ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags24e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYLC_PONPY (Q5R614) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.... 49 1e-05
2SYLC_HUMAN (Q9P2J5) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.... 49 1e-05
3SYLC_MOUSE (Q8BMJ2) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.... 49 2e-05
4SYLC_CAEEL (Q09996) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine... 37 0.055
5SYLC_YEAST (P26637) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.... 32 1.8

>SYLC_PONPY (Q5R614) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)|
            (Leucine--tRNA ligase) (LeuRS)
          Length = 1176

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 35/139 (25%), Positives = 57/139 (41%)
 Frame = +1

Query: 160  IYVNEHYDGWKEQCLRVLQSNFDSQTCSFAPDEEINEALRNCFIDRESNFKQVQKLCMPF 339
            IYV ++Y  W+   L VL+ +F++       ++ I   L +         K+  K  MPF
Sbjct: 938  IYVAKNYPPWQHTTLSVLRKHFEANNRKLPDNKVIASELGSM-----PELKKYMKKVMPF 992

Query: 340  IRFKKDEARNVGPQALNLKLPFGXXXXXXXXXXXXRRQLGLEHVEVLSALDGAARAKAGK 519
            +   K+    +GP+ L+L+L F                L LEH+EV          K   
Sbjct: 993  VAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEV----------KFAS 1042

Query: 520  HASLLDKNPPSPGEPVAIF 576
             A    +    PG+P+ +F
Sbjct: 1043 EAEDKIREDCCPGKPLNVF 1061



to top

>SYLC_HUMAN (Q9P2J5) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)|
            (Leucine--tRNA ligase) (LeuRS)
          Length = 1176

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 35/139 (25%), Positives = 57/139 (41%)
 Frame = +1

Query: 160  IYVNEHYDGWKEQCLRVLQSNFDSQTCSFAPDEEINEALRNCFIDRESNFKQVQKLCMPF 339
            IYV ++Y  W+   L VL+ +F++       ++ I   L +         K+  K  MPF
Sbjct: 938  IYVAKNYPPWQHTTLSVLRKHFEANNGKLPDNKVIASELGSM-----PELKKYMKKVMPF 992

Query: 340  IRFKKDEARNVGPQALNLKLPFGXXXXXXXXXXXXRRQLGLEHVEVLSALDGAARAKAGK 519
            +   K+    +GP+ L+L+L F                L LEH+EV          K   
Sbjct: 993  VAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEV----------KFAS 1042

Query: 520  HASLLDKNPPSPGEPVAIF 576
             A    +    PG+P+ +F
Sbjct: 1043 EAEDKIREDCCPGKPLNVF 1061



to top

>SYLC_MOUSE (Q8BMJ2) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)|
            (Leucine--tRNA ligase) (LeuRS)
          Length = 1178

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 35/149 (23%), Positives = 61/149 (40%)
 Frame = +1

Query: 160  IYVNEHYDGWKEQCLRVLQSNFDSQTCSFAPDEEINEALRNCFIDRESNFKQVQKLCMPF 339
            IYV ++Y  W+   L  L+S+F++       ++ I   L +         K+  K  MPF
Sbjct: 940  IYVAKNYPVWQHITLTTLRSHFEANNGKLPDNKVIASELGSL-----PELKKYMKKVMPF 994

Query: 340  IRFKKDEARNVGPQALNLKLPFGXXXXXXXXXXXXRRQLGLEHVEVLSALDGAARAKAGK 519
            +   K+     GP+ L+L+L F                L LEH+EV  A +   +     
Sbjct: 995  VAMIKENMEKKGPRVLDLELEFDEQAVLMENIVYLTNSLELEHIEVKFASEAEDKV---- 1050

Query: 520  HASLLDKNPPSPGEPVAIFMSKQEFEVQI 606
                  +    PG+P+ +F ++    V +
Sbjct: 1051 ------REECCPGKPLNVFRTEPGVPVSL 1073



to top

>SYLC_CAEEL (Q09996) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 1186

 Score = 37.0 bits (84), Expect = 0.055
 Identities = 24/110 (21%), Positives = 44/110 (40%)
 Frame = +1

Query: 148  TVGLIYVNEHYDGWKEQCLRVLQSNFDSQTCSFAPDEEINEALRNCFIDRESNFKQVQKL 327
            T  +IYV + Y  W++  L +L+    +   +   ++ I++      I +E + K+  K 
Sbjct: 938  TEAVIYVAKEYPPWQKTILDILEKQAKANNGALPDNKAISQ-----LIGKEESLKKFAKK 992

Query: 328  CMPFIRFKKDEARNVGPQALNLKLPFGXXXXXXXXXXXXRRQLGLEHVEV 477
             MPF++  K+     G  AL    P                 L L+ V +
Sbjct: 993  AMPFVQMIKERFEQKGVSALASSSPVDQTSILNENIDFIMNALDLDRVTI 1042



to top

>SYLC_YEAST (P26637) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)|
            (Leucine--tRNA ligase) (LeuRS)
          Length = 1090

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
 Frame = +1

Query: 160  IYVNEHYDGWKEQCLRVLQSNFDSQTCSFAPDEEINEALRNCFIDRESNFKQVQKLCMPF 339
            + ++E +  W+ QC+ +++  F  QT       + N+ +R     +E       K  MPF
Sbjct: 950  LLISESFPEWQSQCVEIVRKLFSEQTL------DDNKKVREHIEPKE------MKRAMPF 997

Query: 340  IRFKKDEARNVGPQ-ALNLKLPFGXXXXXXXXXXXXRRQLGLEHVEVLSALDGAARAKAG 516
            I   K    N  P+     +L F             ++      +   SA+     AK G
Sbjct: 998  ISLLKQRLANEKPEDVFERELQFSEIDTVKAAARNVKKAAQALKIAEFSAISFPYGAKTG 1057

Query: 517  K 519
            K
Sbjct: 1058 K 1058


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,799,416
Number of Sequences: 219361
Number of extensions: 1719517
Number of successful extensions: 4280
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4277
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top