>STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homolog (EC|
           2.7.11.1)
          Length = 1230

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
 Frame = +2

Query: 38  RVLEQLSFPPLQDQDIPDARMDAIPY--ETSFPPVSEQQSRYALALNQSSRGSARLGDES 211
           R+L        + Q  P A MD + +  +TS  P      ++    N+SS  S+   +E+
Sbjct: 504 RLLSASGITKKEQQQHPQAVMDIVAFYQDTSENPDDAAFKKFHFDNNKSS--SSGWSNEN 561

Query: 212 LFPPLPGSSNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARS-----QTAENPE 376
             P  PG SN GS S   G  S    T  S + +++    KV+  ++S     ++ ++  
Sbjct: 562 TPPATPGGSNSGSGSGGGGAPSSPHRTPPSSIIEKNNVEQKVITPSQSMPTKTESKQSEN 621

Query: 377 IVPHVSTSTQTWPK 418
             PH   +TQ  P+
Sbjct: 622 QHPHEDNATQYTPR 635

>PAPOA_HUMAN (P51003) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)|
           (Polynucleotide adenylyltransferase alpha)
          Length = 744

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +2

Query: 164 ALNQSSRGSARLGDESLFPPLPGSSNK----GSASTQQGLQSLAKNTLASRLQ--QRSKG 325
           ALN SS   +   D S+  P P S+ K     S+ + QG  S A    A+ +   Q ++ 
Sbjct: 516 ALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEV 575

Query: 326 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDNGLMPSA 505
           +V  + S+ S    + E +P  +T     P P   +    SS  R+V    R +G   +A
Sbjct: 576 SVPQVNSSESSGGTSSESIPQTATQPAISPPPKPTVSRVVSS-TRLVNPPPRSSG--NAA 632

Query: 506 SSGSA 520
           +SG+A
Sbjct: 633 TSGNA 637

>PAPOA_MOUSE (Q61183) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)|
           (Polynucleotide adenylyltransferase)
          Length = 738

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
 Frame = +2

Query: 164 ALNQSSRGSARLGDESLFPPLPGSSNK----GSASTQQGLQSLAKNTLASRLQ--QRSKG 325
           ALN SS   +   D S+  P P S+ K     S+ + QG  S A    A+ +   Q S+ 
Sbjct: 516 ALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEV 575

Query: 326 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDNG 490
           +V    S+ S    + E +P  +T     P P   +    SS  R+V  S R +G
Sbjct: 576 SVPQANSSESPGGPSSESIPQTATQPAISPPPKPTVSRVVSS-TRLVNPSPRPSG 629

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
 Frame = +2

Query: 137  SEQQSRYALALNQSSRGSARLGDESLFPPLPGSSNKGSASTQQ----GLQSLAKNTLASR 304
            +E Q++  L   Q++ G  +    S      G++++   + QQ    GLQ   +    +R
Sbjct: 3738 AEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQAR 3797

Query: 305  LQQRSKGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRD 484
            LQQ+S+ T +    A SQ A  P+  P  +T  Q    P +    +GS       Q  R 
Sbjct: 3798 LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQP-AGPPRAEQTNGSKGTAKAPQQGRA 3856

Query: 485  NGLMPSASSGSA 520
                P+   G A
Sbjct: 3857 PQAQPTPGPGPA 3868

>SWP82_YEAST (P43554) SWI/SNF global transcription activator complex component|
           SWP82
          Length = 623

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 221 PLPGSSNKGSASTQQGLQSLAKNTLASRLQQRSKGTVKVLYSARSQTAENPEIVPHVSTS 400
           PL  + N G     +GL    KNTL  RL+Q +   +K L         N  +       
Sbjct: 430 PLKSAENSGKQQYYRGLPLYEKNTLLERLKQLTPNEIKELEHLHDAVFVNTGLQNVRKVR 489

Query: 401 TQTWPK 418
           T+ W K
Sbjct: 490 TKKWKK 495

>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)|
          Length = 619

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +2

Query: 128 PPVSEQQSRYALALNQ------SSRGSARLGDESLFPPLPGSSNKGSASTQQGLQSLAKN 289
           PPV+  QS +  +L+        S  S   G  + FP  P SS+ GSA T   +Q     
Sbjct: 270 PPVAGNQSLFHSSLSHLGPQLLPSGPSTSSGASASFPSGPSSSSPGSAPTTVPVQM---- 325

Query: 290 TLASRLQQRSKGTVKVL 340
             ASR+QQ   G   VL
Sbjct: 326 PKASRVQQALAGMTSVL 342

>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2514

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
 Frame = +2

Query: 41   VLEQLSFPPLQDQDIPDARMDAIPYETSFPPVSEQQS----RYALALNQSSRGSARLGDE 208
            V EQ + PP QD++ P+A        T  PP ++  S      +L ++ SS G       
Sbjct: 1675 VPEQPAAPPAQDEEAPEA------VATPAPPAADNTSLDVTDISLDMDDSSEG------- 1721

Query: 209  SLFPPLPGSSNKGSASTQ--QGLQSLAKNTLA---------------SRLQQRSKGTVKV 337
            SLF    GS N  +   +   G  SL +  +                 RL++ ++     
Sbjct: 1722 SLFSSFSGSDNSITCMDRWSSGPSSLDRRQVVVADVHAVQEPAPIPPPRLKKMAR----- 1776

Query: 338  LYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLS 442
              +A S+T E P  +P  STS+      D+ LHLS
Sbjct: 1777 -LAAASKTQEEP--IPPASTSS-----ADESLHLS 1803

>UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 37)
           (Ubiquitin-specific-processing protease 37)
           (Deubiquitinating enzyme 37)
          Length = 979

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
 Frame = +2

Query: 170 NQSS--RGSARLGDESLFPPLPGSSNKGSASTQQG------LQSLAKNT--LASRLQQRS 319
           NQ+S  RGS    D+  F  + G+  +GS  T  G      + SL   +  L S L +  
Sbjct: 142 NQASAKRGSLETKDDIPFRKVLGNPGRGSIKTVAGSGIARTIPSLTSTSTPLRSGLLENR 201

Query: 320 KGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQG-LHLSGSSQLRI-VTQSTRDNGL 493
               K + S  S+  E+       S++ +    P +  L  S   QL +  ++  R +GL
Sbjct: 202 TEKRKRMISTGSELNEDYPKEDGSSSNNKAMTDPSRKYLTSSREKQLSLKQSEENRTSGL 261

Query: 494 MPSASSGSAWNSRASNKMKHSTSTPN 571
           +P  SS S + SRA +K +HS+   N
Sbjct: 262 LPLQSS-SFYGSRAGSK-EHSSGGTN 285

>ATL4K_ARATH (Q940Q4) RING-H2 finger protein ATL4K (RING-H2 finger protein|
           ATL13)
          Length = 472

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 29/105 (27%)
 Frame = +2

Query: 326 TVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQST--------- 478
           T+KV  S + Q+++N  +  H +  ++    P   L  SGS  +RIV ++          
Sbjct: 315 TLKVHVSTKKQSSKNRGLPGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEKNVVERES 374

Query: 479 --------------------RDNGLMPSASSGSAWNSRASNKMKH 553
                               +++  + S+SSG A++ R SN+  H
Sbjct: 375 FSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNH 419

>PKCB1_HUMAN (Q9ULU4) Protein kinase C-binding protein 1 (Rack7) (Cutaneous T-cell|
            lymphoma associated antigen se14-3) (CTCL tumor antigen
            se14-3) (Zinc finger MYND domain containing protein 8)
          Length = 1186

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 305  LQQRSKGTVKVLYSARSQTAENPEIVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRD 484
            L + S+G+     SA S+TA   +      TS +   +    L LSGS +         +
Sbjct: 1082 LNKSSQGSSSSTQSAPSETASASK---EKETSAEKSKESGSTLDLSGSRETPSSILLGSN 1138

Query: 485  NGLMPSASSGSAWNS----RASNKMKHSTST 565
             G   S S+ S+W+S    R S +  H+TST
Sbjct: 1139 QGSDHSRSNKSSWSSSDEKRGSTRSDHNTST 1169

>HXA10_HETFR (Q9IA27) Homeobox protein Hox-A10|
          Length = 271

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
 Frame = +2

Query: 122 SFPPVSEQQSRYALALNQSSRGSARLGDESLFPPLPGSSNKGSASTQQGLQSLAKNTLAS 301
           SFP   ++++ Y L  ++    SA   D S FP L   S   + +T  G   +      S
Sbjct: 28  SFPQNIKEENAYCLYDSEKCPKSAAATDLSTFPRLTSESCSNNDTTTSGGVPVPGYFRLS 87

Query: 302 RLQQRSKGTVKVLYSARSQTAENPEIVPH-----------VSTSTQTWPKPDQGL---HL 439
           +    SK T   LYS   Q   +P  VP             ST T+   K  +G    HL
Sbjct: 88  QAYPTSKQT---LYSNTGQVGASP-FVPQSQIRFGTPPSSASTPTELGRKGSEGTSPGHL 143

Query: 440 SGSSQLR----IVTQSTRDNGLMPSASSGSAWNSRASNKMK 550
           + SS+        + +  ++  +PS S+ ++       ++K
Sbjct: 144 TCSSEREEAEAAASSANEESSPVPSESNKNSPEKETKGEVK 184

>ARGC_BUCAP (Q8KA61) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 334

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 165 LLIRAQGVLQGLVMNHYSLHCLGQVTRVLLQHNRGCKVLLRTHLHQGFNNVVRAP 329
           L++ A G     ++N+ + H   ++ ++ +  N      L + LHQ F N++  P
Sbjct: 5   LIVGASGYSGAELVNYINRHMFSKIKKIFVSENSSHIGKLFSELHQEFKNIIDLP 59

>RFX1_YEAST (P48743) RFX-like DNA-binding protein RFX1|
          Length = 811

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
 Frame = +2

Query: 53  LSFPPLQDQDIPDARMDAIPYETSFPPVSEQQSRYALALNQSSRGSARLGDESLFPPL-- 226
           L+ P    Q  P +     P   + PP++ + S     L+QSS          + PPL  
Sbjct: 74  LNAPKYSSQPPPASHTYLPPMSVNIPPIASKSSSIYSLLHQSSPRPET--PNPILPPLIG 131

Query: 227 --PGSSNKGSASTQQGLQSLAKNTLAS--------RLQQRSKGTVKVLYSARSQTAENPE 376
             PGS       TQ   Q   +   A+         L + +     + + +      NP 
Sbjct: 132 SGPGSHKPSPTPTQPPAQPATQRQPATYSVYPASISLNRSNSSAYPLSFKSEETLNNNP- 190

Query: 377 IVPHVSTSTQTWPKPDQGLHLSGSSQLRIVTQSTRDN 487
             P  +  T T+P          +SQ + ++  +R N
Sbjct: 191 --PTAAKRTNTFPSIPSSTKKQKTSQEKRISSISRRN 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,869,810
Number of Sequences: 219361
Number of extensions: 2228515
Number of successful extensions: 5783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5779
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7649585595
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)