>CHAC_ECOLI (P39163) Cation transport protein chaC|
          Length = 231

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +1

Query: 97  DVLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDS 276
           + +VF+  P    +  Y      + +A  IA ASGP G N  YLFS+E+ L  +  +DD 
Sbjct: 149 NAIVFIMDPR---HPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDG 205

Query: 277 IIVLADEVRKVLGRS 321
           +  L   V+K+L  +
Sbjct: 206 LNDLLVSVKKLLAEN 220

>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic|
           region
          Length = 232

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/51 (35%), Positives = 34/51 (66%)
 Frame = +1

Query: 106 VFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSNI 258
           V++ T D   N+ ++GP  +++ A+ IA + GP+G N +YL  +E+AL+ +
Sbjct: 160 VYIGTID---NEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQALAQM 207

>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)|
          Length = 524

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 354 WYVGAGNLLLCRPAQHLPHLIRKHNDRVVFMAYIGQ 247
           WYV  GN+   + A+H+ H++    +RVV+ A  G+
Sbjct: 285 WYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK 320

>DCE2_HUMAN (Q05329) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate|
           decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic
           acid decarboxylase)
          Length = 585

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 413 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 535
           F   K+ GMA L + +AF+S+H+   H  +++ A   G GT
Sbjct: 259 FPEVKEKGMAALPRLIAFTSEHS---HFSLKKGAAALGIGT 296

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
 Frame = +1

Query: 112  VSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMEKALSN--ISHEDDSI-- 279
            +S   P G +  LGPA +  + +Q   A GP G +R  L +  + LS+  ++ +   +  
Sbjct: 3515 LSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMG 3574

Query: 280  --IVLADEVRKVLGRSTEKKVTG---SDVPLKSHTPAVHISALPEGTV 408
              +V A + ++      +  + G       L SH+    +SA P G++
Sbjct: 3575 HRLVTAQQQQQQQQHQQQGSMAGLSHLQQSLMSHSGQPKLSAQPMGSL 3622

>DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa protein|
           downstream of CRK) (DOCK180) (Fragments)
          Length = 1027

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 497 ENVKSEYGQRKMPS-VSLIQPCRSSCYVETATVPSGRAEMCTAGVCDFNGTSEP 339
           E V+ +YG R MPS +   +  R    V + T+PS    +  A V  F+  S P
Sbjct: 768 EKVEKQYGVRTMPSGLDDRRGSRPRSMVRSFTMPSSSRPLSVASVSSFSSDSTP 821

>LYTA_STAAU (P24556) Autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine|
           amidase)
          Length = 481

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 61  YKDGNSLEPAVTDVLVFVSTPDPVGNKYYLGPAALEDMARQIAT 192
           Y  GN++  A+ +  V   T + +GNKYY G    + M    AT
Sbjct: 239 YVSGNTVWQALDESQVGWHTANQIGNKYYYGIEVCQSMGADNAT 282

>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type|
           ATPase subunit I 1)
          Length = 622

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 315 AQHLPHLIRKHNDRVVFMAYIGQCLLH*EQVVP 217
           A+ +  ++R H+DRV     I QC+ H E+  P
Sbjct: 83  AEAVEQIVRTHSDRVELAQRIAQCIAHLERCEP 115

>DCE2_RAT (Q05683) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate|
           decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic
           acid decarboxylase)
          Length = 585

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 413 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 535
           F   K+ GMA + + +AF+S+H+   H  +++ A   G GT
Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296

>DCE2_PIG (P48321) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate|
           decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic
           acid decarboxylase)
          Length = 585

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 413 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 535
           F   K+ GMA + + +AF+S+H+   H  +++ A   G GT
Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296

>DCE2_MOUSE (P48320) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate|
           decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic
           acid decarboxylase)
          Length = 585

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 413 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 535
           F   K+ GMA + + +AF+S+H+   H  +++ A   G GT
Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296

>DCE2_CANFA (Q4PRC2) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate|
           decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic
           acid decarboxylase)
          Length = 585

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 413 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 535
           F   K+ GMA + + +AF+S+H+   H  +++ A   G GT
Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296

>MRC1_SCHPO (Q9P7T4) Mediator of replication checkpoint protein 1 (DNA|
            replication checkpoint mediator mrc1)
          Length = 1019

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +1

Query: 163  LEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEVRKVLGRSTEKKV-- 336
            +E+   +I ++ GPN  +R YL       ++ ++  + ++ +   VRK++  S  +K+  
Sbjct: 886  MEEELSEIFSSGGPNVVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGD 945

Query: 337  --TGSDVPLKSH-TPAVHISALPEG 402
                + +  KS+ TP +  +  P+G
Sbjct: 946  LSNDNSMGAKSYKTPIISSTQRPQG 970


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,647,485
Number of Sequences: 219361
Number of extensions: 1981554
Number of successful extensions: 4937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4937
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)