ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags23o22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STE2_SACKL (P12384) Pheromone alpha factor receptor 30 4.8
2IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 ... 30 8.1

>STE2_SACKL (P12384) Pheromone alpha factor receptor|
          Length = 426

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 210 HHHYLEQLYSVKSSFNRNYMYRKNSSNKIYPNPGCPGH 97
           H + L  LY V  + N       N  +K+ PNP C GH
Sbjct: 342 HTNNLYDLYPVSRTSNSRCNGYPNDGSKLAPNPNCVGH 379



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>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1|
            (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1402

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 198  LEQLYSVKSSFNRNYMYRKNSSNKIYPNPGCPGHPRAR*LRTERRSERGRWSNRGAAPRX 19
            L+Q    +S+ NR  + R + S +     G  G PR R  R+ER  +RG   +R   P  
Sbjct: 929  LQQAVPTESTDNRRVVQRSSLSRE---RGGKAGEPRRRLERSERGGDRGDRLDRARTPAT 985

Query: 18   GR 13
             R
Sbjct: 986  KR 987


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,298,633
Number of Sequences: 219361
Number of extensions: 1723565
Number of successful extensions: 3954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3953
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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