ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24j12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 196 bits (99), Expect = 7e-47 Identities = 355/439 (80%), Gaps = 6/439 (1%) Strand = Plus / Plus Query: 32 aatggtcgcgtgcttgagcaattgtcttttcctccacttcaagaccaggatattcctgat 91 ||||| || ||| |||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct: 133515 aatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgat 133574 Query: 92 gctaggatggatgccattccctatgaaacctcgtttcctcccgtctcagagcagcaatca 151 || |||||||| | ||| |||||||||| || ||| || |||||||||||||| | Sbjct: 133575 gcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaacc 133634 Query: 152 aggtatgcgctggctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatca 211 || ||||| | ||||||| |||||| || | |||| | |||||| ||||| | | Sbjct: 133635 agatatgctcatgctcttagtcagagttcccttg---ctgccaagcttggggatgagtta 133691 Query: 212 ttattccctccattgcctgggtcaagtaacaa---gggttctgcttcaacacaacagggg 268 |||||||||||| | ||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct: 133692 ttattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacagggg 133751 Query: 269 ctgcaaagtcttgctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcacc 328 || |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 133752 ctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagt 133811 Query: 329 gtgaaggtactatattctgctcggtctcaaacagctgaaaatcctgagatagtacctcat 388 ||||| ||||| ||||||| ||| ||| || ||||||||||||| ||| |||| | Sbjct: 133812 gtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcct 133871 Query: 389 gtttccacttccacccagacatggcctaaacctgaccaggggctacatctttctggttct 448 ||||| | |||| | |||| ||||||| |||||| |||||||| | || |||| ||||| Sbjct: 133872 gtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttct 133931 Query: 449 tctcaacttcggattgtaa 467 || || ||||| ||||||| Sbjct: 133932 tcccagcttcgaattgtaa 133950 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 619 tggcaataaaagccaactgccaccacaaagcagccaacctttgcctg 665 ||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct: 134090 tggcaataaaaaacaacagccaccacaaagcagccaaacattgcctg 134136
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 196 bits (99), Expect = 7e-47 Identities = 355/439 (80%), Gaps = 6/439 (1%) Strand = Plus / Plus Query: 32 aatggtcgcgtgcttgagcaattgtcttttcctccacttcaagaccaggatattcctgat 91 ||||| || ||| |||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct: 8456 aatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgat 8515 Query: 92 gctaggatggatgccattccctatgaaacctcgtttcctcccgtctcagagcagcaatca 151 || |||||||| | ||| |||||||||| || ||| || |||||||||||||| | Sbjct: 8516 gcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaacc 8575 Query: 152 aggtatgcgctggctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatca 211 || ||||| | ||||||| |||||| || | |||| | |||||| ||||| | | Sbjct: 8576 agatatgctcatgctcttagtcagagttcccttg---ctgccaagcttggggatgagtta 8632 Query: 212 ttattccctccattgcctgggtcaagtaacaa---gggttctgcttcaacacaacagggg 268 |||||||||||| | ||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct: 8633 ttattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacagggg 8692 Query: 269 ctgcaaagtcttgctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcacc 328 || |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 8693 ctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagt 8752 Query: 329 gtgaaggtactatattctgctcggtctcaaacagctgaaaatcctgagatagtacctcat 388 ||||| ||||| ||||||| ||| ||| || ||||||||||||| ||| |||| | Sbjct: 8753 gtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcct 8812 Query: 389 gtttccacttccacccagacatggcctaaacctgaccaggggctacatctttctggttct 448 ||||| | |||| | |||| ||||||| |||||| |||||||| | || |||| ||||| Sbjct: 8813 gtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttct 8872 Query: 449 tctcaacttcggattgtaa 467 || || ||||| ||||||| Sbjct: 8873 tcccagcttcgaattgtaa 8891 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 619 tggcaataaaagccaactgccaccacaaagcagccaacctttgcctg 665 ||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct: 9031 tggcaataaaaaacaacagccaccacaaagcagccaaacattgcctg 9077
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 196 bits (99), Expect = 7e-47 Identities = 355/439 (80%), Gaps = 6/439 (1%) Strand = Plus / Plus Query: 32 aatggtcgcgtgcttgagcaattgtcttttcctccacttcaagaccaggatattcctgat 91 ||||| || ||| |||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct: 11564021 aatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgat 11564080 Query: 92 gctaggatggatgccattccctatgaaacctcgtttcctcccgtctcagagcagcaatca 151 || |||||||| | ||| |||||||||| || ||| || |||||||||||||| | Sbjct: 11564081 gcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaacc 11564140 Query: 152 aggtatgcgctggctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatca 211 || ||||| | ||||||| |||||| || | |||| | |||||| ||||| | | Sbjct: 11564141 agatatgctcatgctcttagtcagagttcccttg---ctgccaagcttggggatgagtta 11564197 Query: 212 ttattccctccattgcctgggtcaagtaacaa---gggttctgcttcaacacaacagggg 268 |||||||||||| | ||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct: 11564198 ttattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacagggg 11564257 Query: 269 ctgcaaagtcttgctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcacc 328 || |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 11564258 ctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagt 11564317 Query: 329 gtgaaggtactatattctgctcggtctcaaacagctgaaaatcctgagatagtacctcat 388 ||||| ||||| ||||||| ||| ||| || ||||||||||||| ||| |||| | Sbjct: 11564318 gtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcct 11564377 Query: 389 gtttccacttccacccagacatggcctaaacctgaccaggggctacatctttctggttct 448 ||||| | |||| | |||| ||||||| |||||| |||||||| | || |||| ||||| Sbjct: 11564378 gtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttct 11564437 Query: 449 tctcaacttcggattgtaa 467 || || ||||| ||||||| Sbjct: 11564438 tcccagcttcgaattgtaa 11564456 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 619 tggcaataaaagccaactgccaccacaaagcagccaacctttgcctg 665 ||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct: 11564596 tggcaataaaaaacaacagccaccacaaagcagccaaacattgcctg 11564642
>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full insert sequence Length = 3311 Score = 196 bits (99), Expect = 7e-47 Identities = 355/439 (80%), Gaps = 6/439 (1%) Strand = Plus / Plus Query: 32 aatggtcgcgtgcttgagcaattgtcttttcctccacttcaagaccaggatattcctgat 91 ||||| || ||| |||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct: 1320 aatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgat 1379 Query: 92 gctaggatggatgccattccctatgaaacctcgtttcctcccgtctcagagcagcaatca 151 || |||||||| | ||| |||||||||| || ||| || |||||||||||||| | Sbjct: 1380 gcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaacc 1439 Query: 152 aggtatgcgctggctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatca 211 || ||||| | ||||||| |||||| || | |||| | |||||| ||||| | | Sbjct: 1440 agatatgctcatgctcttagtcagagttcccttg---ctgccaagcttggggatgagtta 1496 Query: 212 ttattccctccattgcctgggtcaagtaacaa---gggttctgcttcaacacaacagggg 268 |||||||||||| | ||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct: 1497 ttattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacagggg 1556 Query: 269 ctgcaaagtcttgctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcacc 328 || |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 1557 ctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagt 1616 Query: 329 gtgaaggtactatattctgctcggtctcaaacagctgaaaatcctgagatagtacctcat 388 ||||| ||||| ||||||| ||| ||| || ||||||||||||| ||| |||| | Sbjct: 1617 gtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcct 1676 Query: 389 gtttccacttccacccagacatggcctaaacctgaccaggggctacatctttctggttct 448 ||||| | |||| | |||| ||||||| |||||| |||||||| | || |||| ||||| Sbjct: 1677 gtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttct 1736 Query: 449 tctcaacttcggattgtaa 467 || || ||||| ||||||| Sbjct: 1737 tcccagcttcgaattgtaa 1755 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 619 tggcaataaaagccaactgccaccacaaagcagccaacctttgcctg 665 ||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct: 1895 tggcaataaaaaacaacagccaccacaaagcagccaaacattgcctg 1941
>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full insert sequence Length = 3137 Score = 196 bits (99), Expect = 7e-47 Identities = 355/439 (80%), Gaps = 6/439 (1%) Strand = Plus / Plus Query: 32 aatggtcgcgtgcttgagcaattgtcttttcctccacttcaagaccaggatattcctgat 91 ||||| || ||| |||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct: 1272 aatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgat 1331 Query: 92 gctaggatggatgccattccctatgaaacctcgtttcctcccgtctcagagcagcaatca 151 || |||||||| | ||| |||||||||| || ||| || |||||||||||||| | Sbjct: 1332 gcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaacc 1391 Query: 152 aggtatgcgctggctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatca 211 || ||||| | ||||||| |||||| || | |||| | |||||| ||||| | | Sbjct: 1392 agatatgctcatgctcttagtcagagttcccttg---ctgccaagcttggggatgagtta 1448 Query: 212 ttattccctccattgcctgggtcaagtaacaa---gggttctgcttcaacacaacagggg 268 |||||||||||| | ||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct: 1449 ttattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacagggg 1508 Query: 269 ctgcaaagtcttgctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcacc 328 || |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 1509 ctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagt 1568 Query: 329 gtgaaggtactatattctgctcggtctcaaacagctgaaaatcctgagatagtacctcat 388 ||||| ||||| ||||||| ||| ||| || ||||||||||||| ||| |||| | Sbjct: 1569 gtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcct 1628 Query: 389 gtttccacttccacccagacatggcctaaacctgaccaggggctacatctttctggttct 448 ||||| | |||| | |||| ||||||| |||||| |||||||| | || |||| ||||| Sbjct: 1629 gtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttct 1688 Query: 449 tctcaacttcggattgtaa 467 || || ||||| ||||||| Sbjct: 1689 tcccagcttcgaattgtaa 1707 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 619 tggcaataaaagccaactgccaccacaaagcagccaacctttgcctg 665 ||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct: 1847 tggcaataaaaaacaacagccaccacaaagcagccaaacattgcctg 1893
>ref|XM_712472.1| Candida albicans SC5314 phospholipase B5 (CaO19_12568), mRNA Length = 2265 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 586 atcctctgcccaggcatcatcaa 608 ||||||||||||||||||||||| Sbjct: 180 atcctctgcccaggcatcatcaa 202
>emb|AL033501.1|CAC41C10 C.albicans cosmid Ca41C10 Length = 38874 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 586 atcctctgcccaggcatcatcaa 608 ||||||||||||||||||||||| Sbjct: 34921 atcctctgcccaggcatcatcaa 34943
>gb|AF038128.1|AF038128 Candida albicans putative phospholipase B precursor (PLB1) gene, complete cds Length = 2400 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 586 atcctctgcccaggcatcatcaa 608 ||||||||||||||||||||||| Sbjct: 281 atcctctgcccaggcatcatcaa 303
>gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167510 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 acttcaagaccaggatattcct 88 |||||||||||||||||||||| Sbjct: 14557 acttcaagaccaggatattcct 14578
>gb|U91328.1|HSU91328 Human hereditary haemochromatosis region, histone 2A-like protein gene, hereditary haemochromatosis (HLA-H) gene, RoRet gene, and sodium phosphate transporter (NPT3) gene, complete cds Length = 246282 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 ttccacccagacatggcctaaa 418 |||||||||||||||||||||| Sbjct: 199238 ttccacccagacatggcctaaa 199259
>gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, complete sequence Length = 189457 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 acttcaagaccaggatattcct 88 |||||||||||||||||||||| Sbjct: 142547 acttcaagaccaggatattcct 142568
>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete sequence Length = 787999 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 aaacctgaccaggggctacat 436 ||||||||||||||||||||| Sbjct: 263444 aaacctgaccaggggctacat 263424
>gb|AY656702.1| Homo sapiens interleukin 13 receptor, alpha 2 (IL13RA2) gene, complete cds Length = 17618 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 aaggcttggtgatgaatcatt 213 ||||||||||||||||||||| Sbjct: 5694 aaggcttggtgatgaatcatt 5674
>emb|AL121878.11|HSDA204F4 Human DNA sequence from clone RP6-204F4 on chromosome Xq23-24 Contains the IL13RA2 gene for interleukin 13 receptor, alpha 2, a zinc finger protein 33a (ZNF33A) pseudogene, a Yes-associated protein 1 65kDa (YAP1) pseudogene and the 3'end of a novel gene (KIAA1495), complete sequence Length = 122889 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aaggcttggtgatgaatcatt 213 ||||||||||||||||||||| Sbjct: 17984 aaggcttggtgatgaatcatt 18004
>gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosome 8, complete sequence Length = 177689 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ctgaccaggggctacatcttt 440 ||||||||||||||||||||| Sbjct: 69051 ctgaccaggggctacatcttt 69031
>emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chromosome 11, complete sequence Length = 169954 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ttccctccattgcctgggtca 235 ||||||||||||||||||||| Sbjct: 7872 ttccctccattgcctgggtca 7852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,673,952 Number of Sequences: 3902068 Number of extensions: 6673952 Number of successful extensions: 118659 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118585 Number of HSP's gapped (non-prelim): 69 length of query: 735 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 712 effective length of database: 17,143,297,704 effective search space: 12206027965248 effective search space used: 12206027965248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
