ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags24d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
2dbj|AK061432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 163 9e-37
4gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare... 163 9e-37
5gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 163 9e-37
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
7gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, com... 42 2.1
8gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome... 42 2.1
9gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome... 42 2.1
10emb|CR376602.1| plasmid pFBAOT6 from Aeromonas punctata (Aeromon... 42 2.1
11dbj|AK036589.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 2.1
12gb|AY259117.1| Homo sapiens defender against cell death 1 (DAD1)... 42 2.1
13emb|AL160314.7|CNS01RH3 Human chromosome 14 DNA sequence BAC C-2... 42 2.1
14gb|U58384.1|ORU58384 Oecomys roberti cytochrome b (cyt-b) gene, ... 42 2.1
15ref|NM_119404.2| Arabidopsis thaliana glycine hydroxymethyltrans... 40 8.5
16gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 8.5
17gb|AC093712.2| Canis familiaris clone RP81-229G11, complete sequ... 40 8.5
18gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete se... 40 8.5
19emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 8.5
20emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, ... 40 8.5
21emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome 4, co... 40 8.5
22emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC... 40 8.5
23gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, compl... 40 8.5
24dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 8.5
25gb|AF375450.1| Arabidopsis thaliana AT4g32520/F8B4_220 mRNA, com... 40 8.5
26gb|AC010477.8| Homo sapiens chromosome 5 clone CTD-2313D3, compl... 40 8.5
27ref|NM_060299.2| Caenorhabditis elegans T20F10.2 (T20F10.2) mRNA... 40 8.5
28emb|BX826426.1|CNS0A2HG Arabidopsis thaliana Full-length cDNA Co... 40 8.5
29dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.5
30emb|X94190.1|SCSPAAGEE S.coelicolor spaA gene 40 8.5
31gb|BC052873.1| Mus musculus cDNA clone IMAGE:30031607 40 8.5
32emb|Z81594.1|CET20F10 Caenorhabditis elegans Cosmid T20F10, comp... 40 8.5
33gb|U92813.1|HMU92813 Hirudo medicinalis tractin mRNA, complete cds 40 8.5
34gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete seq... 40 8.5

>dbj|AK103392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127M05, full
           insert sequence
          Length = 1487

 Score =  232 bits (117), Expect = 1e-57
 Identities = 147/157 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 263

                                                                       
Query: 63  cggcctcggcacatggcagctcttccggcggcaggacaaggtagagatgctggagtacag 122
           |||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||| |||||
Sbjct: 264 cggcctcggctcatggcagctcttccggaggcaggagaagattgagatgctggactacag 323

                                                
Query: 123 gacgcggaggctggagatggagcccgtggcgtggaac 159
           ||||||||||||||||||||||||| | |||||||||
Sbjct: 324 gacgcggaggctggagatggagcccattgcgtggaac 360



 Score =  198 bits (100), Expect = 2e-47
 Identities = 193/224 (86%)
 Strand = Plus / Plus

                                                                       
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
           ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 408 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 467

                                                                       
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
           |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 468 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 527

                                                                       
Query: 321 gatacctcggccggctgagtctggcagtttgcagtcacctatccttgtgaatagagggtg 380
           |||||| |||||   ||||  |||||||| |  | ||||||| |||||||||||||||||
Sbjct: 528 gataccccggcctagtgagcatggcagttcgtggccacctatacttgtgaatagagggtg 587

                                                       
Query: 381 gattcctcgggcttggcgtgataaaaacatacaggaccaccagg 424
           | ||||||| | |||||||||||| ||| ||||||| |||||||
Sbjct: 588 ggttcctcgtgattggcgtgataagaacgtacaggatcaccagg 631



 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                       
Query: 523 gagattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgag 582
           ||||||||| |||||||||| |||||||||| |||| | ||||| |||||||||||||||
Sbjct: 736 gagattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgag 795

                                               
Query: 583 aagcccagcatatttgttccacctaatgaacccagt 618
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 796 aagcccagcatatttgttccagctaatgaacccagt 831



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
           |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 655 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 710



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>dbj|AK061432.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H09, full
           insert sequence
          Length = 1192

 Score =  232 bits (117), Expect = 1e-57
 Identities = 147/157 (93%)
 Strand = Plus / Plus

                                                                       
Query: 3   agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4   agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 63

                                                                       
Query: 63  cggcctcggcacatggcagctcttccggcggcaggacaaggtagagatgctggagtacag 122
           |||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||| |||||
Sbjct: 64  cggcctcggctcatggcagctcttccggaggcaggagaagattgagatgctggactacag 123

                                                
Query: 123 gacgcggaggctggagatggagcccgtggcgtggaac 159
           ||||||||||||||||||||||||| | |||||||||
Sbjct: 124 gacgcggaggctggagatggagcccattgcgtggaac 160



 Score =  196 bits (99), Expect = 6e-47
 Identities = 192/223 (86%)
 Strand = Plus / Plus

                                                                       
Query: 201 ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
           ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 208 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 267

                                                                       
Query: 261 gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
           |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 268 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 327

                                                                       
Query: 321 gatacctcggccggctgagtctggcagtttgcagtcacctatccttgtgaatagagggtg 380
           |||||| |||||   ||||  |||||||| |  | ||||||| |||||||||||||||||
Sbjct: 328 gataccccggcctagtgagcatggcagttcgtggccacctatacttgtgaatagagggtg 387

                                                      
Query: 381 gattcctcgggcttggcgtgataaaaacatacaggaccaccag 423
           | ||||||| | |||||||||||| ||| ||||||| ||||||
Sbjct: 388 ggttcctcgtgattggcgtgataagaacgtacaggatcaccag 430



 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                       
Query: 523 gagattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgag 582
           ||||||||| |||||||||| |||||||||| |||| | ||||| |||||||||||||||
Sbjct: 536 gagattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgag 595

                                               
Query: 583 aagcccagcatatttgttccacctaatgaacccagt 618
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 596 aagcccagcatatttgttccagctaatgaacccagt 631



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 448 aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
           |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 455 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 510



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  163 bits (82), Expect = 9e-37
 Identities = 97/102 (95%)
 Strand = Plus / Minus

                                                                           
Query: 3       agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
               ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5254805 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5254746

                                                         
Query: 63      cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
               |||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 5254745 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5254704



 Score =  143 bits (72), Expect = 8e-31
 Identities = 117/132 (88%)
 Strand = Plus / Minus

                                                                           
Query: 201     ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
               ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 5254495 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5254436

                                                                           
Query: 261     gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
               |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 5254435 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5254376

                           
Query: 321     gatacctcggcc 332
               |||||| |||||
Sbjct: 5254375 gataccccggcc 5254364



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                           
Query: 524     agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
               |||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 5253326 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 5253267

                                                  
Query: 584     agcccagcatatttgttccacctaatgaacccagt 618
               |||||||||||||||||||| ||||||||||||||
Sbjct: 5253266 agcccagcatatttgttccagctaatgaacccagt 5253232



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                     
Query: 106     gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
               ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5254596 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5254543



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                           
Query: 356     cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
               ||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 5253796 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 5253737

                        
Query: 416     accaccagg 424
               | |||||||
Sbjct: 5253736 atcaccagg 5253728



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 448     aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
               |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 5253704 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 5253649



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>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
             clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score =  163 bits (82), Expect = 9e-37
 Identities = 97/102 (95%)
 Strand = Plus / Minus

                                                                         
Query: 3     agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
             ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 78207 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 78148

                                                       
Query: 63    cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
             |||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 78147 cggcctcggctcatggcagctcttccggaggcaggagaaggt 78106



 Score =  143 bits (72), Expect = 8e-31
 Identities = 117/132 (88%)
 Strand = Plus / Minus

                                                                         
Query: 201   ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
             ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 77897 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 77838

                                                                         
Query: 261   gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
             |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 77837 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 77778

                         
Query: 321   gatacctcggcc 332
             |||||| |||||
Sbjct: 77777 gataccccggcc 77766



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 524   agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
             |||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 76728 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 76669

                                                
Query: 584   agcccagcatatttgttccacctaatgaacccagt 618
             |||||||||||||||||||| ||||||||||||||
Sbjct: 76668 agcccagcatatttgttccagctaatgaacccagt 76634



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                   
Query: 106   gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
             ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 77998 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 77945



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 356   cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
             ||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 77198 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 77139

                      
Query: 416   accaccagg 424
             | |||||||
Sbjct: 77138 atcaccagg 77130



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 448   aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
             |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 77106 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 77051



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>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score =  163 bits (82), Expect = 9e-37
 Identities = 97/102 (95%)
 Strand = Plus / Plus

                                                                        
Query: 3    agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
            ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1713 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 1772

                                                      
Query: 63   cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
            |||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 1773 cggcctcggctcatggcagctcttccggaggcaggagaaggt 1814



 Score =  143 bits (72), Expect = 8e-31
 Identities = 117/132 (88%)
 Strand = Plus / Plus

                                                                        
Query: 201  ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
            ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 2023 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 2082

                                                                        
Query: 261  gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
            |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 2083 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 2142

                        
Query: 321  gatacctcggcc 332
            |||||| |||||
Sbjct: 2143 gataccccggcc 2154



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 524  agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
            |||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 3192 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 3251

                                               
Query: 584  agcccagcatatttgttccacctaatgaacccagt 618
            |||||||||||||||||||| ||||||||||||||
Sbjct: 3252 agcccagcatatttgttccagctaatgaacccagt 3286



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                  
Query: 106  gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
            ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1922 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 1975



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 356  cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
            ||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 2722 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 2781

                     
Query: 416  accaccagg 424
            | |||||||
Sbjct: 2782 atcaccagg 2790



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                    
Query: 448  aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
            |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 2814 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 2869



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  163 bits (82), Expect = 9e-37
 Identities = 97/102 (95%)
 Strand = Plus / Minus

                                                                           
Query: 3       agggaaggaggggggcgcgtggtcgaagctcttcctcttcgcccccggcgccatcacctt 62
               ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5254020 agggaaggaggcgggcgcgtggtccaagctcttcctcttcgcccccggcgccatcacctt 5253961

                                                         
Query: 63      cggcctcggcacatggcagctcttccggcggcaggacaaggt 104
               |||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 5253960 cggcctcggctcatggcagctcttccggaggcaggagaaggt 5253919



 Score =  143 bits (72), Expect = 8e-31
 Identities = 117/132 (88%)
 Strand = Plus / Minus

                                                                           
Query: 201     ggagttccggaagatcgtgtgtgagggcgatttcgacacggagaagtccgtcttcctcgg 260
               ||||||||||| ||||||||| ||||| |||||||||  ||||| ||| || ||| ||||
Sbjct: 5253710 ggagttccggaggatcgtgtgcgagggtgatttcgacgaggagaggtcggtgttcgtcgg 5253651

                                                                           
Query: 261     gcctcgctcccggagcatctccggtgtgacggaaaatgggtattatgtgatcactccgtt 320
               |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 5253650 gcctcgctccaggagcatctctggtgtgacggagaatgggtattatgtggtcactccatt 5253591

                           
Query: 321     gatacctcggcc 332
               |||||| |||||
Sbjct: 5253590 gataccccggcc 5253579



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                           
Query: 524     agattgaagaacctgtaaagcctcctgtaaaagttattggagtaatccgaggaagtgaga 583
               |||||||| |||||||||| |||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 5252541 agattgaaaaacctgtaaaacctcctgtaagagttttgggagttatccgaggaagtgaga 5252482

                                                  
Query: 584     agcccagcatatttgttccacctaatgaacccagt 618
               |||||||||||||||||||| ||||||||||||||
Sbjct: 5252481 agcccagcatatttgttccagctaatgaacccagt 5252447



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                     
Query: 106     gagatgctggagtacaggacgcggaggctggagatggagcccgtggcgtggaac 159
               ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5253811 gagatgctggactacaggacgcggaggctggagatggagcccattgcgtggaac 5253758



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                           
Query: 356     cacctatccttgtgaatagagggtggattcctcgggcttggcgtgataaaaacatacagg 415
               ||||||| |||||||||||||||||| ||||||| | |||||||||||| ||| ||||||
Sbjct: 5253011 cacctatacttgtgaatagagggtgggttcctcgtgattggcgtgataagaacgtacagg 5252952

                        
Query: 416     accaccagg 424
               | |||||||
Sbjct: 5252951 atcaccagg 5252943



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 448     aaagaggccgataaaaagacagatgaaaaaggtacttggtggaaattgtggtctaa 503
               |||||||| |||||||||||||||| ||||||| | |||||||| || ||||||||
Sbjct: 5252919 aaagaggctgataaaaagacagatggaaaaggttcatggtggaagttttggtctaa 5252864



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>gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, complete sequence
          Length = 214060

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 339   gtctggcagtttgcagtcacc 359
             |||||||||||||||||||||
Sbjct: 42695 gtctggcagtttgcagtcacc 42675



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>gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome 10, complete sequence
          Length = 135541

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 339   gtctggcagtttgcagtcacc 359
             |||||||||||||||||||||
Sbjct: 77029 gtctggcagtttgcagtcacc 77049



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>gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome 10, complete sequence
          Length = 204465

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 339    gtctggcagtttgcagtcacc 359
              |||||||||||||||||||||
Sbjct: 187437 gtctggcagtttgcagtcacc 187417



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>emb|CR376602.1| plasmid pFBAOT6 from Aeromonas punctata (Aeromonas caviae) HGB5,
             complete sequence
          Length = 84749

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    cggcgccatcaccttcggcctcggc 72
             |||||||||| ||||||||||||||
Sbjct: 66999 cggcgccatcgccttcggcctcggc 66975



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>dbj|AK036589.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830138G20 product:cyclin-dependent kinase
            2, full insert sequence
          Length = 3265

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 339  gtctggcagtttgcagtcacc 359
            |||||||||||||||||||||
Sbjct: 3144 gtctggcagtttgcagtcacc 3164



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>gb|AY259117.1| Homo sapiens defender against cell death 1 (DAD1) gene, complete cds
          Length = 26315

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   accttggtgaaactttagttg 445
             |||||||||||||||||||||
Sbjct: 21946 accttggtgaaactttagttg 21966



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>emb|AL160314.7|CNS01RH3 Human chromosome 14 DNA sequence BAC C-2555K7 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 208953

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   accttggtgaaactttagttg 445
             |||||||||||||||||||||
Sbjct: 37106 accttggtgaaactttagttg 37086



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>gb|U58384.1|ORU58384 Oecomys roberti cytochrome b (cyt-b) gene, mitochondrial gene
           encoding mitochondrial protein, light strand sequence,
           partial cds
          Length = 801

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 457 gataaaaagacagatgaaaaa 477
           |||||||||||||||||||||
Sbjct: 288 gataaaaagacagatgaaaaa 268



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>ref|NM_119404.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT4G32520 mRNA,
            complete cds
          Length = 1924

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  aaaagacagatgaaaaaggt 480
            ||||||||||||||||||||
Sbjct: 1811 aaaagacagatgaaaaaggt 1792



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 31      ctcttcctcttcgcccccggcgccatca 58
               |||||||||||| || ||||||||||||
Sbjct: 3216387 ctcttcctcttctccaccggcgccatca 3216360



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>gb|AC093712.2| Canis familiaris clone RP81-229G11, complete sequence
          Length = 133924

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 462   aaagacagatgaaaaaggtacttg 485
             ||||||||||||| ||||||||||
Sbjct: 62747 aaagacagatgaataaggtacttg 62770



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>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence
          Length = 138948

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   agattgaagaacctgtaaag 543
             ||||||||||||||||||||
Sbjct: 32884 agattgaagaacctgtaaag 32903



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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    cggcgccatcaccttcggcc 67
             ||||||||||||||||||||
Sbjct: 89659 cggcgccatcaccttcggcc 89678



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>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77
          Length = 197252

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    aaaagacagatgaaaaaggt 480
              ||||||||||||||||||||
Sbjct: 103586 aaaagacagatgaaaaaggt 103605



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>emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome 4, cosmid clone L23H3 (ESSA
            project)
          Length = 36270

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  aaaagacagatgaaaaaggt 480
            ||||||||||||||||||||
Sbjct: 5418 aaaagacagatgaaaaaggt 5437



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>emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC clone F8B4 (ESSA project)
          Length = 93257

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   aaaagacagatgaaaaaggt 480
             ||||||||||||||||||||
Sbjct: 89869 aaaagacagatgaaaaaggt 89888



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>gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, complete sequence
          Length = 171025

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caccaggaccttggtgaaac 437
            ||||||||||||||||||||
Sbjct: 3069 caccaggaccttggtgaaac 3050



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 51      cgccatcaccttcggcctcggcac 74
               |||||||||||||||| |||||||
Sbjct: 2206784 cgccatcaccttcggcatcggcac 2206761



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>gb|AF375450.1| Arabidopsis thaliana AT4g32520/F8B4_220 mRNA, complete cds
          Length = 1900

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  aaaagacagatgaaaaaggt 480
            ||||||||||||||||||||
Sbjct: 1811 aaaagacagatgaaaaaggt 1792



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>gb|AC010477.8| Homo sapiens chromosome 5 clone CTD-2313D3, complete sequence
          Length = 130888

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   caccaggaccttggtgaaac 437
             ||||||||||||||||||||
Sbjct: 53159 caccaggaccttggtgaaac 53140



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>ref|NM_060299.2| Caenorhabditis elegans T20F10.2 (T20F10.2) mRNA, complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 519 tccagagattgaagaacctg 538
           ||||||||||||||||||||
Sbjct: 809 tccagagattgaagaacctg 828



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>emb|BX826426.1|CNS0A2HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB25ZE02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1797

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  aaaagacagatgaaaaaggt 480
            ||||||||||||||||||||
Sbjct: 1743 aaaagacagatgaaaaaggt 1724



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      cgcccccggcgccatcacct 61
               ||||||||||||||||||||
Sbjct: 6176981 cgcccccggcgccatcacct 6176962



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>emb|X94190.1|SCSPAAGEE S.coelicolor spaA gene
          Length = 2648

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  cggcgccatcaccttcggcc 67
           ||||||||||||||||||||
Sbjct: 357 cggcgccatcaccttcggcc 376



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>gb|BC052873.1| Mus musculus cDNA clone IMAGE:30031607
          Length = 4566

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 565  gtaatccgaggaagtgagaa 584
            ||||||||||||||||||||
Sbjct: 2960 gtaatccgaggaagtgagaa 2941



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>emb|Z81594.1|CET20F10 Caenorhabditis elegans Cosmid T20F10, complete sequence
          Length = 37108

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   tccagagattgaagaacctg 538
             ||||||||||||||||||||
Sbjct: 28264 tccagagattgaagaacctg 28283



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>gb|U92813.1|HMU92813 Hirudo medicinalis tractin mRNA, complete cds
          Length = 6164

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  caggaccaccaggaccttgg 431
            ||||||||||||||||||||
Sbjct: 4730 caggaccaccaggaccttgg 4711



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>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence
          Length = 138950

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    agattgaagaacctgtaaag 543
              ||||||||||||||||||||
Sbjct: 106066 agattgaagaacctgtaaag 106047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,067,206
Number of Sequences: 3902068
Number of extensions: 5067206
Number of successful extensions: 90103
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89824
Number of HSP's gapped (non-prelim): 277
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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