ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags24f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYSP_SALTY (P41031) Thiosulfate-binding protein precursor 29 7.4
2CYSP_ECOLI (P16700) Thiosulfate-binding protein precursor 29 7.4
3VL1_BPV3 (P50805) Major capsid protein L1 29 7.4
4ALA5_ARATH (Q9SGG3) Putative phospholipid-transporting ATPase 5 ... 29 7.4
5ZSWM2_HUMAN (Q8NEG5) Zinc finger SWIM domain-containing protein 2 29 9.6

>CYSP_SALTY (P41031) Thiosulfate-binding protein precursor|
          Length = 338

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 282 PPFHSRWMLST--DFLTIFPSHAGSGKQ 205
           PPF  +W      D LTI  SHAGS KQ
Sbjct: 45  PPFEQQWAKDNGGDKLTIKQSHAGSSKQ 72



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>CYSP_ECOLI (P16700) Thiosulfate-binding protein precursor|
          Length = 338

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 282 PPFHSRWMLST--DFLTIFPSHAGSGKQ 205
           PPF  +W      D LTI  SHAGS KQ
Sbjct: 45  PPFEQQWAKDNGGDKLTIKQSHAGSSKQ 72



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>VL1_BPV3 (P50805) Major capsid protein L1|
          Length = 510

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 90  WDNGYRITATAATLDQAAFILSIPRRKPNDETQETLRTSAFPS--QHVKEKWSKNLYL 257
           W+N   +TA  +T     F +S+ R KP+ E Q+T   + F    +HV E+W  +L L
Sbjct: 326 WNNQLFVTAVDSTRG-TNFTISVHRDKPSLEDQDTYTAAEFKHYLRHV-EEWEVSLVL 381



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>ALA5_ARATH (Q9SGG3) Putative phospholipid-transporting ATPase 5 (EC 3.6.3.1)|
           (Aminophospholipid flippase 5)
          Length = 1228

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  HVPKCWFLRPVVELDFLYPSEGIH 83
           H+PK W+LRP   +DF  P   I+
Sbjct: 331 HMPKMWYLRPGEPIDFTNPINPIY 354



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>ZSWM2_HUMAN (Q8NEG5) Zinc finger SWIM domain-containing protein 2|
          Length = 633

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 77  HPSTMG*WLSHHCNSCHIGPGCIY 148
           H   +  WL H CNSC IG   IY
Sbjct: 367 HRKCIDNWLFHKCNSCPIGGQVIY 390


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,743,479
Number of Sequences: 219361
Number of extensions: 1457483
Number of successful extensions: 2796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2795
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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