No.
Definition
Score (bits)
E Value
1 dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clon...
232
1e-57
2 dbj|AK061432.1| Oryza sativa (japonica cultivar-group) cDNA clon...
232
1e-57
3 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
163
9e-37
4 gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare...
163
9e-37
5 gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str...
163
9e-37
6 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
163
9e-37
7 gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, com...
42
2.1
8 gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome...
42
2.1
9 gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome...
42
2.1
10 emb|CR376602.1| plasmid pFBAOT6 from Aeromonas punctata (Aeromon...
42
2.1
11 dbj|AK036589.1| Mus musculus adult male bone cDNA, RIKEN full-le...
42
2.1
12 gb|AY259117.1| Homo sapiens defender against cell death 1 (DAD1)...
42
2.1
13 emb|AL160314.7|CNS01RH3 Human chromosome 14 DNA sequence BAC C-2...
42
2.1
14 gb|U58384.1|ORU58384 Oecomys roberti cytochrome b (cyt-b) gene, ...
42
2.1
15 ref|NM_119404.2| Arabidopsis thaliana glycine hydroxymethyltrans...
40
8.5
16 gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
40
8.5
17 gb|AC093712.2| Canis familiaris clone RP81-229G11, complete sequ...
40
8.5
18 gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete se...
40
8.5
19 emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ...
40
8.5
20 emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, ...
40
8.5
21 emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome 4, co...
40
8.5
22 emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC...
40
8.5
23 gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, compl...
40
8.5
24 dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ...
40
8.5
25 gb|AF375450.1| Arabidopsis thaliana AT4g32520/F8B4_220 mRNA, com...
40
8.5
26 gb|AC010477.8| Homo sapiens chromosome 5 clone CTD-2313D3, compl...
40
8.5
27 ref|NM_060299.2| Caenorhabditis elegans T20F10.2 (T20F10.2) mRNA...
40
8.5
28 emb|BX826426.1|CNS0A2HG Arabidopsis thaliana Full-length cDNA Co...
40
8.5
29 dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...
40
8.5
30 emb|X94190.1|SCSPAAGEE S.coelicolor spaA gene
40
8.5
31 gb|BC052873.1| Mus musculus cDNA clone IMAGE:30031607
40
8.5
32 emb|Z81594.1|CET20F10 Caenorhabditis elegans Cosmid T20F10, comp...
40
8.5
33 gb|U92813.1|HMU92813 Hirudo medicinalis tractin mRNA, complete cds
40
8.5
34 gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete seq...
40
8.5
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 163 bits (82), Expect = 9e-37
Identities = 97/102 (95%)
Strand = Plus / Minus
Query: 3 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5254805 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5254746
Query: 63 cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
|||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 5254745 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5254704
Score = 143 bits (72), Expect = 8e-31
Identities = 117/132 (88%)
Strand = Plus / Minus
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| ||||
Sbjct: 5254495 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5254436
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
|||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 5254435 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5254376
Query: 321 gatacctcggcc 332
|||||| |||||
Sbjct: 5254375 gataccccggcc 5254364
Score = 133 bits (67), Expect = 8e-28
Identities = 88/95 (92%)
Strand = Plus / Minus
Query: 524 agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
|||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 5253326 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 5253267
Query: 584 agcccagcatatttgttccacctaatgaacccagt 618
|||||||||||||||||||| ||||||||||||||
Sbjct: 5253266 agcccagcatatttgttccagctaatgaacccagt 5253232
Score = 83.8 bits (42), Expect = 6e-13
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 106 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5254596 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5254543
Score = 81.8 bits (41), Expect = 2e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 356 cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 5253796 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 5253737
Query: 416 accaccagg 424
| |||||||
Sbjct: 5253736 atcaccagg 5253728
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
|||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 5253704 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 5253649
>gb|AC146581.1 | Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
clone OSJNBa0021H20, complete sequence
Length = 133079
Score = 163 bits (82), Expect = 9e-37
Identities = 97/102 (95%)
Strand = Plus / Minus
Query: 3 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 78207 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 78148
Query: 63 cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
|||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 78147 cggcctcggctcatggcagctcttccggaggcaggagaaggt 78106
Score = 143 bits (72), Expect = 8e-31
Identities = 117/132 (88%)
Strand = Plus / Minus
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| ||||
Sbjct: 77897 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 77838
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
|||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 77837 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 77778
Query: 321 gatacctcggcc 332
|||||| |||||
Sbjct: 77777 gataccccggcc 77766
Score = 133 bits (67), Expect = 8e-28
Identities = 88/95 (92%)
Strand = Plus / Minus
Query: 524 agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
|||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 76728 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 76669
Query: 584 agcccagcatatttgttccacctaatgaacccagt 618
|||||||||||||||||||| ||||||||||||||
Sbjct: 76668 agcccagcatatttgttccagctaatgaacccagt 76634
Score = 83.8 bits (42), Expect = 6e-13
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 106 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 77998 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 77945
Score = 81.8 bits (41), Expect = 2e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 356 cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 77198 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 77139
Query: 416 accaccagg 424
| |||||||
Sbjct: 77138 atcaccagg 77130
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
|||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 77106 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 77051
>gb|AC115687.1 | Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0091J11, from chromosome 3, complete sequence
Length = 181163
Score = 163 bits (82), Expect = 9e-37
Identities = 97/102 (95%)
Strand = Plus / Plus
Query: 3 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1713 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 1772
Query: 63 cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
|||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 1773 cggcctcggctcatggcagctcttccggaggcaggagaaggt 1814
Score = 143 bits (72), Expect = 8e-31
Identities = 117/132 (88%)
Strand = Plus / Plus
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| ||||
Sbjct: 2023 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 2082
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
|||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 2083 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 2142
Query: 321 gatacctcggcc 332
|||||| |||||
Sbjct: 2143 gataccccggcc 2154
Score = 133 bits (67), Expect = 8e-28
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 524 agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
|||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 3192 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 3251
Query: 584 agcccagcatatttgttccacctaatgaacccagt 618
|||||||||||||||||||| ||||||||||||||
Sbjct: 3252 agcccagcatatttgttccagctaatgaacccagt 3286
Score = 83.8 bits (42), Expect = 6e-13
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 106 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1922 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 1975
Score = 81.8 bits (41), Expect = 2e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 356 cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 2722 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 2781
Query: 416 accaccagg 424
| |||||||
Sbjct: 2782 atcaccagg 2790
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
|||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 2814 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 2869
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 163 bits (82), Expect = 9e-37
Identities = 97/102 (95%)
Strand = Plus / Minus
Query: 3 agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5254020 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5253961
Query: 63 cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
|||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 5253960 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5253919
Score = 143 bits (72), Expect = 8e-31
Identities = 117/132 (88%)
Strand = Plus / Minus
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
||||||||||| ||||||||| ||||| ||||||||| ||||| ||| || ||| ||||
Sbjct: 5253710 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5253651
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
|||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 5253650 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5253591
Query: 321 gatacctcggcc 332
|||||| |||||
Sbjct: 5253590 gataccccggcc 5253579
Score = 133 bits (67), Expect = 8e-28
Identities = 88/95 (92%)
Strand = Plus / Minus
Query: 524 agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
|||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 5252541 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 5252482
Query: 584 agcccagcatatttgttccacctaatgaacccagt 618
|||||||||||||||||||| ||||||||||||||
Sbjct: 5252481 agcccagcatatttgttccagctaatgaacccagt 5252447
Score = 83.8 bits (42), Expect = 6e-13
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 106 gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5253811 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5253758
Score = 81.8 bits (41), Expect = 2e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 356 cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 5253011 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 5252952
Query: 416 accaccagg 424
| |||||||
Sbjct: 5252951 atcaccagg 5252943
Score = 63.9 bits (32), Expect = 6e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
|||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 5252919 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 5252864
>gb|AC133709.11 | Medicago truncatula clone mth2-7b3, complete sequence
Length = 138950
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 524 agattgaagaacctgtaaag 543
||||||||||||||||||||
Sbjct: 106066 agattgaagaacctgtaaag 106047
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,067,206
Number of Sequences: 3902068
Number of extensions: 5067206
Number of successful extensions: 90103
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89824
Number of HSP's gapped (non-prelim): 277
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)