Clone Information

BLAST Search Result

Clone Name	bags24k17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_190777.1\| Oryza sativa (japonica cultivar-group), predic...	436	e-119
2	dbj\|AK121602.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	436	e-119
3	dbj\|AK068777.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	436	e-119
4	emb\|AJ234880.1\|HVU234880 Hordeum vulgare genomic DNA fragment; c...	289	5e-75
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	230	4e-57
6	dbj\|AP003286.3\| Oryza sativa (japonica cultivar-group) genomic D...	230	4e-57
7	gb\|AC124404.4\| Mus musculus BAC clone RP24-371M10 from chromosom...	46	0.14
8	gb\|AC103770.5\| Homo sapiens chromosome 8, clone RP11-122A3, comp...	46	0.14
9	gb\|AC093329.6\| Homo sapiens chromosome 8, clone RP11-662G23, com...	46	0.14
10	gb\|AC068510.8\| Homo sapiens chromosome 8, clone RP11-662E23, com...	46	0.14
11	dbj\|AK164851.1\| Mus musculus 15 days embryo head cDNA, RIKEN ful...	46	0.14
12	gb\|AC153654.4\| Mus musculus BAC clone RP23-457N11 from chromosom...	46	0.14
13	gb\|AE014836.1\| Plasmodium falciparum 3D7 chromosome 11 section 1...	44	0.53
14	emb\|Z69369.1\|SPAC3F10 S.pombe chromosome I cosmid c3F10	44	0.53
15	gb\|AC021657.19\| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Can...	44	0.53
16	emb\|AL158813.16\| Human DNA sequence from clone RP11-29C12 on chr...	42	2.1
17	gb\|AC092489.4\| Oryza sativa chromosome 10 BAC OSJNBa0066I08 geno...	42	2.1
18	emb\|Y19207.1\|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair ...	42	2.1
19	emb\|AL604027.9\| Mouse DNA sequence from clone RP23-155G20 on chr...	42	2.1
20	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
21	gb\|AC078865.22\| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Can...	42	2.1
22	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
23	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	8.3
24	emb\|CT009607.7\| Mouse DNA sequence from clone RP23-134I10 on chr...	40	8.3
25	ref\|XM_808461.1\| Trypanosoma cruzi strain CL Brener zinc-binding...	40	8.3
26	ref\|XM_813907.1\| Trypanosoma cruzi strain CL Brener zinc-binding...	40	8.3
27	emb\|AL391988.14\| Human DNA sequence from clone RP11-129M16 on ch...	40	8.3
28	emb\|AL392173.8\| Human DNA sequence from clone RP11-158M9 on chro...	40	8.3
29	emb\|AL390961.17\| Human DNA sequence from clone RP13-16H11 on chr...	40	8.3
30	emb\|AL365501.11\| Human DNA sequence from clone RP13-27G4 on chro...	40	8.3
31	emb\|AL049745.9\|HSJ654H19 Human DNA sequence from clone RP4-654H1...	40	8.3
32	emb\|AL034345.3\|HS207H1 Human DNA sequence from clone RP1-207H1 o...	40	8.3
33	gb\|AC130886.3\| Homo sapiens X BAC RP11-361B16 (Roswell Park Canc...	40	8.3
34	gb\|CP000077.1\| Sulfolobus acidocaldarius DSM 639, complete genome	40	8.3
35	gb\|AC022402.5\| Homo sapiens chromosome 06 clone RP11-70I3, compl...	40	8.3
36	gb\|AC096566.2\| Homo sapiens BAC clone RP11-292B1 from 4, complet...	40	8.3
37	gb\|AE016816.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.3
38	gb\|AC007677.3\| Homo sapiens BAC clone RP11-86N1 from 2, complete...	40	8.3
39	ref\|NM_208684.1\| Eremothecium gossypii ACL073Wp (ACL073W), mRNA	40	8.3
40	gb\|AC005880.3\|AC005880 citb_43_a_11, complete sequence	40	8.3
41	emb\|BX323877.4\| Zebrafish DNA sequence from clone DKEYP-96F6 in ...	40	8.3
42	emb\|CT486003.10\| Mouse DNA sequence from clone RP23-415F11 on ch...	40	8.3
43	emb\|CT573032.5\| Mouse DNA sequence from clone RP24-315C3 on chro...	40	8.3
44	gb\|AC151272.2\| Mus musculus BAC clone RP24-208G22 from 17, compl...	40	8.3
45	dbj\|AP006091.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	8.3
46	emb\|AL672096.4\| Mouse DNA sequence from clone RP23-293N20 on chr...	40	8.3
47	emb\|AL672067.5\| Mouse DNA sequence from clone RP23-5P1 on chromo...	40	8.3
48	gb\|AC155345.1\| Brassica rapa subsp. pekinensis chromosome Cytoge...	40	8.3
49	emb\|AL808117.6\| Mouse DNA sequence from clone RP23-240N3 on chro...	40	8.3

>ref|NM_190777.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2286

 Score =  436 bits (220), Expect = e-119
 Identities = 445/520 (85%)
 Strand = Plus / Plus

                                                                        
Query: 94   ttttcgacatagacggtagtgtgtacttaggcaagtggatgacgtctccaagctgggcat 153
            |||| |||||||| |||||||| |||||  ||||||||||||| ||||| || ||| |||
Sbjct: 1322 tttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacat 1381

                                                                        
Query: 154  caagccattcagtcagtttttggaaaggctcttcagtcaagcatggtgtaatattaagta 213
            | ||||| || | ||  ||||||| |  ||| ||||| ||||||||||||||||| || |
Sbjct: 1382 ccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagca 1441

                                                                        
Query: 214  aatccttagttgtagctgataaaaatcttgtagagaaggcgatggttgtctgtaaggaga 273
            |||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 1442 aatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagaga 1501

                                                                        
Query: 274  agagcaaagtagttgacaagacacatgctacaattgttgctgctacagtcgaaggtattc 333
            |||||||| ||||||| | |||||| || ||||||||||| |||||  | ||||||||||
Sbjct: 1502 agagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattc 1561

                                                                        
Query: 334  caagcaatattgacctcttcaaggaacttgtacttcccttcgcaataatggctgaaaaat 393
            ||||||| ||||||||||||||||| ||| ||||||| || |||||| ||  ||||||||
Sbjct: 1562 caagcaacattgacctcttcaaggagcttatacttccttttgcaatagtgagtgaaaaat 1621

                                                                        
Query: 394  tcaacaaacttaaacgctgggagaatccccgttcaaccatttgttttctactgttagttt 453
            || |||| || ||||||||||| ||| | ||| |||||  ||||||||||||  | ||||
Sbjct: 1622 tctacaagctcaaacgctgggaaaattctcgtacaaccgcttgttttctacttgtggttt 1681

                                                                        
Query: 454  atactgttattttcaggaacatgctcttttatatatttccatttaccttgatggcgatgg 513
            ||||| |||| |||||||||||||| | |||| |  |||||||| ||||||||  | |||
Sbjct: 1682 atactattatcttcaggaacatgctttcttatgttcttccattttccttgatgatgttgg 1741

                                                                        
Query: 514  ccctttccatgcttgccctgaaagggctgagagaacaaggtcggctgggtaggtcttttg 573
            | |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct: 1742 ctctttccatgcttgccctgaaagggctgaaagaacaaggtcggttgggtagatcttttg 1801

                                                    
Query: 574  gcaaagtgacaatacgggatcaaccaccttccaacacaat 613
            ||||||||||||||   |||||||||||||| ||||||||
Sbjct: 1802 gcaaagtgacaataaaagatcaaccaccttcaaacacaat 1841

to top

>dbj|AK121602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041A14, full
            insert sequence
          Length = 2731

 Score =  436 bits (220), Expect = e-119
 Identities = 445/520 (85%)
 Strand = Plus / Plus

                                                                        
Query: 94   ttttcgacatagacggtagtgtgtacttaggcaagtggatgacgtctccaagctgggcat 153
            |||| |||||||| |||||||| |||||  ||||||||||||| ||||| || ||| |||
Sbjct: 1716 tttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacat 1775

                                                                        
Query: 154  caagccattcagtcagtttttggaaaggctcttcagtcaagcatggtgtaatattaagta 213
            | ||||| || | ||  ||||||| |  ||| ||||| ||||||||||||||||| || |
Sbjct: 1776 ccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagca 1835

                                                                        
Query: 214  aatccttagttgtagctgataaaaatcttgtagagaaggcgatggttgtctgtaaggaga 273
            |||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 1836 aatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagaga 1895

                                                                        
Query: 274  agagcaaagtagttgacaagacacatgctacaattgttgctgctacagtcgaaggtattc 333
            |||||||| ||||||| | |||||| || ||||||||||| |||||  | ||||||||||
Sbjct: 1896 agagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattc 1955

                                                                        
Query: 334  caagcaatattgacctcttcaaggaacttgtacttcccttcgcaataatggctgaaaaat 393
            ||||||| ||||||||||||||||| ||| ||||||| || |||||| ||  ||||||||
Sbjct: 1956 caagcaacattgacctcttcaaggagcttatacttccttttgcaatagtgagtgaaaaat 2015

                                                                        
Query: 394  tcaacaaacttaaacgctgggagaatccccgttcaaccatttgttttctactgttagttt 453
            || |||| || ||||||||||| ||| | ||| |||||  ||||||||||||  | ||||
Sbjct: 2016 tctacaagctcaaacgctgggaaaattctcgtacaaccgcttgttttctacttgtggttt 2075

                                                                        
Query: 454  atactgttattttcaggaacatgctcttttatatatttccatttaccttgatggcgatgg 513
            ||||| |||| |||||||||||||| | |||| |  |||||||| ||||||||  | |||
Sbjct: 2076 atactattatcttcaggaacatgctttcttatgttcttccattttccttgatgatgttgg 2135

                                                                        
Query: 514  ccctttccatgcttgccctgaaagggctgagagaacaaggtcggctgggtaggtcttttg 573
            | |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct: 2136 ctctttccatgcttgccctgaaagggctgaaagaacaaggtcggttgggtagatcttttg 2195

                                                    
Query: 574  gcaaagtgacaatacgggatcaaccaccttccaacacaat 613
            ||||||||||||||   |||||||||||||| ||||||||
Sbjct: 2196 gcaaagtgacaataaaagatcaaccaccttcaaacacaat 2235

to top

>dbj|AK068777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159O06, full
            insert sequence
          Length = 2135

 Score =  436 bits (220), Expect = e-119
 Identities = 445/520 (85%)
 Strand = Plus / Plus

                                                                        
Query: 94   ttttcgacatagacggtagtgtgtacttaggcaagtggatgacgtctccaagctgggcat 153
            |||| |||||||| |||||||| |||||  ||||||||||||| ||||| || ||| |||
Sbjct: 1090 tttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacat 1149

                                                                        
Query: 154  caagccattcagtcagtttttggaaaggctcttcagtcaagcatggtgtaatattaagta 213
            | ||||| || | ||  ||||||| |  ||| ||||| ||||||||||||||||| || |
Sbjct: 1150 ccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagca 1209

                                                                        
Query: 214  aatccttagttgtagctgataaaaatcttgtagagaaggcgatggttgtctgtaaggaga 273
            |||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 1210 aatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagaga 1269

                                                                        
Query: 274  agagcaaagtagttgacaagacacatgctacaattgttgctgctacagtcgaaggtattc 333
            |||||||| ||||||| | |||||| || ||||||||||| |||||  | ||||||||||
Sbjct: 1270 agagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattc 1329

                                                                        
Query: 334  caagcaatattgacctcttcaaggaacttgtacttcccttcgcaataatggctgaaaaat 393
            ||||||| ||||||||||||||||| ||| ||||||| || |||||| ||  ||||||||
Sbjct: 1330 caagcaacattgacctcttcaaggagcttatacttccttttgcaatagtgagtgaaaaat 1389

                                                                        
Query: 394  tcaacaaacttaaacgctgggagaatccccgttcaaccatttgttttctactgttagttt 453
            || |||| || ||||||||||| ||| | ||| |||||  ||||||||||||  | ||||
Sbjct: 1390 tctacaagctcaaacgctgggaaaattctcgtacaaccgcttgttttctacttgtggttt 1449

                                                                        
Query: 454  atactgttattttcaggaacatgctcttttatatatttccatttaccttgatggcgatgg 513
            ||||| |||| |||||||||||||| | |||| |  |||||||| ||||||||  | |||
Sbjct: 1450 atactattatcttcaggaacatgctttcttatgttcttccattttccttgatgatgttgg 1509

                                                                        
Query: 514  ccctttccatgcttgccctgaaagggctgagagaacaaggtcggctgggtaggtcttttg 573
            | |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct: 1510 ctctttccatgcttgccctgaaagggctgaaagaacaaggtcggttgggtagatcttttg 1569

                                                    
Query: 574  gcaaagtgacaatacgggatcaaccaccttccaacacaat 613
            ||||||||||||||   |||||||||||||| ||||||||
Sbjct: 1570 gcaaagtgacaataaaagatcaaccaccttcaaacacaat 1609

to top

>emb|AJ234880.1|HVU234880 Hordeum vulgare genomic DNA fragment; clone MWG2290
          Length = 408

 Score =  289 bits (146), Expect = 5e-75
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 468 aggaacatgctcttttatatatttccatttaccttgatggcgatggccctttccatgctt 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aggaacatgctcttttatatatttccatttaccttgatggcgatggccctttccatgctt 273

                                                                       
Query: 528 gccctgaaagggctgagagaacaaggtcggctgggtaggtcttttggcaaagtgacaata 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gccctgaaagggctgagagaacaaggtcggctgggtaggtcttttggcaaagtgacaata 333

                                     
Query: 588 cgggatcaaccaccttccaacacaat 613
           ||||||||||||||||||||||||||
Sbjct: 334 cgggatcaaccaccttccaacacaat 359

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  230 bits (116), Expect = 4e-57
 Identities = 227/264 (85%)
 Strand = Plus / Minus

                                                                            
Query: 94       ttttcgacatagacggtagtgtgtacttaggcaagtggatgacgtctccaagctgggcat 153
                |||| |||||||| |||||||| |||||  ||||||||||||| ||||| || ||| |||
Sbjct: 37650574 tttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacat 37650515

                                                                            
Query: 154      caagccattcagtcagtttttggaaaggctcttcagtcaagcatggtgtaatattaagta 213
                | ||||| || | ||  ||||||| |  ||| ||||| ||||||||||||||||| || |
Sbjct: 37650514 ccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagca 37650455

                                                                            
Query: 214      aatccttagttgtagctgataaaaatcttgtagagaaggcgatggttgtctgtaaggaga 273
                |||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 37650454 aatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagaga 37650395

                                                                            
Query: 274      agagcaaagtagttgacaagacacatgctacaattgttgctgctacagtcgaaggtattc 333
                |||||||| ||||||| | |||||| || ||||||||||| |||||  | ||||||||||
Sbjct: 37650394 agagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattc 37650335

                                        
Query: 334      caagcaatattgacctcttcaagg 357
                ||||||| ||||||||||||||||
Sbjct: 37650334 caagcaacattgacctcttcaagg 37650311



 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                            
Query: 468      aggaacatgctcttttatatatttccatttaccttgatggcgatggccctttccatgctt 527
                ||||||||||| | |||| |  |||||||| ||||||||  | |||| ||||||||||||
Sbjct: 37649457 aggaacatgctttcttatgttcttccattttccttgatgatgttggctctttccatgctt 37649398

                                                                            
Query: 528      gccctgaaagggctgagagaacaaggtcggctgggtaggtcttttggcaaagtgacaata 587
                |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 37649397 gccctgaaagggctgaaagaacaaggtcggttgggtagatcttttggcaaagtgacaata 37649338

                                          
Query: 588      cgggatcaaccaccttccaacacaat 613
                   |||||||||||||| ||||||||
Sbjct: 37649337 aaagatcaaccaccttcaaacacaat 37649312



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                            
Query: 355      aggaacttgtacttcccttcgcaataatggctgaaaaattcaacaaacttaaacgctggg 414
                |||| ||| ||||||| || |||||| ||  |||||||||| |||| || ||||||||||
Sbjct: 37650068 aggagcttatacttccttttgcaatagtgagtgaaaaattctacaagctcaaacgctggg 37650009

                                                                        
Query: 415      agaatccccgttcaaccatttgttttctactgttagtttatactgttattttcagg 470
                | ||| | ||| |||||  ||||||||||||  | ||||||||| |||| ||||||
Sbjct: 37650008 aaaattctcgtacaaccgcttgttttctacttgtggtttatactattatcttcagg 37649953

to top

>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score =  230 bits (116), Expect = 4e-57
 Identities = 227/264 (85%)
 Strand = Plus / Minus

                                                                          
Query: 94     ttttcgacatagacggtagtgtgtacttaggcaagtggatgacgtctccaagctgggcat 153
              |||| |||||||| |||||||| |||||  ||||||||||||| ||||| || ||| |||
Sbjct: 111048 tttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacat 110989

                                                                          
Query: 154    caagccattcagtcagtttttggaaaggctcttcagtcaagcatggtgtaatattaagta 213
              | ||||| || | ||  ||||||| |  ||| ||||| ||||||||||||||||| || |
Sbjct: 110988 ccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagca 110929

                                                                          
Query: 214    aatccttagttgtagctgataaaaatcttgtagagaaggcgatggttgtctgtaaggaga 273
              |||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 110928 aatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagaga 110869

                                                                          
Query: 274    agagcaaagtagttgacaagacacatgctacaattgttgctgctacagtcgaaggtattc 333
              |||||||| ||||||| | |||||| || ||||||||||| |||||  | ||||||||||
Sbjct: 110868 agagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattc 110809

                                      
Query: 334    caagcaatattgacctcttcaagg 357
              ||||||| ||||||||||||||||
Sbjct: 110808 caagcaacattgacctcttcaagg 110785



 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                          
Query: 468    aggaacatgctcttttatatatttccatttaccttgatggcgatggccctttccatgctt 527
              ||||||||||| | |||| |  |||||||| ||||||||  | |||| ||||||||||||
Sbjct: 109931 aggaacatgctttcttatgttcttccattttccttgatgatgttggctctttccatgctt 109872

                                                                          
Query: 528    gccctgaaagggctgagagaacaaggtcggctgggtaggtcttttggcaaagtgacaata 587
              |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 109871 gccctgaaagggctgaaagaacaaggtcggttgggtagatcttttggcaaagtgacaata 109812

                                        
Query: 588    cgggatcaaccaccttccaacacaat 613
                 |||||||||||||| ||||||||
Sbjct: 109811 aaagatcaaccaccttcaaacacaat 109786



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                          
Query: 355    aggaacttgtacttcccttcgcaataatggctgaaaaattcaacaaacttaaacgctggg 414
              |||| ||| ||||||| || |||||| ||  |||||||||| |||| || ||||||||||
Sbjct: 110542 aggagcttatacttccttttgcaatagtgagtgaaaaattctacaagctcaaacgctggg 110483

                                                                      
Query: 415    agaatccccgttcaaccatttgttttctactgttagtttatactgttattttcagg 470
              | ||| | ||| |||||  ||||||||||||  | ||||||||| |||| ||||||
Sbjct: 110482 aaaattctcgtacaaccgcttgttttctacttgtggtttatactattatcttcagg 110427

to top

>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete
            sequence
          Length = 150375

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 433  tttgttttctactgttagtttat 455
            |||||||||||||||||||||||
Sbjct: 5367 tttgttttctactgttagtttat 5345

to top

>gb|AC103770.5| Homo sapiens chromosome 8, clone RP11-122A3, complete sequence
          Length = 176632

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 42     tcacttcaaaggcataaacattc 64
              |||||||||||||||||||||||
Sbjct: 160337 tcacttcaaaggcataaacattc 160359

to top

>gb|AC093329.6| Homo sapiens chromosome 8, clone RP11-662G23, complete sequence
          Length = 191820

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 42     tcacttcaaaggcataaacattc 64
              |||||||||||||||||||||||
Sbjct: 168493 tcacttcaaaggcataaacattc 168471

to top

>gb|AC068510.8| Homo sapiens chromosome 8, clone RP11-662E23, complete sequence
          Length = 191820

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 42     tcacttcaaaggcataaacattc 64
              |||||||||||||||||||||||
Sbjct: 168492 tcacttcaaaggcataaacattc 168470

to top

>dbj|AK164851.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930019A09 product:unclassifiable, full
            insert sequence
          Length = 4796

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 433  tttgttttctactgttagtttat 455
            |||||||||||||||||||||||
Sbjct: 4304 tttgttttctactgttagtttat 4282

to top

>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete
             sequence
          Length = 193547

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 433   tttgttttctactgttagtttat 455
             |||||||||||||||||||||||
Sbjct: 94605 tttgttttctactgttagtttat 94583

to top

>gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete
             sequence
          Length = 250743

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 483   tatatatttccatttaccttga 504
             ||||||||||||||||||||||
Sbjct: 34654 tatatatttccatttaccttga 34675

to top

>emb|Z69369.1|SPAC3F10 S.pombe chromosome I cosmid c3F10
          Length = 38010

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 480   ttttatatatttccatttaccttgat 505
             |||||||||||||||||||| |||||
Sbjct: 26113 ttttatatatttccatttactttgat 26088

to top

>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170046

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 430   ccatttgttttctactgttagt 451
             ||||||||||||||||||||||
Sbjct: 43874 ccatttgttttctactgttagt 43895

to top

>emb|AL158813.16| Human DNA sequence from clone RP11-29C12 on chromosome 6 Contains part
             of the MDN1 gene for midasin homolog (yeast)(KIAA0301) and
             a pseudogene similar to part of a novel protein (similar
             to 1810055D05RIK), complete sequence
          Length = 57084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 451   tttatactgttattttcagga 471
             |||||||||||||||||||||
Sbjct: 18074 tttatactgttattttcagga 18054

to top

>gb|AC092489.4| Oryza sativa chromosome 10 BAC OSJNBa0066I08 genomic sequence, complete
             sequence
          Length = 25375

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   aatccttagttgtagctgata 234
             |||||||||||||||||||||
Sbjct: 19996 aatccttagttgtagctgata 20016

to top

>emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair keratin 2, exons 1 to 9
          Length = 14707

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 516  ctttccatgcttgccctgaaa 536
            |||||||||||||||||||||
Sbjct: 7452 ctttccatgcttgccctgaaa 7432

to top

>emb|AL604027.9| Mouse DNA sequence from clone RP23-155G20 on chromosome 11, complete
             sequence
          Length = 196398

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 478   tcttttatatatttccatttacctt 502
             ||||| |||||||||||||||||||
Sbjct: 78290 tctttgatatatttccatttacctt 78314

to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 214      aatccttagttgtagctgata 234
                |||||||||||||||||||||
Sbjct: 18369405 aatccttagttgtagctgata 18369425

to top

>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 516   ctttccatgcttgccctgaaa 536
             |||||||||||||||||||||
Sbjct: 12721 ctttccatgcttgccctgaaa 12701

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 214      aatccttagttgtagctgata 234
                |||||||||||||||||||||
Sbjct: 18379458 aatccttagttgtagctgata 18379478

to top

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 336     agcaatattgacctcttcaa 355
               ||||||||||||||||||||
Sbjct: 3160774 agcaatattgacctcttcaa 3160755

to top

>emb|CT009607.7| Mouse DNA sequence from clone RP23-134I10 on chromosome 17, complete
            sequence
          Length = 195995

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 473  catgctcttttatatatttccatt 496
            ||||||| ||||||||||||||||
Sbjct: 1381 catgctcatttatatatttccatt 1358

to top

>ref|XM_808461.1| Trypanosoma cruzi strain CL Brener zinc-binding protein (Yippee)
           (Tc00.1047053506835.150) partial mRNA
          Length = 375

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 515 cctttccatgcttgccctgaaagg 538
           |||||||||||||||| |||||||
Sbjct: 124 cctttccatgcttgccatgaaagg 101

to top

>ref|XM_813907.1| Trypanosoma cruzi strain CL Brener zinc-binding protein (Yippee)
           (Tc00.1047053506945.105) partial mRNA
          Length = 375

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 515 cctttccatgcttgccctgaaagg 538
           |||||||||||||||| |||||||
Sbjct: 124 cctttccatgcttgccatgaaagg 101

to top

>emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on chromosome 10 Contains the
             3' end of the SLC18A2 gene for member 2 solute carrier
             family 18 (vesicular monoamine) and the 3' end of gene
             LOC118987, complete sequence
          Length = 104711

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aagcatggtgtaatattaag 211
             ||||||||||||||||||||
Sbjct: 39430 aagcatggtgtaatattaag 39411

to top

>emb|AL392173.8| Human DNA sequence from clone RP11-158M9 on chromosome Xq26.1-27.1,
              complete sequence
          Length = 170746

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    tagctgataaaaatcttgta 245
              ||||||||||||||||||||
Sbjct: 144248 tagctgataaaaatcttgta 144229

to top

>emb|AL390961.17| Human DNA sequence from clone RP13-16H11 on chromosome 10 Contains
             three novel genes, the gene for trans-prenyltransferase
             (TPT), the 3' end of the SSH3BP gene for spectrin SH3
             domain binding protein 1, a heat shock protein pseudogene
             and a CpG island, complete sequence
          Length = 173950

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ttttatatatttccatttac 499
             ||||||||||||||||||||
Sbjct: 62530 ttttatatatttccatttac 62549

to top

>emb|AL365501.11| Human DNA sequence from clone RP13-27G4 on chromosome 10 Contains two
             novel genes (LOC119151) (FLJ40086) (LOC338616), complete
             sequence
          Length = 72889

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   ttttatatatttccatttac 499
             ||||||||||||||||||||
Sbjct: 15239 ttttatatatttccatttac 15220

to top

>emb|AL049745.9|HSJ654H19 Human DNA sequence from clone RP4-654H19 on chromosome 1p31.1-33 Contains
              the 5' end of the gene for likely ortholog of mouse
              Gli-similar 1 Kruppel-like zinc finger (Glia1) (FLJ36155),
              a novel gene (FLJ10407), a ribosomal protein L37 (RPL37)
              pseudogene and a CpG island, complete sequence
          Length = 117493

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    attttcaggaacatgctctt 481
              ||||||||||||||||||||
Sbjct: 104892 attttcaggaacatgctctt 104911

to top

>emb|AL034345.3|HS207H1 Human DNA sequence from clone RP1-207H1 on chromosome 6p21.1-21.31
            Contains part of the DNAH8 gene for dynein axonemal heavy
            polypeptide 8, the 3' part of a novel gene and a 40S
            ribosomal protein S2 (RPS2) pseudogene, complete sequence
          Length = 84756

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 474  atgctcttttatatatttccattt 497
            |||| |||||||||||||||||||
Sbjct: 4647 atgcccttttatatatttccattt 4624

to top

>gb|AC130886.3| Homo sapiens X BAC RP11-361B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79337

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   acaagacacatgctacaatt 308
             ||||||||||||||||||||
Sbjct: 19502 acaagacacatgctacaatt 19521

to top

>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 385     ctgaaaaattcaacaaacttaaac 408
               ||||||||||||||||| ||||||
Sbjct: 1064106 ctgaaaaattcaacaaagttaaac 1064129

to top

>gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, complete sequence
          Length = 164270

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    atgctcttttatatatttccattt 497
              |||| |||||||||||||||||||
Sbjct: 110509 atgcccttttatatatttccattt 110486

to top

>gb|AC096566.2| Homo sapiens BAC clone RP11-292B1 from 4, complete sequence
          Length = 101931

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    cttcaaaggcataaacattcagaa 68
             ||||||||||||| ||||||||||
Sbjct: 10225 cttcaaaggcatatacattcagaa 10248

to top

>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ggctcttcagtcaagcatgg 199
              ||||||||||||||||||||
Sbjct: 223351 ggctcttcagtcaagcatgg 223370

to top

>gb|AC007677.3| Homo sapiens BAC clone RP11-86N1 from 2, complete sequence
          Length = 166949

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   agtttatactgttattttca 468
             ||||||||||||||||||||
Sbjct: 10945 agtttatactgttattttca 10964

to top

>ref|NM_208684.1| Eremothecium gossypii ACL073Wp (ACL073W), mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 ggctcttcagtcaagcatgg 199
           ||||||||||||||||||||
Sbjct: 550 ggctcttcagtcaagcatgg 569

to top

>gb|AC005880.3|AC005880 citb_43_a_11, complete sequence
          Length = 146388

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aagcatggtgtaatattaag 211
             ||||||||||||||||||||
Sbjct: 78256 aagcatggtgtaatattaag 78237

to top

>emb|BX323877.4| Zebrafish DNA sequence from clone DKEYP-96F6 in linkage group 18,
             complete sequence
          Length = 117654

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaatgaaagatcacttcaaa 51
             ||||||||||||||||||||
Sbjct: 28950 aaatgaaagatcacttcaaa 28969

to top

>emb|CT486003.10| Mouse DNA sequence from clone RP23-415F11 on chromosome 14, complete
              sequence
          Length = 181037

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tgtagctgataaaaatcttg 243
              ||||||||||||||||||||
Sbjct: 158030 tgtagctgataaaaatcttg 158049

to top

>emb|CT573032.5| Mouse DNA sequence from clone RP24-315C3 on chromosome 17, complete
             sequence
          Length = 40018

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 473   catgctcttttatatatttccatt 496
             ||||||| ||||||||||||||||
Sbjct: 39399 catgctcatttatatatttccatt 39376

to top

>gb|AC151272.2| Mus musculus BAC clone RP24-208G22 from 17, complete sequence
          Length = 148109

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 473   catgctcttttatatatttccatt 496
             ||||||| ||||||||||||||||
Sbjct: 19308 catgctcatttatatatttccatt 19331

to top

>dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157a,
             complete sequence
          Length = 72616

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   aaaattcaacaaacttaaac 408
             ||||||||||||||||||||
Sbjct: 67146 aaaattcaacaaacttaaac 67165

to top

>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
              sequence
          Length = 179420

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     taaaatggcaaatgaaagat 42
              ||||||||||||||||||||
Sbjct: 167277 taaaatggcaaatgaaagat 167296

to top

>emb|AL672067.5| Mouse DNA sequence from clone RP23-5P1 on chromosome X, complete
             sequence
          Length = 225196

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tagctgataaaaatcttgta 245
             ||||||||||||||||||||
Sbjct: 54016 tagctgataaaaatcttgta 54035

to top

>gb|AC155345.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH080L24, complete sequence
          Length = 115119

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   acatgctcttttatatattt 491
             ||||||||||||||||||||
Sbjct: 37125 acatgctcttttatatattt 37106

to top

>emb|AL808117.6| Mouse DNA sequence from clone RP23-240N3 on chromosome 2, complete
             sequence
          Length = 245266

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   gagcaaagtagttgacaaga 294
             ||||||||||||||||||||
Sbjct: 63698 gagcaaagtagttgacaaga 63679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,366,426
Number of Sequences: 3902068
Number of extensions: 6366426
Number of successful extensions: 151430
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151155
Number of HSP's gapped (non-prelim): 275
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result