| Clone Name | bags24d22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478301.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1267 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 104 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 163 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 164 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 223 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 224 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 283 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 284 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 343 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 344 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 403 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 404 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 463 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 464 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 523 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 524 ataaaacactgaagcttctgaagtactggacctggcaat 562
>ref|XM_507365.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaat 587
>ref|XM_506358.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaat 587
>dbj|AK104035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G11, full insert sequence Length = 1268 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 104 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 163 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 164 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 223 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 224 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 283 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 284 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 343 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 344 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 403 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 404 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 463 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 464 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 523 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 524 ataaaacactgaagcttctgaagtactggacctggcaat 562
>dbj|AK103102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118N22, full insert sequence Length = 1292 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaat 587
>dbj|AK068687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160E09, full insert sequence Length = 1292 Score = 490 bits (247), Expect = e-135 Identities = 406/459 (88%) Strand = Plus / Plus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattga 418 |||||| |||| |||||||| || || ||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 419 tgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaaggga 478 |||||||||| || ||||||||||| ||||| ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 479 gggtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagc 538 |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 539 acaagacacttaagcttctgaagtactggacctggcaat 577 | || ||||| |||||||||||||||||||||||||||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaat 587
>gb|AY596590.1| Saccharum officinarum clone SCJFLR1013H05, complete sequence Length = 1413 Score = 410 bits (207), Expect = e-111 Identities = 390/451 (86%) Strand = Plus / Minus Query: 127 gggatggatcttacgaaaatggatcctccaactcttaccctccttggagcagcttgttgt 186 ||||||||||| | ||||||||||| ||||||| ||||||||||| |||||| ||||| Sbjct: 1238 gggatggatctaagtaaaatggatcccgcaactctgaccctccttggggcagctggttgt 1179 Query: 187 gtaatgttgtctatgcatttcacaatacagctggtatcacagcatcttttttattggaaa 246 |||||| || ||||||||||||| | || |||| ||||| ||||| || ||||||||| Sbjct: 1178 gtaatgctgactatgcatttcactgtgcaattggtgtcacaacatctcttctattggaaa 1119 Query: 247 aatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgtatgctatg 306 || ||||| |||||||| |||||||| ||||| ||||| ||| ||||| | |||||||| Sbjct: 1118 aaccccaaggagcagaaagctatacttattattgtgctaatggctccactatatgctatc 1059 Query: 307 acttcctttgctggtcttctggatattaagggaagcaaaacgttttttacatgcttggag 366 ||||||| | |||||||| ||||| |||| ||||| || ||||| |||| |||||| Sbjct: 1058 tcttccttcgtgggtcttcttgatatccagggtagcaagacatttttcacattcttggat 999 Query: 367 tctgttaaagaatgttatgaagcactggttattgctaagtttctggcattgatgtacagc 426 ||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||| Sbjct: 998 gctgttaaagaatgctatgaggcactggtgattgctaagtttatggcattgatgtacagc 939 Query: 427 tacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagggtgctt 486 ||||| |||||||| ||||| || ||||| || |||||||||||||||||||||| |||| Sbjct: 938 tacttgaatatatccatcagcaagaacatagtccctgatgaaatcaaagggagggagctt 879 Query: 487 catcattctttccctgtttctcttttcctgccccgtaatgttcggttggagcacaagaca 546 |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct: 878 catcattccttccctgtttctcttttcctgccccgcaatgtccgattggagcacaagaca 819 Query: 547 cttaagcttctgaagtactggacctggcaat 577 | |||||||||||||| ||||||||||||| Sbjct: 818 ttaaagcttctgaagtattggacctggcaat 788
>gb|AY103628.1| Zea mays PCO109231 mRNA sequence Length = 1907 Score = 398 bits (201), Expect = e-108 Identities = 393/457 (85%) Strand = Plus / Plus Query: 121 ttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcagct 180 ||||| ||||||||||| | ||||||||||| ||||| ||||||||||| |||||| Sbjct: 208 ttcccggggatggatctaagtaaaatggatcccgggactctgaccctccttggggcagct 267 Query: 181 tgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatcttttttat 240 ||||||||||| || ||||||||||||| | || |||| ||||| ||||| || ||| Sbjct: 268 ggttgtgtaatgctgactatgcatttcactgtgcaattggtgtcacaacatctcttctat 327 Query: 241 tggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgtat 300 |||||||| ||||| |||||||| || ||||| ||||| ||||||||| ||||| | || Sbjct: 328 tggaaaaaccccaaggagcagaaagccatacttattattgtgctgatggctccactatac 387 Query: 301 gctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacatgc 360 ||||| ||||||| | |||||||| ||||| |||| ||||| || ||||| |||| | Sbjct: 388 gctatctcttccttcgtgggtcttcttgatatccagggtagcaagacatttttcacattc 447 Query: 361 ttggagtctgttaaagaatgttatgaagcactggttattgctaagtttctggcattgatg 420 || || ||||||||||||| ||||| |||||||| |||||||||||| ||||||||||| Sbjct: 448 ttagatgctgttaaagaatgctatgaggcactggtgattgctaagtttatggcattgatg 507 Query: 421 tacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagg 480 ||||||||||| |||||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 508 tacagctacttgaatatatctatcagcaagaacatagtccctgatgaaatcaaagggagg 567 Query: 481 gtgcttcatcattctttccctgtttctcttttcctgccccgtaatgttcggttggagcac 540 |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 568 gtgcttcatcattccttccctgtttctcttttcctgccccgcaatgtccgattggagcac 627 Query: 541 aagacacttaagcttctgaagtactggacctggcaat 577 |||||| | |||||||||||||| ||||||||||||| Sbjct: 628 aagacattgaagcttctgaagtattggacctggcaat 664
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 264 bits (133), Expect = 3e-67 Identities = 241/277 (87%) Strand = Plus / Minus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 19110293 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 19110234 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 19110233 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 19110174 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 19110173 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 19110114 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 19110113 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 19110054 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggt 395 |||||| |||| |||||||| || || |||||||| Sbjct: 19110053 tcttggatgctgtcaaagaatgctacgaggcactggt 19110017 Score = 153 bits (77), Expect = 8e-34 Identities = 110/121 (90%) Strand = Plus / Minus Query: 396 tattgctaagtttctggcattgatgtacagctacttaaatatatctatcagtaaaaacat 455 ||||||||||||| ||||| ||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 19109937 tattgctaagtttatggcactgatgtacagctatttgaatatatctattagtaagaacat 19109878 Query: 456 cgtacctgatgaaatcaaagggagggtgcttcatcattctttccctgtttctcttttcct 515 || |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 19109877 agttcctgatgagatcaaagggagggtgcttcatcattccttccctgtttcccttttcct 19109818 Query: 516 g 516 | Sbjct: 19109817 g 19109817 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 516 gccccgtaatgttcggttggagcacaagacacttaagcttctgaagtactggacctggca 575 |||||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 19109148 gccccgcaatgttcgattggagcataaaacactgaagcttctgaagtactggacctggca 19109089 Query: 576 at 577 || Sbjct: 19109088 at 19109087
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 264 bits (133), Expect = 3e-67 Identities = 241/277 (87%) Strand = Plus / Minus Query: 119 tgttccctgggatggatcttacgaaaatggatcctccaactcttaccctccttggagcag 178 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 33688 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 33629 Query: 179 cttgttgtgtaatgttgtctatgcatttcacaatacagctggtatcacagcatctttttt 238 | || ||||||||| | || |||||||| ||| ||||| |||| || ||||||||||| | Sbjct: 33628 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 33569 Query: 239 attggaaaaatcccaaagagcagaaggctatactcattatagtgctgatgcctccattgt 298 ||||||| |||||||| ||||||||||||||||| ||||| || || ||| |||| || | Sbjct: 33568 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 33509 Query: 299 atgctatgacttcctttgctggtcttctggatattaagggaagcaaaacgttttttacat 358 ||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||| || | Sbjct: 33508 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 33449 Query: 359 gcttggagtctgttaaagaatgttatgaagcactggt 395 |||||| |||| |||||||| || || |||||||| Sbjct: 33448 tcttggatgctgtcaaagaatgctacgaggcactggt 33412 Score = 153 bits (77), Expect = 8e-34 Identities = 110/121 (90%) Strand = Plus / Minus Query: 396 tattgctaagtttctggcattgatgtacagctacttaaatatatctatcagtaaaaacat 455 ||||||||||||| ||||| ||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 33332 tattgctaagtttatggcactgatgtacagctatttgaatatatctattagtaagaacat 33273 Query: 456 cgtacctgatgaaatcaaagggagggtgcttcatcattctttccctgtttctcttttcct 515 || |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 33272 agttcctgatgagatcaaagggagggtgcttcatcattccttccctgtttcccttttcct 33213 Query: 516 g 516 | Sbjct: 33212 g 33212 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 516 gccccgtaatgttcggttggagcacaagacacttaagcttctgaagtactggacctggca 575 |||||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 32543 gccccgcaatgttcgattggagcataaaacactgaagcttctgaagtactggacctggca 32484 Query: 576 at 577 || Sbjct: 32483 at 32482
>gb|BT013402.1| Lycopersicon esculentum clone 135714R, mRNA sequence Length = 1163 Score = 93.7 bits (47), Expect = 6e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 336 gggaagcaaaacgttttttacatgcttggagtctgttaaagaatgttatgaagcactggt 395 |||||||||| | ||||| || | |||||| ||||| |||||||||||||||||| | || Sbjct: 260 gggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgt 319 Query: 396 tattgctaagtttctggcattgatgtacagctacttaaatatatctatcagtaaaaacat 455 || |||||||| |||| |||||||||| ||||| |||||||| || || |||||||| Sbjct: 320 gatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacat 379 Query: 456 cgtacctgatgaaat 470 || ||||||||||| Sbjct: 380 agtccctgatgaaat 394
>ref|NM_118277.3| Arabidopsis thaliana unknown protein AT4G21570 mRNA, complete cds Length = 1286 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 373 aaagaatgttatgaagcactggttattgctaagtttctggcattgatgtacagctactta 432 |||||||| || ||||| || || ||||| || || ||||||||||||| || || || Sbjct: 411 aaagaatgctacgaagctcttgtcattgccaaattcttggcattgatgtatagttatcta 470 Query: 433 aatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagggtgcttcatcat 492 || |||||||| || |||||||| | ||||||| ||||||||| || | | |||| ||| Sbjct: 471 aacatatctatgagcaaaaacattttgcctgatggaatcaaaggaagagagattcaccat 530 Query: 493 tctttccc 500 |||||||| Sbjct: 531 tctttccc 538 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 240 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 299 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 300 aaggctatactcatcattgtgcttatggctcc 331
>gb|AY114568.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 373 aaagaatgttatgaagcactggttattgctaagtttctggcattgatgtacagctactta 432 |||||||| || ||||| || || ||||| || || ||||||||||||| || || || Sbjct: 247 aaagaatgctacgaagctcttgtcattgccaaattcttggcattgatgtatagttatcta 306 Query: 433 aatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagggtgcttcatcat 492 || |||||||| || |||||||| | ||||||| ||||||||| || | | |||| ||| Sbjct: 307 aacatatctatgagcaaaaacattttgcctgatggaatcaaaggaagagagattcaccat 366 Query: 493 tctttccc 500 |||||||| Sbjct: 367 tctttccc 374 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 76 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 135 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 136 aaggctatactcatcattgtgcttatggctcc 167
>gb|AY092966.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 1220 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 373 aaagaatgttatgaagcactggttattgctaagtttctggcattgatgtacagctactta 432 |||||||| || ||||| || || ||||| || || ||||||||||||| || || || Sbjct: 411 aaagaatgctacgaagctcttgtcattgccaaattcttggcattgatgtatagttatcta 470 Query: 433 aatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagggtgcttcatcat 492 || |||||||| || |||||||| | ||||||| ||||||||| || | | |||| ||| Sbjct: 471 aacatatctatgagcaaaaacattttgcctgatggaatcaaaggaagagagattcaccat 530 Query: 493 tctttccc 500 |||||||| Sbjct: 531 tctttccc 538 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 240 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 299 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 300 aaggctatactcatcattgtgcttatggctcc 331
>emb|BX828223.1|CNS0A3UK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 373 aaagaatgttatgaagcactggttattgctaagtttctggcattgatgtacagctactta 432 |||||||| || ||||| || || ||||| || || ||||||||||||| || || || Sbjct: 499 aaagaatgctacgaagctcttgtcattgccaaattcttggcattgatgtatagttatcta 558 Query: 433 aatatatctatcagtaaaaacatcgtacctgatgaaatcaaagggagggtgcttcatcat 492 || |||||||| || |||||||| | ||||||| ||||||||| || | | |||| ||| Sbjct: 559 aacatatctatgagcaaaaacattttgcctgatggaatcaaaggaagagagattcaccat 618 Query: 493 tctttccc 500 |||||||| Sbjct: 619 tctttccc 626 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 328 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 387 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 388 aaggctatactcatcattgtgcttatggctcc 419
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 410 tggcattgatgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaa 469 ||||||||||||| || || |||| |||||||| || |||||||| | ||||||| || Sbjct: 89769 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 89710 Query: 470 tcaaagggagggtgcttcatcattctttccc 500 ||||||| || | | |||| ||||||||||| Sbjct: 89709 tcaaaggaagagagattcaccattctttccc 89679 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Minus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 90060 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 90001 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 90000 aaggctatactcatcattgtgcttatggctcc 89969
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 410 tggcattgatgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaa 469 ||||||||||||| || || |||| |||||||| || |||||||| | ||||||| || Sbjct: 3712 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 3653 Query: 470 tcaaagggagggtgcttcatcattctttccc 500 ||||||| || | | |||| ||||||||||| Sbjct: 3652 tcaaaggaagagagattcaccattctttccc 3622 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Minus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 4003 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 3944 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 3943 aaggctatactcatcattgtgcttatggctcc 3912
>emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project) Length = 95266 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 410 tggcattgatgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaa 469 ||||||||||||| || || |||| |||||||| || |||||||| | ||||||| || Sbjct: 76761 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 76702 Query: 470 tcaaagggagggtgcttcatcattctttccc 500 ||||||| || | | |||| ||||||||||| Sbjct: 76701 tcaaaggaagagagattcaccattctttccc 76671 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Minus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 77052 catttcacgatacagcttgtatcgcagcatctcttccactggaagaaccctaaggaacaa 76993 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 76992 aaggctatactcatcattgtgcttatggctcc 76961
>emb|BX841534.1|CNS09YH3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1133 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 202 catttcacaatacagctggtatcacagcatcttttttattggaaaaatcccaaagagcag 261 |||||||| |||||||| ||||| |||||||| || | ||||| || || || || || Sbjct: 209 catttcacgatacagcttgtatcgcagcatctcttccactggaagaacccgaaggaacaa 268 Query: 262 aaggctatactcattatagtgctgatgcctcc 293 |||||||||||||| || ||||| ||| |||| Sbjct: 269 aaggctatactcatcattgtgcttatggctcc 300 Score = 46.1 bits (23), Expect = 0.13 Identities = 74/91 (81%) Strand = Plus / Plus Query: 410 tggcattgatgtacagctacttaaatatatctatcagtaaaaacatcgtacctgatgaaa 469 ||||||||||||| || || |||| |||||||| || |||| ||| | ||||||| || Sbjct: 418 tggcattgatgtatagttatctaaacatatctatgagcaaaagcattttgcctgatggaa 477 Query: 470 tcaaagggagggtgcttcatcattctttccc 500 ||||||| || | | |||| ||||||||||| Sbjct: 478 tcaaaggaagagagattcaccattctttccc 508
>emb|AL356157.14| Human DNA sequence from clone RP11-733D4 on chromosome 10 Contains part of a novel gene, complete sequence Length = 198917 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 tatgtcgatgttccctgggatg 132 |||||||||||||||||||||| Sbjct: 140473 tatgtcgatgttccctgggatg 140494
>emb|AL158175.7| Human DNA sequence from clone RP11-359G22 on chromosome 20 Contains the KRT18P3 gene for keratin 18 pseudogene 3 and a novel gene, complete sequence Length = 86025 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttc 513 |||||||||||||||||||||| Sbjct: 46326 ttctttccctgtttctcttttc 46347
>gb|AC021683.10| Homo sapiens chromosome 17, clone RP11-13K12, complete sequence Length = 162615 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 495 tttccctgtttctcttttcctg 516 |||||||||||||||||||||| Sbjct: 26721 tttccctgtttctcttttcctg 26742
>emb|AL590328.2|CNS07EG5 Human chromosome 14 DNA sequence BAC R-818K5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175210 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 tcttaccctccttggagcagct 180 |||||||||||||||||||||| Sbjct: 116814 tcttaccctccttggagcagct 116835
>emb|CR847999.10| Zebrafish DNA sequence from clone DKEY-216M6 in linkage group 11, complete sequence Length = 192191 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 tctttccctgtttctcttttcc 514 |||||||||||||||||||||| Sbjct: 140641 tctttccctgtttctcttttcc 140620
>emb|CR735106.9| Zebrafish DNA sequence from clone CH211-232N15 in linkage group 11, complete sequence Length = 167829 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 tctttccctgtttctcttttcc 514 |||||||||||||||||||||| Sbjct: 101796 tctttccctgtttctcttttcc 101775
>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200853 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 tcttaccctccttggagcagct 180 |||||||||||||||||||||| Sbjct: 12795 tcttaccctccttggagcagct 12816
>gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, complete sequence Length = 196596 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 attctttccctgtttctcttttcct 515 ||||||||||| ||||||||||||| Sbjct: 169427 attctttccctttttctcttttcct 169451
>gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete sequence Length = 182684 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 tcattctttccctgtttctct 509 ||||||||||||||||||||| Sbjct: 129273 tcattctttccctgtttctct 129293
>emb|AL662822.4| Human DNA sequence from clone XXbac-17K10 on chromosome 6 contains a major histocompatibility complex class 1-related polypeptide sequence B (MICB) pseudogene, a thymopoietin (TMPO) pseudogene, a succinate-CoA ligase, ADP forming, beta subunit (SUCLA2) pseudogene, a RAN, member RAS oncogene family pseudogene, the HLA-E gene for major histocompatibility complex, class I, E and six CpG islands, complete sequence Length = 162948 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 30749 ttctttctctgtttctcttttcctg 30773
>emb|AL662873.3| Human DNA sequence from clone XXbac-34K20 on chromosome 6 contains a major histocompatibility complex class 1 polypeptide-related sequence B (MICB) pseudogene, a thymopoietin (TMPO) pseudogene, a succinate-CoA ligase, ADP-forming, beta subunit (SUCLA2) pseudogene, a RAN, member RAS oncogene family pseudogene, the HLA-E gene for major histocompatibility complex, class I, E, and six CpG islands, complete sequence Length = 107795 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 18461 ttctttctctgtttctcttttcctg 18485
>gb|AC162611.2| Mus musculus chromosome 3, clone RP24-86E1, complete sequence Length = 229643 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 491 attctttccctgtttctcttttcct 515 ||||||||||| ||||||||||||| Sbjct: 202844 attctttccctttttctcttttcct 202820
>emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in linkage group 11 Contains three novel genes, the opn1lw1 gene for opsin 1 (cone pigments), long-wave-sensitive, 1, a gene for novel protein similar to human and rodent member RAS oncogene family RAB7 (RAB7), a gene for novel protein remotely similar to human host cell factor 1 (VP16-accessory protein) (HCFC1), the opn1sw2 gene for opsin 1 (cone pigments), short-wave-sensitive 1, a gene for novel protein similar to human and mouse CpG binding protein (CGBP), a gene for novel protein similar to vertebrate microphthalmia-associated transcription factor (MITF) and zebrafish transcription factor binding to IGHM enhancer 3a (tfe3a), a gene for novel protein similar to human and rodent catechol-O-methyltransferase (COMT), the flj10613l gene for hypothetical protein FLJ10613-like (H. sapiens), a gene for novel protein similar to human and mouse methyl-CpG binding domain protein 1 (MBD1), a gene for novel protein similar to zebrafish red-sensitive opsin (rdops), a gene for novel protein similar to mouse and human host cell factor C1 (VP16-accessory protein) (HCFC1), a gene for novel protein similar to human and rodent metabotropic glutamate receptors (GRM) and two CpG islands, complete sequence Length = 235174 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 ggaaaaatcccaaagagcaga 262 ||||||||||||||||||||| Sbjct: 137653 ggaaaaatcccaaagagcaga 137633
>emb|AL645745.7| Mouse DNA sequence from clone RP23-213G18 on chromosome 13 contains an H+ transporting mitochondrial F0 complex ATP synthase f2 (Atp5j2) pseudogene, the Irf4 gene for interferon regulatory factor 4 and the 3' end of the gene for 2410030I24RIK protein (ortholog of human SEC5), complete sequence Length = 137942 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 acttaagcttctgaagtactg 566 ||||||||||||||||||||| Sbjct: 111929 acttaagcttctgaagtactg 111909
>emb|CR812479.6| Human DNA sequence from clone DADB-148B19 on chromosome 6, complete sequence Length = 65104 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 39205 ttctttctctgtttctcttttcctg 39229
>emb|CR759890.6| Human DNA sequence from clone DAAP-56K16 on chromosome 6, complete sequence Length = 89424 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 55151 ttctttctctgtttctcttttcctg 55175
>gb|AF283320.1|AF283320S1 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5) gene, exons 1 through 9 Length = 122056 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tctgcccctgagctcctccgc 83 ||||||||||||||||||||| Sbjct: 43984 tctgcccctgagctcctccgc 44004
>emb|BX927214.4| Human DNA sequence from clone DAMA-368F21 on chromosome 6, complete sequence Length = 113690 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 96197 ttctttctctgtttctcttttcctg 96221
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 1529697 ttctttctctgtttctcttttcctg 1529673
>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence Length = 162643 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 attctttccctgtttctcttttcct 515 ||||||||||| ||||||||||||| Sbjct: 86021 attctttccctttttctcttttcct 86045
>emb|AL844203.3| Human DNA sequence from clone DAQB-39G10 on chromosome 6 Contains the MICC pseudogene for MHC class I polypeptide-related sequence C and no CpG islands, complete sequence Length = 49925 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 21565 ttctttctctgtttctcttttcctg 21589
>gb|AC004207.1|AC004207 Homo sapiens clone UWGC:y55c182 from 6p21, complete sequence Length = 42824 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 4833 ttctttctctgtttctcttttcctg 4809
>gb|AC004208.1|AC004208 Homo sapiens clone UWGC:y55c205 from 6p21, complete sequence Length = 38616 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 34140 ttctttctctgtttctcttttcctg 34116
>emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on chromosome X, complete sequence Length = 192292 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 cacagcatcttttttattgga 244 ||||||||||||||||||||| Sbjct: 156452 cacagcatcttttttattgga 156432
>dbj|AB014083.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, Cosmid clone:TY8C9, complete sequence Length = 22715 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 ttctttccctgtttctcttttcctg 516 ||||||| ||||||||||||||||| Sbjct: 7534 ttctttctctgtttctcttttcctg 7510
>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete sequence Length = 198720 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tctgcccctgagctcctccgc 83 ||||||||||||||||||||| Sbjct: 63786 tctgcccctgagctcctccgc 63806
>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete sequence Length = 204439 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tctgcccctgagctcctccgc 83 ||||||||||||||||||||| Sbjct: 10599 tctgcccctgagctcctccgc 10619
>gb|BC048223.1| Xenopus laevis hypothetical protein MGC52586, mRNA (cDNA clone MGC:52586 IMAGE:5572854), complete cds Length = 3157 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 tatcacagcatcttttttattggaaaaa 248 ||||| ||||| |||||||||||||||| Sbjct: 2158 tatcaaagcattttttttattggaaaaa 2185
>gb|AC151275.3| Mus musculus BAC clone RP24-201F8 from chromosome 17, complete sequence Length = 190772 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgttgtctatgcatttcaca 210 |||||||||||||||||||| Sbjct: 179095 tgttgtctatgcatttcaca 179076
>emb|BX248309.8| Human DNA sequence from clone DASS-241N2 on chromosome 6, complete sequence Length = 29588 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 28239 attggaaaaatcccaaagag 28258
>emb|AL844527.6| Human DNA sequence from clone DAQB-314F24 on chromosome 6 Contains the 5' end of the COL11A2 gene for collagen type XI alpha 2, the RXRB gene for retinoid X receptor, beta, the SLC39A7 gene for solute carrier family 39 (zinc transporter), member 7, the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, the ZNF314P pseudogene for zinc finger protein 314, the HTATSF1P pseudogene for HIV TAT specific factor 1, the HCG25 gene for HLA complex group 25, the VPS52 gene for vacuolar protein sorting 52 (yeast), the RPS18 gene for ribosomal protein S18, the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4, the 3'end of the C6orf11 gene for chromosome 6 open reading frame 11, and 7 CpG islands, complete sequence Length = 109523 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 18971 attggaaaaatcccaaagag 18990
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 172136 attggaaaaatcccaaagag 172155
>emb|AL645940.4| Human DNA sequence from clone XXbac-157A10 on chromosome 6 contains the 3' end of the gene for a novel protein similar to major histocompatibility complex, class II, DP beta 2 pseudogene, a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the FABGL gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, a zinger finger protein pseudogene, a HIV TAT specific factor 1 (HTATSF1) pseudogene, a novel transcript, the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast), the 5' end of the RPS18 gene for ribosomal protein S18 and six CpG islands, complete sequence Length = 158033 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 75552 attggaaaaatcccaaagag 75571
>emb|AL590097.16| Human DNA sequence from clone RP11-117C7 on chromosome X Contains part of the HTR2C gene for 5-hydroxytryptamine (serotonin) receptor 2C, complete sequence Length = 104773 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 cctgtttctcttttcctgcc 518 |||||||||||||||||||| Sbjct: 2346 cctgtttctcttttcctgcc 2327
>emb|AL355812.23| Human DNA sequence from clone RP11-810O3 on chromosome Xq22.3-24 Contains the 3' end of the HTR2C gene for 5-hydroxytryptamine (serotonin) receptor 2C, complete sequence Length = 147288 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 cctgtttctcttttcctgcc 518 |||||||||||||||||||| Sbjct: 48170 cctgtttctcttttcctgcc 48189
>emb|AL031228.1|HS1033B10 Human DNA sequence from clone RP5-1033B10 on chromosome 6p21.2-21.31 Contains the 3' end of the C6ORF11 gene for chromosome 6 open reading frame 11 (BING4), the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase polypeptide 4 (GalT4,Gal-T2,beta3GALT4,beta3Gal-T4), the RPS18 gene for 40S ribosomal protein S18 (KE3,HKE3,KE-3), the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast)(ARE1,SAC2,ARE-1,RP5-1033B10), a pseudogene similar to part of HTATSF1 (HIV TAT specific factor 1), the RING1 gene for ring finger protein 1 (RNF1), the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 (KE6,FABG,HKE6,FABGL,RING2,H2-KE6,D6S2245E), the HKE4 gene for HLA class II region protein KE4 (KE4,RING5,H2-KE4,D6S115E,D6S2244E), the RXRB gene for retinoid X receptor beta (NR2B2,RCoR-1,H-2RIIBP), the COL11A2 gene for collagen type XI alpha 2 (HKE5,PARP,STL3,DFNA13), an HLA class II histocompatability antigen D or S beta pseudogene,the gene for a novel protein similar to major histocompatibility complex class II DP beta 1 precursor, three novel genes and seven CpG islands, complete sequence Length = 175737 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 95713 attggaaaaatcccaaagag 95694
>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence Length = 246033 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 491 attctttccctgtttctcttttcc 514 |||||||||||||| ||||||||| Sbjct: 11497 attctttccctgttcctcttttcc 11520
>emb|CR936877.4| Human DNA sequence from clone DAMC-269O2 on chromosome 6, complete sequence Length = 50562 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 37803 attggaaaaatcccaaagag 37822
>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161577 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ctgtttctcttttcctgccc 519 |||||||||||||||||||| Sbjct: 157995 ctgtttctcttttcctgccc 157976
>emb|CR354565.6| Human DNA sequence from clone DAMA-248N13 on chromosome 6, complete sequence Length = 61882 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 48503 attggaaaaatcccaaagag 48522
>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13, complete sequence Length = 166397 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 tctatgcatttcacaataca 215 |||||||||||||||||||| Sbjct: 138926 tctatgcatttcacaataca 138945
>emb|CR759733.4| Human DNA sequence from clone DADB-100D22 on chromosome 6, complete sequence Length = 104205 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 62805 attggaaaaatcccaaagag 62824
>ref|NM_067180.2| Caenorhabditis elegans Y75B8A.8 (Y75B8A.8) mRNA, complete cds Length = 2278 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 agcttctgaagtactggacc 570 |||||||||||||||||||| Sbjct: 1895 agcttctgaagtactggacc 1876
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 141499 attggaaaaatcccaaagag 141518
>gb|AC148707.1| Macaca mulatta Major Histocompatibility Complex BAC MMU380B12, complete sequence Length = 171055 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 7161 attggaaaaatcccaaagag 7180
>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete sequence Length = 174172 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 99725 attggaaaaatcccaaagag 99744
>gb|AC025040.7|AC025040 Homo sapiens chromosome 15 clone CTD-2647E9 map 15q21.1, complete sequence Length = 173394 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 tctttccctgtttctctttt 512 |||||||||||||||||||| Sbjct: 18810 tctttccctgtttctctttt 18829
>gb|AC122688.5| Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178315 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 ttctttccctgtttctcttt 511 |||||||||||||||||||| Sbjct: 22212 ttctttccctgtttctcttt 22193
>gb|AC018927.6|AC018927 Homo sapiens chromosome 15 clone RP11-353B9 map 15q21, complete sequence Length = 184864 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 tctttccctgtttctctttt 512 |||||||||||||||||||| Sbjct: 182076 tctttccctgtttctctttt 182095
>gb|U32169.1|HSU32169 Human pro-a2 chain of collagen type XI (COL11A2) gene, complete cds Length = 28789 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 attggaaaaatcccaaagag 258 |||||||||||||||||||| Sbjct: 1721 attggaaaaatcccaaagag 1702
>gb|AC106950.7| Rattus norvegicus BAC CH230-23G8 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 254341 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tctgttaaagaatgttatga 386 |||||||||||||||||||| Sbjct: 142996 tctgttaaagaatgttatga 142977
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ttattggaaaaatcccaaagagca 260 |||||||||||||||||| ||||| Sbjct: 805153 ttattggaaaaatcccaatgagca 805176
>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence Length = 298406 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 agcttctgaagtactggacc 570 |||||||||||||||||||| Sbjct: 100290 agcttctgaagtactggacc 100271
>gb|L20299.1|XELETCREC Xenopus laevis endothelin-3 receptor mRNA, complete cds Length = 2240 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 tatcacagcatcttttttattggaaaaa 248 ||||| ||||| |||||||||||||||| Sbjct: 2207 tatcaaagcattttttttattggaaaaa 2234 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,899,332 Number of Sequences: 3902068 Number of extensions: 5899332 Number of successful extensions: 116532 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116349 Number of HSP's gapped (non-prelim): 180 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)