>RL9_ORYSA (P49210) 60S ribosomal protein L9|
          Length = 190

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLDF 109
           M+IPE +TV V+AK+++V GPRG LTRNFKHLNLDF
Sbjct: 10  MEIPEGLTVQVAAKVVTVEGPRGKLTRNFKHLNLDF 45

>RL9_ARATH (P49209) 60S ribosomal protein L9|
          Length = 194

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLDF 109
           MDIP+ VT+ V AK+I V GPRG L R+FKHLNLDF
Sbjct: 10  MDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDF 45

>RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated protein|
           GA)
          Length = 193

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLDF 109
           M+IP+ VT+ V+AK+I V GPRG L R+FKHLNLDF
Sbjct: 10  MNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDF 45

>RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)|
          Length = 191

 Score = 47.8 bits (112), Expect = 9e-06
 Identities = 18/36 (50%), Positives = 29/36 (80%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLDF 109
           ++IPE VTV + ++++ V GPRGTLT+N KH+++ F
Sbjct: 10  IEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF 45

>RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)|
          Length = 191

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 29/36 (80%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLDF 109
           +++PE VTV + ++++ V GPRGTLT+N KH+++ F
Sbjct: 10  IEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF 45

>RL9_SPOFR (Q963B7) 60S ribosomal protein L9|
          Length = 190

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 8   IPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           IPE +TV V +++++V GPRG L RNFKHL +D
Sbjct: 12  IPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVD 44

>RL9_HAECO (O02376) 60S ribosomal protein L9 (Fragment)|
          Length = 141

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +D P+ VT  V  +++ VTGPRGTL R+F+HL+++
Sbjct: 10  VDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHME 44

>RL9_DROME (P50882) 60S ribosomal protein L9|
          Length = 190

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +2

Query: 8   IPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           IP+++   V A+++++TG RGTL R+FKHL LD
Sbjct: 12  IPKDIKASVKARVVTITGTRGTLKRSFKHLALD 44

>RL9_ICTPU (Q90YW0) 60S ribosomal protein L9|
          Length = 192

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIP+ V V +  + +SV GPRG L R F H+NL+
Sbjct: 10  VDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLE 44

>RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A|
          Length = 190

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 28/35 (80%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           + IP+ VTV + A+ ++VTGPRGTL +N +H++++
Sbjct: 11  LTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIE 45

>RL9_RAT (P17077) 60S ribosomal protein L9|
          Length = 192

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIPE V + +  + + V GPRGTL R+F H+N++
Sbjct: 10  VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE 44

>RL9_MOUSE (P51410) 60S ribosomal protein L9|
          Length = 192

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIPE V + +  + + V GPRGTL R+F H+N++
Sbjct: 10  VDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVE 44

>RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9|
          Length = 192

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIPE V + +  + + V GPRGTL R+F H+N++
Sbjct: 10  VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE 44

>RL9_HUMAN (P32969) 60S ribosomal protein L9|
          Length = 192

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIPE V + +  + + V GPRGTL R+F H+N++
Sbjct: 10  VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE 44

>RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9|
          Length = 192

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           +DIPE V + +  + + V GPRGTL R+F H+N++
Sbjct: 10  VDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVE 44

>RL9_CAEEL (Q95Y90) 60S ribosomal protein L9|
          Length = 189

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +2

Query: 11  PEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           PE VT  V  +++ VTGPRGT+ ++F+HL+++
Sbjct: 13  PEGVTFTVKNRIVHVTGPRGTIRKDFRHLHME 44

>RL9B_SCHPO (O74905) 60S ribosomal protein L9-B|
          Length = 189

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 13/35 (37%), Positives = 26/35 (74%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           + IPE V+V + A++++V GPRG L +N + ++++
Sbjct: 11  LTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIE 45

>RL6_AERPE (Q9YF91) 50S ribosomal protein L6P|
          Length = 182

 Score = 34.7 bits (78), Expect = 0.077
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKH 94
           +++PE VTV +    + V+GP+G + R+F H
Sbjct: 11  VEVPEGVTVSIDGMRVKVSGPKGEVERDFSH 41

>RL6_BACST (P02391) 50S ribosomal protein L6 (BL10)|
          Length = 177

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTRNF 88
          ++IP  VTV V+   ++V GP+G LTR F
Sbjct: 8  IEIPAGVTVTVNGNTVTVKGPKGELTRTF 36

>RL6_STAS1 (Q49ZF3) 50S ribosomal protein L6|
          Length = 178

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV V    I+V GP+G L+R
Sbjct: 9  IDIPSDVTVSVEGNTITVKGPKGELSR 35

>RL6_STAHJ (Q4L899) 50S ribosomal protein L6|
          Length = 178

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTRNF 88
          +DIP +VTV       +V GP+G LTR F
Sbjct: 9  IDIPSDVTVTFDGHTATVKGPKGELTRTF 37

>RL6_STAAW (Q7A084) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_STAAS (Q6G786) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_STAAR (Q6GEJ8) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_STAAN (Q7A466) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_STAAM (Q99S36) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_STAAC (Q5HDX3) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L+R
Sbjct: 9  IDIPSDVTVTFDGNHVTVKGPKGELSR 35

>RL6_BACHD (Q9Z9J9) 50S ribosomal protein L6|
          Length = 178

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTRNF 88
          ++IP  VTV V+   ++V GP+G L R F
Sbjct: 9  VEIPSGVTVTVNGADVTVKGPKGELKRTF 37

>RK6_CYAPA (P14808) Cyanelle 50S ribosomal protein L6|
          Length = 179

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKH 94
           ++IP +VTV +  ++ SV GP+G L++   +
Sbjct: 9   INIPSQVTVSIKDQVFSVKGPKGELSKQIPY 39

>RL6_STAES (Q8CRH5) 50S ribosomal protein L6|
          Length = 178

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L R
Sbjct: 9  IDIPSDVTVTFDGSHVTVKGPKGELER 35

>RL6_STAEQ (Q5HM14) 50S ribosomal protein L6|
          Length = 178

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTR 82
          +DIP +VTV      ++V GP+G L R
Sbjct: 9  IDIPSDVTVTFDGSHVTVKGPKGELER 35

>RL6_BACSU (P46898) 50S ribosomal protein L6 (BL10)|
          Length = 178

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAK-MISVTGPRGTLTRNF 88
          ++IP +VTV ++    ++V GP+G LTR F
Sbjct: 8  LEIPSDVTVTLNDNNTVAVKGPKGELTRTF 37

>RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)|
          Length = 177

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   MDIPEEVTVXVSAKMISVTGPRGTLTRNFKHLNLD 106
           ++IP++VT  V    ++V GP G++TR   + ++D
Sbjct: 5   IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVD 39

>RL6_THEMA (Q9ZAE4) 50S ribosomal protein L6|
          Length = 184

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 8  IPEEVTVXVSAKMISVTGPRGTLTRNF 88
          +P+ VTV +   ++ V GP+G L++ F
Sbjct: 11 LPQGVTVEIKDNVVKVKGPKGELSQEF 37

>RL6_RICPR (Q9ZCS0) 50S ribosomal protein L6|
          Length = 177

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 8  IPEEVTVXVSAKMISVTGPRGTLTRNFK 91
          IPE V V ++   + ++GP+G L++ FK
Sbjct: 11 IPEGVKVGLNDLEVKISGPKGELSKTFK 38

>RM06_SCHPO (Q09865) Putative 60S ribosomal protein L6, mitochondrial precursor|
          Length = 213

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 8   IPEEVTVXVSAKMISVTGPRGTLTRNF-KHLNL 103
           +P+ +   +  + + +TGP GTL   F  +LNL
Sbjct: 41  VPKNIQFDLEGEQLQITGPHGTLNMRFPNYLNL 73

>RL6_SULSO (Q9UX91) 50S ribosomal protein L6P|
          Length = 181

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 2  MDIPEEVTVXVSAKMISVTGPRGTLTRNF 88
          ++IP+ V V +   +I + GP+G + ++F
Sbjct: 10 IEIPKNVVVDLKGSIIKIKGPKGEVVKDF 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.143    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,281,859
Number of Sequences: 219361
Number of extensions: 96821
Number of successful extensions: 288
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 80,573,946
effective HSP length: 11
effective length of database: 78,160,975
effective search space used: 1875863400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)