>gb|AY323481.1| Oryza sativa (japonica cultivar-group) ribosomal L9-like protein
           mRNA, complete cds
          Length = 797

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| |||||||||| |||||||||| | ||  | |||||| || |  |||||  |||
Sbjct: 89  gatggagatcccggagggggtgacggtgcaggtcgccgcgaaggtggtgacggtggaggg 148

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
            ||||| || |  ||||||||||||||||||||||||||||||||||||
Sbjct: 149 cccccgcgggaagctgacccgcaacttcaagcacctcaacctcgacttc 197

>gb|AY072817.1| Oryza sativa ARE1 mRNA, partial cds
          Length = 218

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| |||||||||| |||||||||| | ||  | |||||| || |  |||||  |||
Sbjct: 89  gatggagatcccggagggggtgacggtgcaggtcgccgcgaaggtggtgacggtggaggg 148

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
            ||||| || |  ||||||||||||||||||||||||||||||||||||
Sbjct: 149 cccccgcgggaagctgacccgcaacttcaagcacctcaacctcgacttc 197

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1        gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
                |||||| |||||||||| |||||||||| | ||  | |||||| || |  |||||  |||
Sbjct: 18585018 gatggagatcccggagggggtgacggtgcaggtcgccgcgaaggtggtgacggtggaggg 18584959

                                                                 
Query: 61       tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
                 ||||| || |  ||||||||||||||||||||||||||||||||||||
Sbjct: 18584958 cccccgcgggaagctgacccgcaacttcaagcacctcaacctcgacttc 18584910

>dbj|AK064936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P02, full
           insert sequence
          Length = 886

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| |||||||||| |||||||||| | ||  | |||||| || |  |||||  |||
Sbjct: 106 gatggagatcccggagggggtgacggtgcaggtcgccgcgaaggtggtgacggtggaggg 165

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
            ||||| || |  ||||||||||||||||||||||||||||||||||||
Sbjct: 166 cccccgcgggaagctgacccgcaacttcaagcacctcaacctcgacttc 214

>dbj|D29705.1|RICYK17 Oryza sativa mRNA, partial homologous to GAmRNA (cloneF)
          Length = 207

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 74  ctgacccgcaacttcaagcacctcaacctcgacttc 109
           ||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgacccgcaacttcaagcacctcaacctcgacttc 202

>dbj|D83527.1|RICGA3 Rice (YK426) mRNA, complete cds
          Length = 816

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 74  ctgacccgcaacttcaagcacctcaacctcgacttc 109
           ||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctgacccgcaacttcaagcacctcaacctcgacttc 210

>gb|BT016560.1| Zea mays clone Contig393 mRNA sequence
          Length = 747

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 77  acccgcaacttcaagcacctcaacctcgacttc 109
           |||||||||||||||||||||||||||||||||
Sbjct: 150 acccgcaacttcaagcacctcaacctcgacttc 182

>gb|BT016425.1| Zea mays clone Contig258 mRNA sequence
          Length = 1002

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 77  acccgcaacttcaagcacctcaacctcgacttc 109
           |||||||||||||||||||||||||||||||||
Sbjct: 159 acccgcaacttcaagcacctcaacctcgacttc 191

>gb|AY107309.1| Zea mays PCO113532 mRNA sequence
          Length = 1063

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 77  acccgcaacttcaagcacctcaacctcgacttc 109
           |||||||||||||||||||||||||||||||||
Sbjct: 256 acccgcaacttcaagcacctcaacctcgacttc 288

>gb|AY104547.1| Zea mays PCO113533 mRNA sequence
          Length = 927

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 77  acccgcaacttcaagcacctcaacctcgacttc 109
           |||||||||||||||||||||||||||||||||
Sbjct: 231 acccgcaacttcaagcacctcaacctcgacttc 263

>ref|XM_463799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 823

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 108 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 167

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
           |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 168 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 216

>ref|XM_506675.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.31
           mRNA
          Length = 914

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 113 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 172

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
           |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 173 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 221

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                          
Query: 1      gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
              |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 183329 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 183270

                                                               
Query: 61     tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
              |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 183269 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 183221

>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1435_F07
          Length = 139041

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                          
Query: 1      gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
              |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 132356 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 132297

                                                               
Query: 61     tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
              |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 132296 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 132248

>dbj|AK102186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086N17, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 113 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 172

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
           |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 173 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 221

>dbj|AK062502.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-A12, full
           insert sequence
          Length = 823

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggatatcccggaggaggtgacggtgaangtgtctgcgaagatgatctcggtgacggg 60
           |||||| ||||||  || |||||||||| | ||| | |||||| || |  |||||  |||
Sbjct: 108 gatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggaggg 167

                                                            
Query: 61  tccccggggcaccctgacccgcaacttcaagcacctcaacctcgacttc 109
           |||||| || |  ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 168 tccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttc 216

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 2      atggatatcccggaggaggtgacggtgaa 30
              ||||| |||| ||||||||||||||||||
Sbjct: 233567 atggagatcctggaggaggtgacggtgaa 233539

>emb|CR732637.2|CNS0GS8Y Tetraodon nigroviridis full-length cDNA
          Length = 1330

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 344 atcccggaggaggtgacggt 363

>emb|CR730462.2|CNS0GQKJ Tetraodon nigroviridis full-length cDNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 343 atcccggaggaggtgacggt 362

>emb|CR727111.2|CNS0GNZH Tetraodon nigroviridis full-length cDNA
          Length = 1062

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 343 atcccggaggaggtgacggt 362

>emb|CR724397.2|CNS0GLW3 Tetraodon nigroviridis full-length cDNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 345 atcccggaggaggtgacggt 364

>emb|CR724259.2|CNS0GLS9 Tetraodon nigroviridis full-length cDNA
          Length = 1010

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 303 atcccggaggaggtgacggt 322

>emb|CR723898.2|CNS0GLI8 Tetraodon nigroviridis full-length cDNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   atcccggaggaggtgacggt 27
           ||||||||||||||||||||
Sbjct: 343 atcccggaggaggtgacggt 362

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      ctgacccgcaacttcaagca 93
               ||||||||||||||||||||
Sbjct: 3728653 ctgacccgcaacttcaagca 3728672

>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     ctgacccgcaacttcaagc 92
              |||||||||||||||||||
Sbjct: 117011 ctgacccgcaacttcaagc 117029

>ref|XM_798979.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053402857.20) partial mRNA
          Length = 3159

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 9   tcccggaggaggtgacggtgaangtg 34
           |||||||||||| ||||||||| |||
Sbjct: 578 tcccggaggaggcgacggtgaatgtg 603

>emb|Z23068.1|BHV12US Bovine herpesvirus type 1 subtype 2 short unique region DNA
          Length = 10066

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 74   ctgacccgcaacttcaagc 92
            |||||||||||||||||||
Sbjct: 2947 ctgacccgcaacttcaagc 2965

>emb|X14060.1|LENIA Lycopersicon esculentum nia gene for nitrate reductase (EC 1.6.6.1)
          Length = 5309

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 87   tcaagcacctcaacctcga 105
            |||||||||||||||||||
Sbjct: 2805 tcaagcacctcaacctcga 2787

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     ccggaggaggtgacggtga 29
              |||||||||||||||||||
Sbjct: 202296 ccggaggaggtgacggtga 202278

>emb|Z98199.1|BHVUS12 Bovine herpesvirus 1 genomic US region
          Length = 8599

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 74   ctgacccgcaacttcaagc 92
            |||||||||||||||||||
Sbjct: 2777 ctgacccgcaacttcaagc 2795

>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence
          Length = 180886

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 35     tctgcgaagatgatctcggtgac 57
              ||||||||||||||| |||||||
Sbjct: 143665 tctgcgaagatgatcgcggtgac 143643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 466,702
Number of Sequences: 3902068
Number of extensions: 466702
Number of successful extensions: 29870
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29709
Number of HSP's gapped (non-prelim): 161
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)