ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24d24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127M05, full insert sequence Length = 1487 Score = 232 bits (117), Expect = 7e-58 Identities = 147/157 (93%) Strand = Plus / Plus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 204 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 263 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggtagagatgctggagtacag 132 |||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||| ||||| Sbjct: 264 cggcctcggctcatggcagctcttccggaggcaggagaagattgagatgctggactacag 323 Query: 133 gacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||||||||||||||||| | ||||||||| Sbjct: 324 gacgcggaggctggagatggagcccattgcgtggaac 360 Score = 151 bits (76), Expect = 2e-33 Identities = 158/186 (84%) Strand = Plus / Plus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 408 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 467 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 468 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 527 Query: 331 gatacctcggccggctgagtctggcagtttgcagtcacctatccttgtgaatagagggtg 390 |||||| ||||| |||| |||||||| | | ||||||| ||||||||||||||||| Sbjct: 528 gataccccggcctagtgagcatggcagttcgtggccacctatacttgtgaatagagggtg 587 Query: 391 gattcc 396 | |||| Sbjct: 588 ggttcc 593
>dbj|AK061432.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H09, full insert sequence Length = 1192 Score = 232 bits (117), Expect = 7e-58 Identities = 147/157 (93%) Strand = Plus / Plus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 63 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggtagagatgctggagtacag 132 |||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||| ||||| Sbjct: 64 cggcctcggctcatggcagctcttccggaggcaggagaagattgagatgctggactacag 123 Query: 133 gacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||||||||||||||||| | ||||||||| Sbjct: 124 gacgcggaggctggagatggagcccattgcgtggaac 160 Score = 151 bits (76), Expect = 2e-33 Identities = 158/186 (84%) Strand = Plus / Plus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 208 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 267 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 268 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 327 Query: 331 gatacctcggccggctgagtctggcagtttgcagtcacctatccttgtgaatagagggtg 390 |||||| ||||| |||| |||||||| | | ||||||| ||||||||||||||||| Sbjct: 328 gataccccggcctagtgagcatggcagttcgtggccacctatacttgtgaatagagggtg 387 Query: 391 gattcc 396 | |||| Sbjct: 388 ggttcc 393
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 163 bits (82), Expect = 5e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5254805 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5254746 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggt 114 |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 5254745 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5254704 Score = 131 bits (66), Expect = 2e-27 Identities = 115/132 (87%) Strand = Plus / Minus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 5254495 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5254436 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 5254435 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5254376 Query: 331 gatacctcggcc 342 |||||| ||||| Sbjct: 5254375 gataccccggcc 5254364 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 116 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct: 5254596 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5254543 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Minus Query: 366 cacctatccttgtgaatagagggtggattcc 396 ||||||| |||||||||||||||||| |||| Sbjct: 5253796 cacctatacttgtgaatagagggtgggttcc 5253766
>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3 clone OSJNBa0021H20, complete sequence Length = 133079 Score = 163 bits (82), Expect = 5e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 78207 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 78148 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggt 114 |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 78147 cggcctcggctcatggcagctcttccggaggcaggagaaggt 78106 Score = 131 bits (66), Expect = 2e-27 Identities = 115/132 (87%) Strand = Plus / Minus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 77897 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 77838 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 77837 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 77778 Query: 331 gatacctcggcc 342 |||||| ||||| Sbjct: 77777 gataccccggcc 77766 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 116 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct: 77998 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 77945 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Minus Query: 366 cacctatccttgtgaatagagggtggattcc 396 ||||||| |||||||||||||||||| |||| Sbjct: 77198 cacctatacttgtgaatagagggtgggttcc 77168
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 163 bits (82), Expect = 5e-37 Identities = 97/102 (95%) Strand = Plus / Plus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1713 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 1772 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggt 114 |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1773 cggcctcggctcatggcagctcttccggaggcaggagaaggt 1814 Score = 131 bits (66), Expect = 2e-27 Identities = 115/132 (87%) Strand = Plus / Plus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 2023 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 2082 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 2083 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 2142 Query: 331 gatacctcggcc 342 |||||| ||||| Sbjct: 2143 gataccccggcc 2154 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 116 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct: 1922 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 1975 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Plus Query: 366 cacctatccttgtgaatagagggtggattcc 396 ||||||| |||||||||||||||||| |||| Sbjct: 2722 cacctatacttgtgaatagagggtgggttcc 2752
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 163 bits (82), Expect = 5e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 13 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 72 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5254020 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5253961 Query: 73 cggcctcggcacatggcagctcttccggcggcaggacaaggt 114 |||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 5253960 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5253919 Score = 131 bits (66), Expect = 2e-27 Identities = 115/132 (87%) Strand = Plus / Minus Query: 211 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 270 ||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| |||| Sbjct: 5253710 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5253651 Query: 271 ncctcgctcccggagcatctccggtgtgacggaaaatgggnattatgtgatcactccgtt 330 ||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||| || Sbjct: 5253650 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5253591 Query: 331 gatacctcggcc 342 |||||| ||||| Sbjct: 5253590 gataccccggcc 5253579 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 116 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 169 ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct: 5253811 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5253758 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Minus Query: 366 cacctatccttgtgaatagagggtggattcc 396 ||||||| |||||||||||||||||| |||| Sbjct: 5253011 cacctatacttgtgaatagagggtgggttcc 5252981
>gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, complete sequence Length = 214060 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 gtctggcagtttgcagtcacc 369 ||||||||||||||||||||| Sbjct: 42695 gtctggcagtttgcagtcacc 42675
>gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome 10, complete sequence Length = 135541 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 gtctggcagtttgcagtcacc 369 ||||||||||||||||||||| Sbjct: 77029 gtctggcagtttgcagtcacc 77049
>gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome 10, complete sequence Length = 204465 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 gtctggcagtttgcagtcacc 369 ||||||||||||||||||||| Sbjct: 187437 gtctggcagtttgcagtcacc 187417
>emb|CR376602.1| plasmid pFBAOT6 from Aeromonas punctata (Aeromonas caviae) HGB5, complete sequence Length = 84749 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 cggcgccatcaccttcggcctcggc 82 |||||||||| |||||||||||||| Sbjct: 66999 cggcgccatcgccttcggcctcggc 66975
>dbj|AK036589.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830138G20 product:cyclin-dependent kinase 2, full insert sequence Length = 3265 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 gtctggcagtttgcagtcacc 369 ||||||||||||||||||||| Sbjct: 3144 gtctggcagtttgcagtcacc 3164
>gb|AC007786.1|AC007786 Homo sapiens chromosome 19, BAC 41855 (CIT-B-32o4), complete sequence Length = 229061 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 cgaggagggaaggaggggggc 28 ||||||||||||||||||||| Sbjct: 41474 cgaggagggaaggaggggggc 41454
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 ctcttcctcttcgcccccggcgccatca 68 |||||||||||| || |||||||||||| Sbjct: 3216387 ctcttcctcttctccaccggcgccatca 3216360
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cggcgccatcaccttcggcc 77 |||||||||||||||||||| Sbjct: 89659 cggcgccatcaccttcggcc 89678
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cgccatcaccttcggcctcggcac 84 |||||||||||||||| ||||||| Sbjct: 2206784 cgccatcaccttcggcatcggcac 2206761
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 cgcccccggcgccatcacct 71 |||||||||||||||||||| Sbjct: 6176981 cgcccccggcgccatcacct 6176962
>emb|X94190.1|SCSPAAGEE S.coelicolor spaA gene Length = 2648 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cggcgccatcaccttcggcc 77 |||||||||||||||||||| Sbjct: 357 cggcgccatcaccttcggcc 376 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,544,751 Number of Sequences: 3902068 Number of extensions: 2544751 Number of successful extensions: 60741 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60555 Number of HSP's gapped (non-prelim): 184 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
