ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24i15 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 122 bits (305), Expect = 1e-27 Identities = 74/181 (40%), Positives = 105/181 (58%), Gaps = 1/181 (0%) Frame = +3 Query: 54 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 233 E++EFLR +LIGK+V V ++Y R S + +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATDTVPAFSERTCATVTIGG----------- 447 Query: 234 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 410 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 411 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCIIA 590 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC+I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 591 F 593 F Sbjct: 553 F 553 Score = 35.4 bits (80), Expect = 0.13 Identities = 32/138 (23%), Positives = 57/138 (41%) Frame = +3 Query: 6 LGNPRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRV 185 + P D E +A ++EFLR +LIGK+V +E T G+ Sbjct: 65 VAQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR------------- 107 Query: 186 LDYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDA 365 +YG ++LG + + N+AE L++ G A ++ + + Sbjct: 108 -EYGMIYLGKDTNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNR 148 Query: 366 LLAAHSRAEKAKKGVHSD 419 L +A+ +KKG+ S+ Sbjct: 149 LAECEEQAKASKKGMWSE 166
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 122 bits (305), Expect = 1e-27 Identities = 74/181 (40%), Positives = 105/181 (58%), Gaps = 1/181 (0%) Frame = +3 Query: 54 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 233 E++EFLR +LIGK+V+V ++Y R S +PA S + G Sbjct: 400 EAREFLRKKLIGKKVSVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 446 Query: 234 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 410 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 447 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 492 Query: 411 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCIIA 590 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC+I Sbjct: 493 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 551 Query: 591 F 593 F Sbjct: 552 F 552 Score = 35.4 bits (80), Expect = 0.13 Identities = 33/135 (24%), Positives = 56/135 (41%) Frame = +3 Query: 15 PRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDY 194 P D E +A ++EFLR +LIGK+V +E T G+ +Y Sbjct: 67 PDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EY 108 Query: 195 GSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLA 374 G ++LG + + N+AE L++ G A S+ + + L Sbjct: 109 GMIYLGKDTNGE----------------NIAESLVAEGLA--SRREGMRANNPEQNRLSE 150 Query: 375 AHSRAEKAKKGVHSD 419 +A+ +KKG+ S+ Sbjct: 151 CEEQAKASKKGMWSE 165
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 121 bits (304), Expect = 1e-27 Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Frame = +3 Query: 54 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 233 E++EFLR +LIGK+V V ++Y R S +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 447 Query: 234 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 410 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 411 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCIIA 590 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC+I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 591 F 593 F Sbjct: 553 F 553 Score = 34.3 bits (77), Expect = 0.28 Identities = 32/135 (23%), Positives = 56/135 (41%) Frame = +3 Query: 15 PRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDY 194 P D E +A ++EFLR +LIGK+V +E T G+ +Y Sbjct: 68 PDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EY 109 Query: 195 GSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLA 374 G ++LG + + N+AE L++ G A ++ + + L Sbjct: 110 GMIYLGKDTNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNRLSE 151 Query: 375 AHSRAEKAKKGVHSD 419 +A+ +KKG+ S+ Sbjct: 152 CEEQAKASKKGMWSE 166
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 121 bits (304), Expect = 1e-27 Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Frame = +3 Query: 54 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 233 E++EFLR +LIGK+V V ++Y R S +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 447 Query: 234 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 410 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 411 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCIIA 590 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC+I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 591 F 593 F Sbjct: 553 F 553 Score = 35.8 bits (81), Expect = 0.096 Identities = 33/135 (24%), Positives = 56/135 (41%) Frame = +3 Query: 15 PRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDY 194 P D E +A ++EFLR +LIGK+V +E T G+ +Y Sbjct: 68 PDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EY 109 Query: 195 GSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLA 374 G ++LG + + N+AE L++ G A ++ + + L Sbjct: 110 GMIYLGKDTNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNRLSE 151 Query: 375 AHSRAEKAKKGVHSD 419 +A+ AKKG+ S+ Sbjct: 152 CEEQAKAAKKGMWSE 166
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 118 bits (295), Expect = 1e-26 Identities = 75/181 (41%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Frame = +3 Query: 54 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 233 E++EFLR +LIGK+V V ++Y R + NAM +G P+ + Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAAT-----NAME----------------MGVPAFPE- 440 Query: 234 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 410 +T T IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 441 ----RTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 496 Query: 411 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCIIA 590 HS K P+ + D++ ++KAK F PFLQR R A+VEYVFSG R KL +PKETC+I Sbjct: 497 HSKKEVPIHRVADISG-ETQKAKQFFPFLQRAGRSEAVVEYVFSGSRLKLYMPKETCLIT 555 Query: 591 F 593 F Sbjct: 556 F 556 Score = 35.4 bits (80), Expect = 0.13 Identities = 32/137 (23%), Positives = 57/137 (41%) Frame = +3 Query: 9 GNPRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVL 188 G P D E +A +++EF+R ++IGK+V +E T G+ Sbjct: 66 GQPDTKDTPDEPWAFQAREFMRKKVIGKEVCFTVEN----KTPQGR-------------- 107 Query: 189 DYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDAL 368 +YG V+LG + + N+AE L++ G A + + + L Sbjct: 108 EYGMVYLGKDTSGE----------------NIAESLVAEGLAMV-RREGIRGNNPEQVRL 150 Query: 369 LAAHSRAEKAKKGVHSD 419 +A+ +KKG+ S+ Sbjct: 151 CDLEDQAKSSKKGLWSE 167
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 35.4 bits (80), Expect = 0.13 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 17/154 (11%) Frame = +3 Query: 6 LGNPRXXDNKPENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRV 185 + PR D++P++F+ + T+ G ++ + R T+ G P+ S + + Sbjct: 1034 VAGPRAQDSEPKSFSAPA-----TQAYGHEIPL------RNGTLGGSFVSPSPLSTSSPI 1082 Query: 186 LDYGSVFLGS-PSQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERS---- 350 L S +GS PS G+ + P T TQP + S G + S R+Y+ S Sbjct: 1083 LSADSTSVGSFPS---GESSDQGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPT 1139 Query: 351 ------------HYFDALLAAHSRAEKAKKGVHS 416 +F + + +RA+ + GVH+ Sbjct: 1140 VGSSYSSPDYSLQHFSSSPESQARAQFSVAGVHT 1173
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 126 ISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQP 272 ++ M NA+ A SA R +GSV GS + D+TS++P +QP Sbjct: 1385 MNAMPSHNAVNARPSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQP 1433
>RR8_SPIOL (P09597) Chloroplast 30S ribosomal protein S8| Length = 133 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +3 Query: 225 ADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEK 395 AD + +V T N+ ++LL GF I R ++ER+ YF L H R +K Sbjct: 15 ADMNRKGTVRIVSTNITENIVKILLREGF--IENARKHQERNKYFLVLTLRHRRNKK 69
>ALGD_PSESH (O07299) GDP-mannose 6-dehydrogenase (EC 1.1.1.132) (GMD)| Length = 438 Score = 30.8 bits (68), Expect = 3.1 Identities = 35/143 (24%), Positives = 54/143 (37%) Frame = +3 Query: 123 RISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLS 302 R +T QNA V+S DTR + LG +A DD P + +AE+L+ Sbjct: 295 RSNTSQVQNAFDMVASYDTRKV----ALLGLSFKAGTDDLRE------SPLVELAEMLIG 344 Query: 303 RGFAAISKHRDYEERSHYFDALLAAHSRAEKAKKGVHSDKLPPVMHITDLTMVNSKKAKD 482 +GF FD+ + ++R A K K+P V + + D Sbjct: 345 KGFDL-----------SIFDSNV-EYARVHGANKDYIESKIPHVSSLLNSDFDQVINDSD 392 Query: 483 FLPFLQRNRRHTAIVEYVFSGHR 551 + R+ R A+ G R Sbjct: 393 VIILGNRDERFRALANKTPEGKR 415
>Y1671_HAEIN (P44287) Hypothetical protein HI1671| Length = 416 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -2 Query: 111 PFPRSPVCQSTVCARIPSIHEQNFQACCPXCEDCLA 4 PF + C +PSI + N QA CP C LA Sbjct: 10 PFKILKCTECDACINVPSILQSNEQAECPRCHHLLA 45
>ALGD_PSESM (Q887P8) GDP-mannose 6-dehydrogenase (EC 1.1.1.132) (GMD)| Length = 438 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 123 RISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLS 302 R +T QNA V+S DTR + LG +A DD P + +AE+L+ Sbjct: 295 RSNTSQVQNAFDMVASYDTRKV----ALLGLSFKAGTDDLRE------SPLVELAEMLIG 344 Query: 303 RGF 311 +GF Sbjct: 345 KGF 347
>Y5204_STRCO (Q9FCI4) UPF0182 protein SCO5204| Length = 1000 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 228 DGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDA---LLAAHSRAEKA 398 +GDDT+ P T T P + A + F A K + ++ + Y +A L A RAE A Sbjct: 892 EGDDTTEPPPTSTNPTVREALSDAQKAFDAGQKALEQKDLAAYAEAQKDLEEALQRAEDA 951 Query: 399 K 401 + Sbjct: 952 Q 952 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,700,789 Number of Sequences: 219361 Number of extensions: 1567041 Number of successful extensions: 3993 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3975 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
