>SHY1_SCHPO (Q9Y810) Protein shy1 (SURF1-like protein)|
          Length = 290

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 46/139 (33%), Positives = 78/139 (56%)
 Frame = +1

Query: 37  LFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDPAVLEFRKI 216
           L A   +TF LGTWQ+ RR+ K+ ++   T RL+   +   +TV+    +D   LE+ ++
Sbjct: 43  LSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVT---EQDTKKLEWTRV 99

Query: 217 VCEGDFDTEKSVFLGPRSRSISGVTENGYYVITPLIPRPAESGSLQSPILVNRGWIPRAW 396
           +  G F  ++ + +GPR++      + GY+V+TP I    + G     ILVNRGWI R++
Sbjct: 100 LLRGVFCHDQEMLVGPRTKE----GQPGYHVVTPFI---LDDG---RRILVNRGWIARSF 149

Query: 397 RDKNIQDHQDLGETLVVKE 453
            +++ +D   L +  VV E
Sbjct: 150 AEQSSRDPSSLPKGPVVIE 168

>SURF1_FUGRU (O57593) Surfeit locus protein 1 (Fragment)|
          Length = 240

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
 Frame = +1

Query: 28  KLFLFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDPA---V 198
           K FL    A TFGLGTWQ+ RRQ K+E+++  T+    EP+         +  DPA    
Sbjct: 4   KWFLLLIPATTFGLGTWQVKRRQWKMELIDGLTKLTTAEPI--------PLPIDPAELSS 55

Query: 199 LEFRKIVCEGDFDTEKSVFLGPRS-----------RSISGVTENGYYVITPLIPRPAESG 345
           LE+R++   G +D  K +++ PRS             +S   E G  VITP         
Sbjct: 56  LEYRRVKMRGKYDHSKELYILPRSPVDPEKEAREAGRLSSSGETGANVITPF-----HVT 110

Query: 346 SLQSPILVNRGWIPR 390
            L   ILVNRG++P+
Sbjct: 111 DLGITILVNRGYVPK 125

>SURF1_RAT (Q9QXU2) Surfeit locus protein 1|
          Length = 306

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
 Frame = +1

Query: 10  EGGAWSKLFLFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRD 189
           E  ++ + FL    A  FGLGTWQ+ RR+ K++++     R+  EP+         +  D
Sbjct: 64  EDDSFLQWFLLFIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPI--------PLPAD 115

Query: 190 PAV---LEFRKIVCEGDFDTEKSVFLGPRS----------RSISGVTENGYYVITPLIPR 330
           P     LE+R +   G FD  K +++ PR+                TE+G YV+TP    
Sbjct: 116 PMELKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF--- 172

Query: 331 PAESGSLQSPILVNRGWIPR-AWRDKNIQDHQDLGETLVV 447
                 L   ILVNRG++PR     +  Q  Q LGE  +V
Sbjct: 173 --HCSDLGVTILVNRGFVPRKKVNPETRQQGQVLGEVDLV 210

>SHY1_YEAST (P53266) Protein SHY1|
          Length = 389

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/116 (30%), Positives = 60/116 (51%)
 Frame = +1

Query: 37  LFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDPAVLEFRKI 216
           +FA   I+F LGTWQ+ R + K +++     +L  EP+   ++ +  +  D    E+RK+
Sbjct: 77  MFAMPIISFYLGTWQVRRLKWKTKLIAACETKLTYEPIPLPKSFTPDMCED---WEYRKV 133

Query: 217 VCEGDFDTEKSVFLGPRSRSISGVTENGYYVITPLIPRPAESGSLQSPILVNRGWI 384
           +  G F   + +F+GPR ++     E GY++ TP I            +L+ RGWI
Sbjct: 134 ILTGHFLHNEEMFVGPRKKN----GEKGYFLFTPFI-----RDDTGEKVLIERGWI 180

>SURF1_MOUSE (P09925) Surfeit locus protein 1|
          Length = 306

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
 Frame = +1

Query: 10  EGGAWSKLFLFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRD 189
           E  ++ + FL    A  FGLGTWQ+ RR+ K++++     R+  EP+         +  D
Sbjct: 64  EDDSFLQWFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPI--------PLPAD 115

Query: 190 PAV---LEFRKIVCEGDFDTEKSVFLGPRS----------RSISGVTENGYYVITPLIPR 330
           P     LE+R +   G FD  K +++ PR+                TE+G +V+TP    
Sbjct: 116 PMELKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAHVVTPF--- 172

Query: 331 PAESGSLQSPILVNRGWIPR-AWRDKNIQDHQDLGETLVV 447
                 L   ILVNRG++PR     +  Q  Q LGE  +V
Sbjct: 173 --HCSDLGVTILVNRGFVPRKKVNPETRQKGQVLGEVDLV 210

>SURF1_CHICK (Q800L1) Surfeit locus protein 1|
          Length = 309

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = +1

Query: 19  AWSKLFLFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDP-- 192
           AW K  L       F LGTWQ+ RR+ K++++     RL  EP+         ++ DP  
Sbjct: 70  AWLKWGLLLVPLTAFCLGTWQIQRRKWKLDLIAQLASRLSSEPI--------PLTLDPME 121

Query: 193 -AVLEFRKIVCEGDFDTEKSVFLGPRS-----------RSISGVTENGYYVITPLIPRPA 336
              LE+R +   G FD  K +++ PRS             ++   ENG  VITP      
Sbjct: 122 LKELEYRPVKVRGHFDHSKELYILPRSLVDPEREAREAGKLTSHAENGANVITPFY---- 177

Query: 337 ESGSLQSPILVNRGWIPR 390
               L   ILVNRG++P+
Sbjct: 178 -CTELGVTILVNRGFVPK 194

>SURF1_DROME (Q9U4F3) SURF1-like protein|
          Length = 300

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
 Frame = +1

Query: 34  FLFAPGAITFGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDPAVLEFRK 213
           FL    A TFGLG WQ+ R+  K ++++   ++L   PVA  + ++     D A +E+R 
Sbjct: 66  FLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLSTAPVALPDDLT-----DLAQMEYRL 120

Query: 214 IVCEGDFDTEKSVFLGPRS-------RSISGV-----TENGYYVITPLIPRPAESGSLQS 357
           +   G F  +K + LGPRS        +  G+     + NGY ++TP      +      
Sbjct: 121 VKIRGRFLHDKEMRLGPRSLIRPDGVETQGGLFSQRDSGNGYLIVTPF-----QLADRDD 175

Query: 358 PILVNRGWIPR 390
            +LVNRGW+ R
Sbjct: 176 IVLVNRGWVSR 186

>SURF1_HUMAN (Q15526) Surfeit locus protein 1|
          Length = 300

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
 Frame = +1

Query: 61  FGLGTWQLFRRQDKVEMLEYRTRRLEMEPVAWNETVSSAVSRDPAV---LEFRKIVCEGD 231
           FGLGTWQ+ RR+ K+ ++     R+  EPV         +  DP     LE+R +   G 
Sbjct: 74  FGLGTWQVQRRKWKLNLIAELESRVLAEPV--------PLPADPMELKNLEYRPVKVRGC 125

Query: 232 FDTEKSVFLGPRSR-----------SISGVTENGYYVITPLIPRPAESGSLQSPILVNRG 378
           FD  K +++ PR+             IS  T++G YV+TP          L   ILVNRG
Sbjct: 126 FDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPF-----HCTDLGVTILVNRG 180

Query: 379 WIPR 390
           ++PR
Sbjct: 181 FVPR 184

>ATPG_OCEIH (Q8EM82) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 286

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 257 RKTDFSVSKS----PSHTIFRNSSTAGSRETAEETVSFHATGSISSLRVLYS 114
           RK    VSKS    P H  F     A  +E A ETV  +A G I  L ++Y+
Sbjct: 127 RKRGLPVSKSVLGVPDHPTF-----ADVKELASETVQMYADGDIDELNIIYN 173

>DPO3A_PSEAE (Q9HXZ1) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1173

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 211 KIVCEGDFDTEKSVFLGPRSR-SISGVTENGYYVITPLIPRPAESGSLQSPILVNRGWIP 387
           K +C  D         GP SR S+  +   GY  +T LI R    G     I++ R W+ 
Sbjct: 62  KPICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWVK 121

Query: 388 RA 393
            A
Sbjct: 122 EA 123

>SBCC_RHOCA (O68032) Nuclease sbcCD subunit C|
          Length = 1238

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
 Frame = +1

Query: 67  LGTWQLFRRQDKVE-MLEYRTRRL-EMEPVAWNETVSSAVSRDPAVL------EFRKIV- 219
           +  WQ  R +DKVE  L+   R L   E        + AVS   A L      EFR+ V 
Sbjct: 109 IARWQARRARDKVEGKLQTVARSLARAEDGQVLAAQTQAVSEQVAALTGLSYEEFRRTVL 168

Query: 220 -CEGDFDTEKSVFLGPRSRSISGVTENGYY 306
             +GDFD       G R+  +  VT  G Y
Sbjct: 169 LAQGDFDAFLRADTGERATLLEKVTGTGLY 198

>UTY_HUMAN (O14607) Ubiquitously transcribed Y chromosome tetratricopeptide|
           repeat protein (Ubiquitously transcribed TPR protein on
           the Y chromosome)
          Length = 1347

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = -3

Query: 254 KTDFSVSKSPSHTIFRNSSTAGSRETAEETVSFHATGSISSLRVLYSSISTLSCRRKSCH 75
           KTD SV+ SPS  I  +++T   + T + +++     S++SL   +S + T++       
Sbjct: 757 KTDHSVASSPSSAI--STATPSPKSTEQRSIN-----SVTSLNSPHSGLHTVNGEGLGKS 809

Query: 74  VPRPKVMAPGAKRKSFDHAPPS 9
               KV  P A  +S     PS
Sbjct: 810 QSSTKVDLPLASHRSTSQILPS 831

>EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1026

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 293 SVTPEMLRERGPRKTDFSVSKSPSHTIFRNSSTAGSRETAE 171
           S+TP+  RER P++T FS+   PS TI   SST  +   +E
Sbjct: 794 SLTPD--RERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSE 832

>YODT_BACSU (O34662) Probable aminotransferase yodT (EC 2.6.-.-)|
          Length = 444

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 606 RWNKYAGLLTSSDYSNNFYRRLYRFFNLWSRF 511
           RW+ Y G+   +   + FY R YRF +L  R+
Sbjct: 129 RWSSYHGITLGALSLSGFYERRYRFTHLIERY 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,114,167
Number of Sequences: 219361
Number of extensions: 1834145
Number of successful extensions: 4163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)