Clone Information

BLAST Search Result

Clone Name	bags24e18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	5e-23
2	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	117	5e-23
3	emb\|BX000493.1\|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb...	117	5e-23
4	dbj\|AK067362.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	103	7e-19
5	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	2e-16
6	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	96	2e-16
7	emb\|BX000510.1\|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769...	96	2e-16
8	gb\|AC165262.2\| Mus musculus BAC clone RP23-89H5 from chromosome ...	44	0.58
9	gb\|AC154206.2\| Mus musculus BAC clone RP24-104P20 from 14, compl...	44	0.58
10	gb\|DQ349231.1\| Expression vector peTetOn/FKNF(PacI), complete se...	44	0.58
11	gb\|DQ349230.1\| Expression vector pe2TetOn/FKNF(PacI), complete s...	44	0.58
12	gb\|DQ349229.1\| Expression vector pe2TetOn(PacI), complete sequence	44	0.58
13	gb\|DQ349228.1\| Expression vector peTetOn(PacI), complete sequence	44	0.58
14	emb\|AL731783.10\| Mouse DNA sequence from clone RP23-124E18 on ch...	44	0.58
15	ref\|XM_795306.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	42	2.3
16	emb\|AL596129.27\| Mouse DNA sequence from clone RP23-294E23 on ch...	42	2.3
17	emb\|AL731829.10\| Mouse DNA sequence from clone RP23-383P24 on ch...	42	2.3
18	gb\|AC116389.12\| Mus musculus chromosome 7, clone RP23-21B1, comp...	40	9.1
19	gb\|AC168212.7\| Mus musculus chromosome 18, clone RP23-290N19, co...	40	9.1
20	ref\|XM_526886.1\| PREDICTED: Pan troglodytes similar to angiogeni...	40	9.1
21	ref\|NM_197818.1\| Oryza sativa (japonica cultivar-group) hypothet...	40	9.1
22	gb\|BC077897.1\| Xenopus laevis CD81 antigen (target of antiprolif...	40	9.1
23	ref\|XM_429067.1\| PREDICTED: Gallus gallus similar to Hypothetica...	40	9.1
24	ref\|XM_428910.1\| PREDICTED: Gallus gallus similar to Hypothetica...	40	9.1
25	ref\|XM_417472.1\| PREDICTED: Gallus gallus similar to ovulatory p...	40	9.1
26	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	9.1
27	gb\|AY500996.1\| Homo sapiens angiogenic factor VG5Q gene, complet...	40	9.1
28	gb\|AY500994.1\| Homo sapiens angiogenic factor VG5Q mRNA, complet...	40	9.1
29	gb\|AC008581.11\| Homo sapiens chromosome 5 clone CTC-564N23, comp...	40	9.1
30	gb\|BC073864.1\| Homo sapiens angiogenic factor with G patch and F...	40	9.1
31	gb\|BC032844.1\| Homo sapiens angiogenic factor with G patch and F...	40	9.1
32	emb\|AL596136.5\| Mouse DNA sequence from clone RP23-83I13 on chro...	40	9.1
33	emb\|CR859544.1\| Pongo pygmaeus mRNA; cDNA DKFZp459G1317 (from cl...	40	9.1
34	gb\|AC077693.19\| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen...	40	9.1
35	dbj\|AP007150.1\| Aspergillus oryzae RIB40 genomic DNA, SC009	40	9.1
36	gb\|AC096740.3\| Homo sapiens BAC clone RP11-326O23 from 4, comple...	40	9.1
37	gb\|AC051642.5\| Homo sapiens chromosome 8, clone RP11-583M2, comp...	40	9.1
38	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.1
39	dbj\|AB168508.1\| Macaca fascicularis testis cDNA clone: QtsA-1264...	40	9.1
40	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
41	ref\|NM_018046.3\| Homo sapiens angiogenic factor with G patch and...	40	9.1
42	gb\|AC102255.10\| Mus musculus chromosome 18, clone RP24-182H11, c...	40	9.1
43	gb\|AC164569.3\| Gallus gallus BAC clone CH261-138K23 from chromos...	40	9.1
44	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
45	emb\|AJ870974.1\| Pseudomonas syringae pv. phaseolicola PPHGI-1 ge...	40	9.1
46	gb\|AC140328.3\| Mus musculus BAC clone RP23-404L15 from 8, comple...	40	9.1
47	gb\|AC132383.5\| Mus musculus BAC clone RP23-434M19 from 10, compl...	40	9.1
48	emb\|AL807811.9\| Mouse DNA sequence from clone RP23-247I1 on chro...	40	9.1
49	gb\|AC147500.6\| Mus musculus BAC clone RP24-281C21 from chromosom...	40	9.1

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  117 bits (59), Expect = 5e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                          
Query: 244    tgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttgc 303
              |||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| ||
Sbjct: 478941 tgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctggc 478882

                                                                 
Query: 304    ccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
              ||| | |||||| ||| |||||||||||||||||||  |||||||||||||
Sbjct: 478881 ccagacagcttcatatcttacccagtgcctcccagtatctggttacacagg 478831



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                          
Query: 567    gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
              |||| ||||| ||||||||||||||||| | ||| || || ||||||||||||||||| |
Sbjct: 478134 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccgatgatattggatggcttc 478075

                                             
Query: 627    atcgcactcaaagtttacctgcaactgagga 657
              | |    |||||| |||||| ||||||||||
Sbjct: 478074 agcaggatcaaagcttacctccaactgagga 478044



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 518    cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
              |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 478580 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 478531

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  117 bits (59), Expect = 5e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                          
Query: 244    tgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttgc 303
              |||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| ||
Sbjct: 478941 tgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctggc 478882

                                                                 
Query: 304    ccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
              ||| | |||||| ||| |||||||||||||||||||  |||||||||||||
Sbjct: 478881 ccagacagcttcatatcttacccagtgcctcccagtatctggttacacagg 478831



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                          
Query: 567    gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
              |||| ||||| ||||||||||||||||| | ||| || || ||||||||||||||||| |
Sbjct: 478134 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccgatgatattggatggcttc 478075

                                             
Query: 627    atcgcactcaaagtttacctgcaactgagga 657
              | |    |||||| |||||| ||||||||||
Sbjct: 478074 agcaggatcaaagcttacctccaactgagga 478044



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 518    cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
              |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 478580 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 478531

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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score =  117 bits (59), Expect = 5e-23
 Identities = 98/111 (88%)
 Strand = Plus / Plus

                                                                         
Query: 244   tgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttgc 303
             |||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| ||
Sbjct: 91371 tgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctggc 91430

                                                                
Query: 304   ccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
             ||| | |||||| ||| |||||||||||||||||||  |||||||||||||
Sbjct: 91431 ccagacagcttcatatcttacccagtgcctcccagtatctggttacacagg 91481



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                         
Query: 567   gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
             |||| ||||| ||||||||||||||||| | ||| || || ||||||||||||||||| |
Sbjct: 92178 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccgatgatattggatggcttc 92237

                                            
Query: 627   atcgcactcaaagtttacctgcaactgagga 657
             | |    |||||| |||||| ||||||||||
Sbjct: 92238 agcaggatcaaagcttacctccaactgagga 92268



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 518   cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
             |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 91732 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 91781

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>dbj|AK067362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102P17, full
           insert sequence
          Length = 2130

 Score =  103 bits (52), Expect = 7e-19
 Identities = 118/140 (84%)
 Strand = Plus / Plus

                                                                       
Query: 518 cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaaggtctcgtagat 577
           |||||||||||||| || || || |||||||| |||||||| ||||||||||| ||||| 
Sbjct: 643 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaaggtcttgtagaa 702

                                                                       
Query: 578 cgtgctcggaaaactgtacatggttcggcagatgatattggatggctccatcgcactcaa 637
           ||||||||||||||||| | ||| || ||  |||||||||||||||| || |    ||||
Sbjct: 703 cgtgctcggaaaactgttcgtggctcagccaatgatattggatggcttcagcaggatcaa 762

                               
Query: 638 agtttacctgcaactgagga 657
           || |||||| ||||||||||
Sbjct: 763 agcttacctccaactgagga 782



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                       
Query: 243 ctgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttg 302
           ||||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct: 383 ctgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctgg 442

                                                              
Query: 303 cccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacag 353
           |||| |  || || ||| |||||||||||||||| ||  ||||||||||||
Sbjct: 443 cccagacggcctcatatcttacccagtgcctccctgtatctggttacacag 493

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                          
Query: 243    ctgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttg 302
              ||||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct: 556848 ctgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctgg 556789

                                                                  
Query: 303    cccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
              |||| |  || || ||| |||||||||||||||| ||  |||||||||||||
Sbjct: 556788 cccagacggcctcatatcttacccagtgcctccctgtatctggttacacagg 556737



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                          
Query: 567    gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
              |||| ||||| ||||||||||||||||| | ||| || ||  |||||||||||||||| |
Sbjct: 556021 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccaatgatattggatggcttc 555962

                                             
Query: 627    atcgcactcaaagtttacctgcaactgagga 657
              | |    |||||| |||||| ||||||||||
Sbjct: 555961 agcaggatcaaagcttacctccaactgagga 555931



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 518    cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
              |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 556477 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 556428

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                          
Query: 243    ctgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttg 302
              ||||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct: 556848 ctgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctgg 556789

                                                                  
Query: 303    cccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
              |||| |  || || ||| |||||||||||||||| ||  |||||||||||||
Sbjct: 556788 cccagacggcctcatatcttacccagtgcctccctgtatctggttacacagg 556737



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                          
Query: 567    gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
              |||| ||||| ||||||||||||||||| | ||| || ||  |||||||||||||||| |
Sbjct: 556021 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccaatgatattggatggcttc 555962

                                             
Query: 627    atcgcactcaaagtttacctgcaactgagga 657
              | |    |||||| |||||| ||||||||||
Sbjct: 555961 agcaggatcaaagcttacctccaactgagga 555931



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 518    cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
              |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 556477 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 556428

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>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Plus

                                                                         
Query: 243   ctgaagattcagaactcttcccctctgtcccagcattaaaccaagctgcgtctaatcttg 302
             ||||||||||| | ||||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct: 91995 ctgaagattcacagctcttcctctccgtcccagctttaaaccaagctgcgtcttatctgg 92054

                                                                 
Query: 303   cccaaatagcttcgtattttacccagtgcctcccagtgcctggttacacagg 354
             |||| |  || || ||| |||||||||||||||| ||  |||||||||||||
Sbjct: 92055 cccagacggcctcatatcttacccagtgcctccctgtatctggttacacagg 92106



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 567   gtctcgtagatcgtgctcggaaaactgtacatggttcggcagatgatattggatggctcc 626
             |||| ||||| ||||||||||||||||| | ||| || ||  |||||||||||||||| |
Sbjct: 92822 gtcttgtagaacgtgctcggaaaactgttcgtggctcagccaatgatattggatggcttc 92881

                                            
Query: 627   atcgcactcaaagtttacctgcaactgagga 657
             | |    |||||| |||||| ||||||||||
Sbjct: 92882 agcaggatcaaagcttacctccaactgagga 92912



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 518   cagatggcaccttttcgtgtttttcagaatggagcttcactatttcaagg 567
             |||||||||||||| || || || |||||||| |||||||| ||||||||
Sbjct: 92366 cagatggcacctttgcgcgtcttccagaatggggcttcactgtttcaagg 92415

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>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence
          Length = 201412

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 324    cccagtgcctcccagtgcctgg 345
              ||||||||||||||||||||||
Sbjct: 124188 cccagtgcctcccagtgcctgg 124209

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>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence
          Length = 167116

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 324    cccagtgcctcccagtgcctgg 345
              ||||||||||||||||||||||
Sbjct: 108830 cccagtgcctcccagtgcctgg 108809

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>gb|DQ349231.1| Expression vector peTetOn/FKNF(PacI), complete sequence
          Length = 11676

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 415  tgctcttcagacttcttctgcagagt 440
            |||||||||||| |||||||||||||
Sbjct: 6934 tgctcttcagacctcttctgcagagt 6959

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>gb|DQ349230.1| Expression vector pe2TetOn/FKNF(PacI), complete sequence
          Length = 11526

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 415  tgctcttcagacttcttctgcagagt 440
            |||||||||||| |||||||||||||
Sbjct: 6934 tgctcttcagacctcttctgcagagt 6959

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>gb|DQ349229.1| Expression vector pe2TetOn(PacI), complete sequence
          Length = 10049

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 415  tgctcttcagacttcttctgcagagt 440
            |||||||||||| |||||||||||||
Sbjct: 5457 tgctcttcagacctcttctgcagagt 5482

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>gb|DQ349228.1| Expression vector peTetOn(PacI), complete sequence
          Length = 10199

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 415  tgctcttcagacttcttctgcagagt 440
            |||||||||||| |||||||||||||
Sbjct: 5457 tgctcttcagacctcttctgcagagt 5482

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>emb|AL731783.10| Mouse DNA sequence from clone RP23-124E18 on chromosome 2, complete
              sequence
          Length = 207209

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 415    tgctcttcagacttcttctgcagagt 440
              |||||||||||| |||||||||||||
Sbjct: 173603 tgctcttcagacctcttctgcagagt 173628

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>ref|XM_795306.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC586579 (LOC586579), mRNA
          Length = 1108

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 242 gctgaagattcagaactcttc 262
           |||||||||||||||||||||
Sbjct: 431 gctgaagattcagaactcttc 451

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>emb|AL596129.27| Mouse DNA sequence from clone RP23-294E23 on chromosome 11 Contains the
              3' end of the Myh3 gene for embryonic skeletal muscle
              myosin heavy polypeptide 3, four novel genes
              (2310065F04Rik), the Myh2 gene for adult skeletal muscle
              myosin heavy polypeptide 2, the Myh1 gene for adult
              skeletal muscle myosin heavy polypeptide 1, the Myh4 gene
              for skeletal muscle  myosin heavy polypeptide 4 and the
              Myh8 gene for perinatal skeletal muscle myosin heavy
              polypeptide 8 (4832426G23Rik), complete sequence
          Length = 221384

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    gtcaatagggctgaagattcagaac 257
              |||||||||||||| ||||||||||
Sbjct: 130520 gtcaatagggctgatgattcagaac 130496

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>emb|AL731829.10| Mouse DNA sequence from clone RP23-383P24 on chromosome 4 Contains part
              of the Astn2 gene for astrotactin 2 and a CpG island,
              complete sequence
          Length = 199452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 321    ttacccagtgcctcccagtgcctgg 345
              ||||||||||||| |||||||||||
Sbjct: 154183 ttacccagtgcctaccagtgcctgg 154159

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>gb|AC116389.12| Mus musculus chromosome 7, clone RP23-21B1, complete sequence
          Length = 236139

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    cccagcattaaaccaagctg 290
              ||||||||||||||||||||
Sbjct: 181010 cccagcattaaaccaagctg 181029

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>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence
          Length = 197719

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cccagtgcctcccagtgcct 343
             ||||||||||||||||||||
Sbjct: 59631 cccagtgcctcccagtgcct 59612



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cccagtgcctcccagtgcct 343
             ||||||||||||||||||||
Sbjct: 59621 cccagtgcctcccagtgcct 59602



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cccagtgcctcccagtgcct 343
             ||||||||||||||||||||
Sbjct: 59611 cccagtgcctcccagtgcct 59592



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cccagtgcctcccagtgcct 343
             ||||||||||||||||||||
Sbjct: 59601 cccagtgcctcccagtgcct 59582

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>ref|XM_526886.1| PREDICTED: Pan troglodytes similar to angiogenic factor VG5Q;
           vasculogenesis gene on 5q; VG5Q protein (LOC471508),
           mRNA
          Length = 2145

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 gtaataaattccagtggaag 486
           ||||||||||||||||||||
Sbjct: 723 gtaataaattccagtggaag 704

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>ref|NM_197818.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0095C07.15), mRNA
          Length = 447

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 tgggactagtggatccatcg 165
           ||||||||||||||||||||
Sbjct: 78  tgggactagtggatccatcg 59

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>gb|BC077897.1| Xenopus laevis CD81 antigen (target of antiproliferative antibody
           1), mRNA (cDNA clone MGC:80726 IMAGE:5511992), complete
           cds
          Length = 1456

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 177 agccttcagcacagggagagcctt 200
           |||||| |||||||||||||||||
Sbjct: 505 agccttgagcacagggagagcctt 482

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>ref|XM_429067.1| PREDICTED: Gallus gallus similar to Hypothetical protein MGC64189
           (LOC431516), partial mRNA
          Length = 508

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 acccagtgcctcccagtgcc 342
           ||||||||||||||||||||
Sbjct: 434 acccagtgcctcccagtgcc 453

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>ref|XM_428910.1| PREDICTED: Gallus gallus similar to Hypothetical protein MGC64189
           (LOC431359), partial mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 cccagtgcctcccagtgcct 343
           ||||||||||||||||||||
Sbjct: 446 cccagtgcctcccagtgcct 465

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>ref|XM_417472.1| PREDICTED: Gallus gallus similar to ovulatory protein-2 precursor
           (LOC419300), mRNA
          Length = 1516

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cccagcatggagccttcagc 186
           ||||||||||||||||||||
Sbjct: 509 cccagcatggagccttcagc 528

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 495     aagaaacctcggaaatctcg 514
               ||||||||||||||||||||
Sbjct: 1658013 aagaaacctcggaaatctcg 1657994

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>gb|AY500996.1| Homo sapiens angiogenic factor VG5Q gene, complete cds
          Length = 40275

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   gtaataaattccagtggaag 486
             ||||||||||||||||||||
Sbjct: 12649 gtaataaattccagtggaag 12630

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>gb|AY500994.1| Homo sapiens angiogenic factor VG5Q mRNA, complete cds
          Length = 4049

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  gtaataaattccagtggaag 486
            ||||||||||||||||||||
Sbjct: 1024 gtaataaattccagtggaag 1005

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>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence
          Length = 198564

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   gtaataaattccagtggaag 486
             ||||||||||||||||||||
Sbjct: 54394 gtaataaattccagtggaag 54375

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>gb|BC073864.1| Homo sapiens angiogenic factor with G patch and FHA domains 1, mRNA
           (cDNA clone IMAGE:4498580)
          Length = 750

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 gtaataaattccagtggaag 486
           ||||||||||||||||||||
Sbjct: 632 gtaataaattccagtggaag 613

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>gb|BC032844.1| Homo sapiens angiogenic factor with G patch and FHA domains 1, mRNA
            (cDNA clone MGC:32998 IMAGE:5266978), complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  gtaataaattccagtggaag 486
            ||||||||||||||||||||
Sbjct: 1091 gtaataaattccagtggaag 1072

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>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the
              Rabep1 gene for rabaptin, RAB GTPase binding effector
              protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a
              ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene
              for nucleoporin 88, four novel genes, the C1qbp gene for
              complement component 1 q subcomponent binding protein, the
              Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33, a
               novel pseudogene, a CARD domain pseudogene and six CpG
              islands, complete sequence
          Length = 254116

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 39     ccgccgccacaccccccgctggagaaga 66
              ||||| || |||||||||||||||||||
Sbjct: 228948 ccgcccccccaccccccgctggagaaga 228975

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>emb|CR859544.1| Pongo pygmaeus mRNA; cDNA DKFZp459G1317 (from clone DKFZp459G1317)
          Length = 2064

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 gtaataaattccagtggaag 486
           ||||||||||||||||||||
Sbjct: 410 gtaataaattccagtggaag 391

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>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
             sequence
          Length = 187707

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tgggactagtggatccatcg 165
             ||||||||||||||||||||
Sbjct: 37701 tgggactagtggatccatcg 37720

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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      gagaagacagccgagtcgcc 79
               ||||||||||||||||||||
Sbjct: 1077636 gagaagacagccgagtcgcc 1077655

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>gb|AC096740.3| Homo sapiens BAC clone RP11-326O23 from 4, complete sequence
          Length = 196859

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cccagtgcctcccagtgcct 343
             ||||||||||||||||||||
Sbjct: 45279 cccagtgcctcccagtgcct 45260

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>gb|AC051642.5| Homo sapiens chromosome 8, clone RP11-583M2, complete sequence
          Length = 174445

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 385   acttccacctgtctcaacttctgg 408
             ||||||| ||||||||||||||||
Sbjct: 91932 acttccatctgtctcaacttctgg 91909

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 35      tctcccgccgccacaccccc 54
               ||||||||||||||||||||
Sbjct: 5027943 tctcccgccgccacaccccc 5027962



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tctcccgccgccacaccccc 54
              ||||||||||||||||||||
Sbjct: 184302 tctcccgccgccacaccccc 184283

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>dbj|AB168508.1| Macaca fascicularis testis cDNA clone: QtsA-12647, similar to human
           angiogenic factor VG5Q (VG5Q), mRNA, RefSeq: NM_018046.3
          Length = 2406

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 gtaataaattccagtggaag 486
           ||||||||||||||||||||
Sbjct: 630 gtaataaattccagtggaag 611

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      tgggactagtggatccatcg 165
                ||||||||||||||||||||
Sbjct: 22033157 tgggactagtggatccatcg 22033176

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>ref|NM_018046.3| Homo sapiens angiogenic factor with G patch and FHA domains 1
            (AGGF1), mRNA
          Length = 4480

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  gtaataaattccagtggaag 486
            ||||||||||||||||||||
Sbjct: 1083 gtaataaattccagtggaag 1064

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>gb|AC102255.10| Mus musculus chromosome 18, clone RP24-182H11, complete sequence
          Length = 195275

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cccagtgcctcccagtgcct 343
              ||||||||||||||||||||
Sbjct: 121571 cccagtgcctcccagtgcct 121552



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cccagtgcctcccagtgcct 343
              ||||||||||||||||||||
Sbjct: 121561 cccagtgcctcccagtgcct 121542



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cccagtgcctcccagtgcct 343
              ||||||||||||||||||||
Sbjct: 121551 cccagtgcctcccagtgcct 121532



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cccagtgcctcccagtgcct 343
              ||||||||||||||||||||
Sbjct: 121541 cccagtgcctcccagtgcct 121522

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>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete
              sequence
          Length = 248284

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cccagtgcctcccagtgcct 343
              ||||||||||||||||||||
Sbjct: 149333 cccagtgcctcccagtgcct 149314

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      tgggactagtggatccatcg 165
                ||||||||||||||||||||
Sbjct: 22044820 tgggactagtggatccatcg 22044839

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>emb|AJ870974.1| Pseudomonas syringae pv. phaseolicola PPHGI-1 genomic island, strain
             1302A
          Length = 113527

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   aagaaacctcggaaatctcg 514
             ||||||||||||||||||||
Sbjct: 64616 aagaaacctcggaaatctcg 64635

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>gb|AC140328.3| Mus musculus BAC clone RP23-404L15 from 8, complete sequence
          Length = 194350

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   tcagcacagggagagccttc 201
             ||||||||||||||||||||
Sbjct: 67356 tcagcacagggagagccttc 67337

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>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence
          Length = 212242

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   agggctgaagattcagaact 258
             ||||||||||||||||||||
Sbjct: 48360 agggctgaagattcagaact 48341

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>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete
              sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    gggccagatggcaccttttc 533
              ||||||||||||||||||||
Sbjct: 174139 gggccagatggcaccttttc 174120

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>gb|AC147500.6| Mus musculus BAC clone RP24-281C21 from chromosome 8, complete
            sequence
          Length = 185450

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  tcagcacagggagagccttc 201
            ||||||||||||||||||||
Sbjct: 1918 tcagcacagggagagccttc 1937


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,999,783
Number of Sequences: 3902068
Number of extensions: 4999783
Number of successful extensions: 92728
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92406
Number of HSP's gapped (non-prelim): 322
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result