F + EDHT+GN LR + ++P V F GY Sbjct: 42 FVLHEEDHTLGNCLRYIIMKNPEVEFCGY 70
>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 94 Score = 35.0 bits (79), Expect = 0.057 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F +E EDHT N+L LH + +V FAGY Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGY 43
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 34.3 bits (77), Expect = 0.097 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F + EDHT+GN LR + + +V F GY Sbjct: 25 FVLNEEDHTLGNSLRYMIMKSQDVEFCGY 53
>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 33.1 bits (74), Expect = 0.22 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F +E EDHT N+L L DP+V F Y Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAY 43
>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 90 Score = 32.3 bits (72), Expect = 0.37 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +3 Query: 60 IEREDHTIGNILRMQLHRDPNVHFAGY 140 I+ E+HTIGN+L+ L + P V FA Y Sbjct: 17 IDGEEHTIGNLLKGMLLKVPGVKFAAY 43
>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 93 Score = 31.6 bits (70), Expect = 0.63 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 60 IEREDHTIGNILRMQLHRDPNVHFAGY 140 I+ E+HT+GN+L+ L + P V FA Y Sbjct: 17 IDGEEHTVGNLLKGYLLKVPGVKFASY 43
>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 31.6 bits (70), Expect = 0.63 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F +E EDHT N+L L +P+V F Y Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFVAY 43
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 31.2 bits (69), Expect = 0.82 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 60 IEREDHTIGNILRMQLHRDPNVHFAGY 140 IE EDHT+GN++ L R V FA Y Sbjct: 17 IEGEDHTLGNLIAGTLRRISGVSFASY 43
>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 105 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F E HT+GN L+ + R P V F GY Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGY 48
>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 54 FTIEREDHTIGNILRMQLHRDPNVHFAGY 140 F +E EDHT N+L L +P+V F Y Sbjct: 15 FYLEGEDHTFANLLVETLRENPHVKFTAY 43
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 30.4 bits (67), Expect = 1.4 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%) Frame = +3 Query: 15 PSSKDTKIMNAACFTIE---------REDHTIGNILRMQLHRDPNVHFAGY 140 PS K +I++ F + EDHTIGN ++ L R V F GY Sbjct: 41 PSKKKMEILDPKSFEQDPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGY 91
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 29.3 bits (64), Expect = 3.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 69 EDHTIGNILRMQLHRDPNVHFAGY 140 EDHTIGN ++ L R V F GY Sbjct: 69 EDHTIGNSIKHILSRMDEVEFCGY 92
>MS84A_DROME (Q01642) Male-specific sperm protein Mst84Da| Length = 63 Score = 27.7 bits (60), Expect = 9.1 Identities = 9/15 (60%), Positives = 9/15 (60%) Frame = -2 Query: 117 GPCATACGGCCRWCG 73 GPC CG CC CG Sbjct: 30 GPCCGGCGPCCGPCG 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,355,441 Number of Sequences: 219361 Number of extensions: 265866 Number of successful extensions: 1110 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1001 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1103 length of database: 80,573,946 effective HSP length: 23 effective length of database: 75,528,643 effective search space used: 1812687432 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
