>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic|
           region
          Length = 232

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 17/51 (33%), Positives = 33/51 (64%)
 Frame = +3

Query: 81  VFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMXKALSNI 233
           V++ T D   N+ ++GP  +++ A+ IA + GP+G N +YL  + +AL+ +
Sbjct: 160 VYIGTID---NEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQALAQM 207

>CHAC_ECOLI (P39163) Cation transport protein chaC|
          Length = 231

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 72  DVLVFVSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMXKALSNISHEDDS 251
           + +VF+  P    +  Y      + +A  IA ASGP G N  YLFS+ + L  +  +DD 
Sbjct: 149 NAIVFIMDPR---HPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDG 205

Query: 252 I 254
           +
Sbjct: 206 L 206

>LYTA_STAAU (P24556) Autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine|
           amidase)
          Length = 481

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 18  ASLWHFYKDGNSLEPAVTDVLVFVSTPDPVGNKYYLGPAALEDMARQIAT 167
           A + H Y  GN++  A+ +  V   T + +GNKYY G    + M    AT
Sbjct: 233 AGIAHSYVSGNTVWQALDESQVGWHTANQIGNKYYYGIEVCQSMGADNAT 282

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 87   VSTPDPVGNKYYLGPAALEDMARQIATASGPNGYNRDYLFSMXKALSN 230
            +S   P G +  LGPA +  + +Q   A GP G +R  L +  + LS+
Sbjct: 3515 LSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSS 3562

>SPTN2_HUMAN (O15020) Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta|
           chain 2) (Beta-III spectrin)
          Length = 2390

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  QXASLWHFYKDGNSLEPAVTDVLVFVSTPD 101
           Q ASL+ F  D N +E  + D L  VS+P+
Sbjct: 745 QAASLYQFQADANDMEAWLVDALRLVSSPE 774

>SPTN2_RAT (Q9QWN8) Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta|
           chain 2) (Beta-III spectrin) (SPNB-3) (Beta SpIII sigma
           1) (Spectrin-like protein GTRAP41)
          Length = 2388

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  QXASLWHFYKDGNSLEPAVTDVLVFVSTPD 101
           Q ASL+ F  D N +E  + D L  VS+P+
Sbjct: 745 QAASLYQFQADANDMEAWLVDALRLVSSPE 774

>CAN_SHIFL (P61518) Carbonic anhydrase 2 (EC 4.2.1.1)|
          Length = 220

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 167 CSNLPCHILQSS--RAKIVLVANWIRSGYEY*YIRHSWFQRISILVEMPQ 24
           C +  C  +Q++    ++ L+ NW+       +IR  WF+  S+L EMPQ
Sbjct: 96  CGHYGCGGVQAAVENPELGLINNWLL------HIRDIWFKHSSLLGEMPQ 139

>CAN_ECOLI (P61517) Carbonic anhydrase 2 (EC 4.2.1.1)|
          Length = 220

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 167 CSNLPCHILQSS--RAKIVLVANWIRSGYEY*YIRHSWFQRISILVEMPQ 24
           C +  C  +Q++    ++ L+ NW+       +IR  WF+  S+L EMPQ
Sbjct: 96  CGHYGCGGVQAAVENPELGLINNWLL------HIRDIWFKHSSLLGEMPQ 139

>TNR5_MOUSE (P27512) Tumor necrosis factor receptor superfamily member 5|
           precursor (CD40L receptor) (B-cell surface antigen CD40)
           (BP50) (CDw40)
          Length = 289

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 138 KQQGQDSTCCQLDQEWIRILIHPSQLVPENFHPC 37
           KQ   D  CC L Q   R+  H + L     HPC
Sbjct: 29  KQYLHDGQCCDLCQPGSRLTSHCTALEKTQCHPC 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,059,256
Number of Sequences: 219361
Number of extensions: 814391
Number of successful extensions: 2013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2013
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)