>SWC4_KLULA (Q6CSS3) SWR1-complex protein 4|
          Length = 497

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +2

Query: 293 VYLRTHALDQMVQAVTASAGIRMIKRVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILT 472
           VYLR+  +     AV          ++  TLQ+LG+ ++P +P+  V  EH +L  +I T
Sbjct: 427 VYLRSSKISTYKPAVQ--------NKIVATLQELGLPVRPAMPSLEVVQEHEKLLKKIAT 478

Query: 473 LLNIQKQLQNKEAE 514
           LL ++KQ+    AE
Sbjct: 479 LLELKKQVDKLTAE 492

>SWC4_ASHGO (Q752S6) SWR1-complex protein 4|
          Length = 488

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +2

Query: 368 RVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQLQNKEAE 514
           +V   LQ+LG+ ++P +P+ AV   H EL   I+TLL++++Q    EAE
Sbjct: 435 KVVSVLQELGLPVRPAMPSAAVVQHHDELLRRIVTLLDLKRQQDKLEAE 483

>SWC4_CANGA (Q6FTV1) SWR1-complex protein 4|
          Length = 532

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +2

Query: 368 RVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQLQNKEA 511
           ++  T Q+LG+  +P +PT  V  E+  L  +I TLL+I+KQ+   EA
Sbjct: 479 KIISTAQELGIPARPVMPTFEVVTEYEALLKKIATLLDIKKQIDKIEA 526

>SWC4_SCHPO (O14308) SWR1-complex protein 4|
          Length = 411

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
 Frame = +2

Query: 110 IMESRAANKNVEEAVAPTSFPNAAVPADGVSPLSNNLXXXXXXXXXXXXXXXIPDTLRM- 286
           ++ S+     VEEA+  +S      P+ GVS + N                  P   +  
Sbjct: 255 MINSQRTKNKVEEAIVSSS-----APSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFG 309

Query: 287 ----LKVYLRTHALDQMVQAVTASAGIRMIKRVDQTLQDLGVNLKPKVPTKAVCAEHLEL 454
                K++  T    Q + A+ AS    + +RV   + +LGV+ +  +PT     + +EL
Sbjct: 310 ITWHEKLHPGTFVRSQKIPAIKAS----LSQRVSSVMTELGVSSRLIMPTAKNFEKFVEL 365

Query: 455 RNEILTLLNIQKQLQNKEAE 514
           +N I++LL +++++     E
Sbjct: 366 QNSIVSLLELKRKVDRLSQE 385

>SWC4_YARLI (Q6C9M6) SWR1-complex protein 4|
          Length = 504

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 368 RVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQLQNKEAEV 517
           ++   LQD+G+  KP +PT  VCA+   +++ +  LL  ++     E E+
Sbjct: 445 KIVAALQDIGIPPKPVMPTAKVCAKFESIQHSMSVLLETKRAADKLETEI 494

>SWC4_CANAL (Q5AAJ7) SWR1-complex protein 4|
          Length = 635

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
 Frame = +2

Query: 359 MIKRVDQTLQDL------GVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQLQNKEAEV 517
           ++K V+  LQ++      G + KP +PT+   A++ EL   ++TLL+++K     E+E+
Sbjct: 568 ILKSVNILLQEMDIPTGGGTSWKPIMPTRKTMAKYDELIRSVVTLLDVKKAKDKLESEI 626

>RADC_THEMA (Q9X1P3) DNA repair protein radC homolog|
          Length = 222

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 323 MVQAVTASAGIRMIKRVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQL 496
           MV+A+T  A + + KR+ + L+ +   L   V     C E + L  EI+ ++ +  +L
Sbjct: 75  MVKAITLKAALELGKRLHRELERIPEKLDSSVKVYKYCQEMVYLEREIVKVICLDTKL 132

>RL9_LACLA (Q9CHI6) 50S ribosomal protein L9|
          Length = 150

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 35  ALSALFSQTKQQERKDAEVLAEAKRIME 118
           ALS +  Q K +E+++AE+LAEAK + E
Sbjct: 43  ALSEVKGQAKAKEKEEAELLAEAKALKE 70

>YLK6_CAEEL (P41954) Hypothetical protein D1044.6|
          Length = 1009

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 11  AHETEXKRALSALFSQTKQQERKDAEVLAEAKRIMESRAANKNVEEAVAPTSFPNAAVPA 190
           A E + K+ L       +++E++DAE L + +  +   A  K+VE A+   S      P+
Sbjct: 438 AEEKKRKQLLEDQCRAKQEKEKRDAEELEQMRLNIARLAGTKDVENALKSPSLVEIVPPS 497

Query: 191 D 193
           D
Sbjct: 498 D 498

>SKI_HUMAN (P12755) Ski oncogene (C-ski)|
          Length = 728

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 30/125 (24%), Positives = 48/125 (38%)
 Frame = +2

Query: 158 PTSFPNAAVPADGVSPLSNNLXXXXXXXXXXXXXXXIPDTLRMLKVYLRTHALDQMVQAV 337
           P++ P+AA PAD  S L   L                 DT    + +L      ++ Q  
Sbjct: 522 PSAVPDAAAPADAPSGLEAELEHLRQALEGGL------DTKEAKEKFLHEVVKMRVKQEE 575

Query: 338 TASAGIRMIKRVDQTLQDLGVNLKPKVPTKAVCAEHLELRNEILTLLNIQKQLQNKEAEV 517
             SA ++  + + Q L+ L V  K K+        +L    E L   N +K  +  E+ +
Sbjct: 576 KLSAALQAKRSLHQELEFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRL 635

Query: 518 LANRE 532
              RE
Sbjct: 636 RLKRE 640

>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 158 PTSFPNAAVPADGVSPLSNNLXXXXXXXXXXXXXXXIPDTLRMLKVYLRTHALDQMVQAV 337
           PTS  + +  ++G +PLS+N                 P  L+ + ++L++  L +   A+
Sbjct: 420 PTSATSTSTSSNGNTPLSSN-------SSMNPKSLTDPKLLKNIPMWLKSLRLHKYSDAL 472

Query: 338 TASAGIRMIKRVDQTLQDLGV 400
           + +  I +I   D+TL+  GV
Sbjct: 473 SGTPWIELIYLDDETLEKKGV 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,533,234
Number of Sequences: 219361
Number of extensions: 1221541
Number of successful extensions: 2955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)