ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23o16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092546.4| Homo sapiens BAC clone RP11-801O14 from 4, complete sequence Length = 118981 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 651 tgcaaaactaattaaccacatttactttt 679 |||||||||||||||||||| |||||||| Sbjct: 84118 tgcaaaactaattaaccacaattactttt 84146
>emb|AL935206.8| Zebrafish DNA sequence from clone CH211-254A7, complete sequence Length = 169723 Score = 48.1 bits (24), Expect = 0.040 Identities = 24/24 (100%) Strand = Plus / Minus Query: 671 tttacttttttatttcacttattt 694 |||||||||||||||||||||||| Sbjct: 32747 tttacttttttatttcacttattt 32724
>gb|AC131745.4| Mus musculus BAC clone RP23-55L3 from chromosome 14, complete sequence Length = 240647 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 tagtcatggtggacaccgggaa 90 |||||||||||||||||||||| Sbjct: 132467 tagtcatggtggacaccgggaa 132488
>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene, complete cds Length = 63393 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 508 ttcatccatgtagtagtatata 529 |||||||||||||||||||||| Sbjct: 53536 ttcatccatgtagtagtatata 53557
>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence Length = 215566 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 atatggatatatattctttttc 352 |||||||||||||||||||||| Sbjct: 91825 atatggatatatattctttttc 91804
>emb|AL133262.8| Human DNA sequence from clone RP1-319D22 on chromosome 6 Contains the 3' end of a novel gene (possible ortholog of rodent CDC5-like protein), complete sequence Length = 86372 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 508 ttcatccatgtagtagtatata 529 |||||||||||||||||||||| Sbjct: 16664 ttcatccatgtagtagtatata 16685
>ref|XM_396572.2| PREDICTED: Apis mellifera similar to CG4742-PA (LOC413121), mRNA Length = 953 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 488 tccattgaaaatgtggtatatt 509 |||||||||||||||||||||| Sbjct: 360 tccattgaaaatgtggtatatt 381
>ref|XM_623056.1| PREDICTED: Apis mellifera similar to CG4742-PA (LOC413121), mRNA Length = 1161 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 488 tccattgaaaatgtggtatatt 509 |||||||||||||||||||||| Sbjct: 568 tccattgaaaatgtggtatatt 589
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 676 ttttttatttcacttatttcta 697 |||||||||||||||||||||| Sbjct: 4683618 ttttttatttcacttatttcta 4683639 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 658 ctaattaaccacatttactttttt 681 ||||||||||| |||||||||||| Sbjct: 35204975 ctaattaaccatatttactttttt 35204952
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 676 ttttttatttcacttatttcta 697 |||||||||||||||||||||| Sbjct: 55690 ttttttatttcacttatttcta 55711
>gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, complete sequence Length = 207556 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 206967 aaaatgtggtatattcatcca 206987
>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence Length = 175917 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 168799 aaaatgtggtatattcatcca 168779
>ref|XM_766012.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_186_54829_49136) partial mRNA Length = 5694 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 atatgataatttgcatgtgtg 141 ||||||||||||||||||||| Sbjct: 3281 atatgataatttgcatgtgtg 3261
>emb|CR713709.2|CNS0GDND Tetraodon nigroviridis full-length cDNA Length = 1145 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 cacatttacttttttatttca 687 ||||||||||||||||||||| Sbjct: 1137 cacatttacttttttatttca 1117
>emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chromosome 9 Contains the 5' end of a novel gene (FLJ25416), the 3' end of a novel gene and a novel gene, complete sequence Length = 116806 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 atatttgtatttccataatta 422 ||||||||||||||||||||| Sbjct: 46985 atatttgtatttccataatta 46965
>emb|AL139376.17| Human DNA sequence from clone RP11-23E3 on chromosome 13 Contains a novel gene, the CLDN10 gene for claudin 10 (OSP-L, CPETRL3), the gene for novel zinc-finger protein (DZIP1, KIAA0996) and 3 CpG islands, complete sequence Length = 152794 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 aacaaactaatagaaaaaata 121 ||||||||||||||||||||| Sbjct: 50915 aacaaactaatagaaaaaata 50895
>gb|AC024218.17| Homo sapiens 3 BAC RP11-668N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141860 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 677 tttttatttcacttatttcta 697 ||||||||||||||||||||| Sbjct: 83962 tttttatttcacttatttcta 83982
>gb|AC132007.2| Homo sapiens 3 BAC CTD-2230D16 (Cal Tech Human BAC Library) complete sequence Length = 69700 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 2885 aaaatgtggtatattcatcca 2905
>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence Length = 150889 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 tatttccataattaaaatata 429 ||||||||||||||||||||| Sbjct: 97667 tatttccataattaaaatata 97647
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 640 tatatactgcttgcaaaactaatta 664 |||||||||||| |||||||||||| Sbjct: 29246 tatatactgcttacaaaactaatta 29270
>gb|AF485947.1| Nirridessus challaensis 16S ribosomal RNA gene, partial sequence; tRNA-Leu gene, complete sequence; and NADH dehydrogenase subunit 1 gene, partial cds; mitochondrial genes for mitochondrial products Length = 793 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 aacaaactaatagaaaaaata 121 ||||||||||||||||||||| Sbjct: 726 aacaaactaatagaaaaaata 706
>gb|AC105316.5| Homo sapiens BAC clone RP11-524B5 from 4, complete sequence Length = 148571 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 aaactaatagaaaaaatatat 124 ||||||||||||||||||||| Sbjct: 119115 aaactaatagaaaaaatatat 119135
>gb|AC093106.3| Homo sapiens chromosome 7 clone CTD-2502H6, complete sequence Length = 177806 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 69712 aaaatgtggtatattcatcca 69692
>gb|AC007540.3| Homo sapiens 12q24.1 BAC RPCI11-128P10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174652 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 599 atggtgcatatatgtactacctttt 623 |||||||||||||||||||| |||| Sbjct: 165168 atggtgcatatatgtactacatttt 165144
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 640 tatatactgcttgcaaaactaatta 664 |||||||||||| |||||||||||| Sbjct: 18477447 tatatactgcttacaaaactaatta 18477423
>gb|AC008403.8| Homo sapiens chromosome 19 clone CTC-273B12, complete sequence Length = 190076 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 41599 aaaatgtggtatattcatcca 41579
>gb|AC079235.7| Homo sapiens BAC clone RP11-495O23 from 2, complete sequence Length = 212237 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 84862 aaaatgtggtatattcatcca 84842
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence Length = 162694 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 156723 aaaatgtggtatattcatcca 156703
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 gttcatccgtaatatcagtat 486 ||||||||||||||||||||| Sbjct: 1008708 gttcatccgtaatatcagtat 1008688
>emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 in linkage group 19, complete sequence Length = 188746 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 670 atttacttttttatttcacttatttctag 698 |||||||||||| |||||||| ||||||| Sbjct: 160835 atttacttttttttttcacttgtttctag 160863
>dbj|AP003503.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-86D13, complete sequence Length = 175454 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 aaaatgtggtatattcatcca 515 ||||||||||||||||||||| Sbjct: 34219 aaaatgtggtatattcatcca 34199
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 actaatagaaaaaatatatgataat 130 ||||||||||||||||||| ||||| Sbjct: 263781 actaatagaaaaaatatattataat 263757
>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence Length = 166809 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 tatttccataattaaaatata 429 ||||||||||||||||||||| Sbjct: 138819 tatttccataattaaaatata 138799
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 640 tatatactgcttgcaaaactaatta 664 |||||||||||| |||||||||||| Sbjct: 18487500 tatatactgcttacaaaactaatta 18487476
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 ttcctttcaggctgatggccc 582 ||||||||||||||||||||| Sbjct: 18356 ttcctttcaggctgatggccc 18376
>gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 ttcatccatgtagtagtatat 528 ||||||||||||||||||||| Sbjct: 64913 ttcatccatgtagtagtatat 64933
>emb|AL772383.4| Mouse DNA sequence from clone RP23-22H5 on chromosome 4, complete sequence Length = 149147 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 caacaaactaatagaaaaaat 120 ||||||||||||||||||||| Sbjct: 128952 caacaaactaatagaaaaaat 128972
>ref|NM_113075.2| Arabidopsis thaliana UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups AT3G21800 mRNA, complete cds Length = 1580 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atatgataatttgcatgtgt 140 |||||||||||||||||||| Sbjct: 1516 atatgataatttgcatgtgt 1535
>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence Length = 198267 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 agtatctgttactgtcagctttgg 191 ||||||||||| |||||||||||| Sbjct: 156099 agtatctgttaatgtcagctttgg 156122
>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence Length = 253151 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaaaaatatatgataatttg 133 |||||||||||||||||||| Sbjct: 79150 aaaaaatatatgataatttg 79131
>gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complete sequence Length = 161579 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tatccattgaaaatgtggta 505 |||||||||||||||||||| Sbjct: 26748 tatccattgaaaatgtggta 26767
>gb|BC072027.1| Xenopus laevis hypothetical protein LOC432146, mRNA (cDNA clone IMAGE:3400871), partial cds Length = 4997 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 670 atttacttttttatttcact 689 |||||||||||||||||||| Sbjct: 2831 atttacttttttatttcact 2850
>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence Length = 200529 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 tcaggctgatggcccaaggc 587 |||||||||||||||||||| Sbjct: 112962 tcaggctgatggcccaaggc 112943
>gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, complete sequence Length = 143216 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 tcaggctgatggcccaaggc 587 |||||||||||||||||||| Sbjct: 93001 tcaggctgatggcccaaggc 93020
>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence Length = 245390 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaacacttaccaaacttctt 34 |||||||||||||||||||| Sbjct: 128691 aaacacttaccaaacttctt 128710
>gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, complete sequence Length = 202182 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 ccataattaaaatatagtgt 433 |||||||||||||||||||| Sbjct: 106411 ccataattaaaatatagtgt 106430
>gb|AF318617.1| Rattus norvegicus sterol 8-isomerase gene, complete cds Length = 9565 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aattaaaatatagtgtatgt 437 |||||||||||||||||||| Sbjct: 1109 aattaaaatatagtgtatgt 1090
>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete sequence Length = 219139 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 ccataattaaaatatagtgt 433 |||||||||||||||||||| Sbjct: 18311 ccataattaaaatatagtgt 18330
>ref|XM_386212.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06036.1) partial mRNA Length = 1593 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 gtagtagtatatacagtagt 536 |||||||||||||||||||| Sbjct: 1109 gtagtagtatatacagtagt 1090
>gb|AC108117.2| Homo sapiens chromosome 5 clone RP11-348K15, complete sequence Length = 159501 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tttttccagtgaaattattt 366 |||||||||||||||||||| Sbjct: 44295 tttttccagtgaaattattt 44276
>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence Length = 180594 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 gtatttccataattaaaata 427 |||||||||||||||||||| Sbjct: 33930 gtatttccataattaaaata 33949
>ref|XM_950420.1| Theileria annulata strain Ankara hypothetical protein (TA18455) partial mRNA Length = 897 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 661 attaaccacatttacttttttatt 684 |||||||| ||||||||||||||| Sbjct: 342 attaaccaaatttacttttttatt 319
>gb|AC073125.5| Homo sapiens BAC clone RP11-636L15 from 7, complete sequence Length = 188804 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 aactaatagaaaaaatatat 124 |||||||||||||||||||| Sbjct: 115994 aactaatagaaaaaatatat 116013
>emb|BX546490.2| Human DNA sequence from clone RP11-336F23 on chromosome 1, complete sequence Length = 110467 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ttctttttccagtgaaatta 363 |||||||||||||||||||| Sbjct: 60904 ttctttttccagtgaaatta 60885
>emb|AL954711.3| Human DNA sequence from clone RP11-666A1 on chromosome 1 Contains two novel pseudogenes, two novel genes, a profilin 1 (PFN1) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and three CpG islands, complete sequence Length = 172789 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 127859 taatagaaaaaatatatgctaatt 127836
>emb|AL592492.10| Human DNA sequence from clone RP11-763B22 on chromosome 1 Contains a profilin (PFN1) pseudogene, three novel genes, two novel pseudogenes (FLJ39739), a cyclophilin-LC (COAS2) pseudogene, a pseudogene similar to part of kinase suppressor of ras (KSR), the 5' end of a myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3) pseudogene and two CpG islands, complete sequence Length = 158089 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 67080 taatagaaaaaatatatgctaatt 67057
>emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on chromosome 13 Contains a CpG island, complete sequence Length = 166237 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 671 tttacttttttatttcactt 690 |||||||||||||||||||| Sbjct: 55286 tttacttttttatttcactt 55267
>gb|AC114878.2| Homo sapiens chromosome 1 clone RP11-272L13, complete sequence Length = 194999 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 atattaaatggtgcatatat 611 |||||||||||||||||||| Sbjct: 177240 atattaaatggtgcatatat 177221
>gb|AC112026.4| Rattus norvegicus 19 BAC CH230-105L11 (Children's Hospital Oakland Research Institute) complete sequence Length = 237539 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 668 acatttacttttttatttca 687 |||||||||||||||||||| Sbjct: 173986 acatttacttttttatttca 174005
>gb|AC022795.9| Homo sapiens chromosome 18, clone RP11-254G11, complete sequence Length = 158003 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 678 ttttatttcacttatttcta 697 |||||||||||||||||||| Sbjct: 75804 ttttatttcacttatttcta 75823
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence Length = 173513 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gaaaaaatatatgataattt 132 |||||||||||||||||||| Sbjct: 94367 gaaaaaatatatgataattt 94386
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 atatttgtatttccataatt 421 |||||||||||||||||||| Sbjct: 9997 atatttgtatttccataatt 9978
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 atatttgtatttccataatt 421 |||||||||||||||||||| Sbjct: 5466 atatttgtatttccataatt 5447
>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project) Length = 85356 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 atatttgtatttccataatt 421 |||||||||||||||||||| Sbjct: 71968 atatttgtatttccataatt 71949
>emb|AL928702.7| Mouse DNA sequence from clone RP23-292J9 on chromosome 11 Contains a reduced expression 3 (Rex3) pseudogene, complete sequence Length = 62980 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctttttccagtgaaattatttatt 369 |||||||||||||| ||||||||| Sbjct: 8753 ctttttccagtgaatttatttatt 8730
>emb|CR769766.10| Zebrafish DNA sequence from clone DKEY-207J12 in linkage group 2, complete sequence Length = 201113 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 tatttccataattaaaatatagtg 432 ||||||||||||| |||||||||| Sbjct: 47327 tatttccataatttaaatatagtg 47350
>gb|AC122700.2| Homo sapiens chromosome 5 clone CTD-3136I2, complete sequence Length = 118238 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tttttccagtgaaattattt 366 |||||||||||||||||||| Sbjct: 16486 tttttccagtgaaattattt 16505
>gb|BC098967.1| Xenopus laevis hypothetical protein LOC432146, mRNA (cDNA clone MGC:114717 IMAGE:6637365), complete cds Length = 5077 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 670 atttacttttttatttcact 689 |||||||||||||||||||| Sbjct: 2908 atttacttttttatttcact 2927
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ggatattgctatgcagtatg 398 |||||||||||||||||||| Sbjct: 70880 ggatattgctatgcagtatg 70899
>emb|BX283067.15| Human DNA sequence from clone RP11-289I10 on chromosome 1, complete sequence Length = 57950 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 26661 taatagaaaaaatatatgctaatt 26638
>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence Length = 153310 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tattctttttccagtgaaat 361 |||||||||||||||||||| Sbjct: 96961 tattctttttccagtgaaat 96942
>emb|BX469915.7| Zebrafish DNA sequence from clone CH211-63B16 in linkage group 17, complete sequence Length = 172252 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 atgataatttgcatgtgtgacttc 146 |||||||| ||||||||||||||| Sbjct: 97905 atgataatctgcatgtgtgacttc 97882
>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 186812 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ggatattgctatgcagtatg 398 |||||||||||||||||||| Sbjct: 90962 ggatattgctatgcagtatg 90943
>gb|AC119045.3| Homo sapiens 12 BAC RP11-111J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 16701 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 100 caacaaactaatagaaaaaatatatgat 127 ||||||||||| |||||||| ||||||| Sbjct: 12878 caacaaactaaaagaaaaaacatatgat 12905
>gb|AC063927.15| Homo sapiens 3 BAC RP11-52L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129769 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 675 cttttttatttcacttattt 694 |||||||||||||||||||| Sbjct: 119619 cttttttatttcacttattt 119600
>gb|AC006219.10| Arabidopsis thaliana chromosome 2 clone T14C8 map g4532, complete sequence Length = 82532 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaacacttaccaaacttctt 34 |||||||||||||||||||| Sbjct: 60044 aaacacttaccaaacttctt 60063
>gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complete sequence Length = 162214 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tttacttttttatttcactt 690 |||||||||||||||||||| Sbjct: 148479 tttacttttttatttcactt 148498
>gb|AC093803.3| Homo sapiens BAC clone RP11-319N12 from 4, complete sequence Length = 191903 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 agcaacaaactaatagaaaa 117 |||||||||||||||||||| Sbjct: 170869 agcaacaaactaatagaaaa 170850
>gb|AC099307.1| Drosophila melanogaster, chromosome 2R, region 57C-57D, BAC clone BACR13H23, complete sequence Length = 179139 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 tttgtatttccataattaaaatat 428 ||||| |||||||||||||||||| Sbjct: 126095 tttgtgtttccataattaaaatat 126072
>gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, complete sequence Length = 167100 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tagaaaaaatatatgataat 130 |||||||||||||||||||| Sbjct: 48580 tagaaaaaatatatgataat 48561
>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete sequence Length = 175409 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 670 atttacttttttatttcacttatt 693 ||||| |||||||||||||||||| Sbjct: 114280 atttaattttttatttcacttatt 114303
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ggatattgctatgcagtatg 398 |||||||||||||||||||| Sbjct: 12477 ggatattgctatgcagtatg 12496
>gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205283 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aactaatagaaaaaatatat 124 |||||||||||||||||||| Sbjct: 188870 aactaatagaaaaaatatat 188851
>gb|AC068138.6| Homo sapiens BAC clone RP11-813K12 from 2, complete sequence Length = 168698 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 aatatatgctactatactca 265 |||||||||||||||||||| Sbjct: 14315 aatatatgctactatactca 14296
>gb|AC023064.5|AC023064 Arabidopsis thaliana chromosome 1 BAC F12A4 genomic sequence, complete sequence Length = 63489 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ctaatagaaaaaatatatga 126 |||||||||||||||||||| Sbjct: 4769 ctaatagaaaaaatatatga 4788
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 663 taaccacatttactttttta 682 |||||||||||||||||||| Sbjct: 105762 taaccacatttactttttta 105743
>gb|AC128674.3| Homo sapiens BAC clone RP11-1390M18 from UL, complete sequence Length = 202721 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 139565 taatagaaaaaatatatgctaatt 139542
>gb|AC063932.14| Homo sapiens 3 BAC RP11-298A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186897 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 atacatgaacatgaatgtga 288 |||||||||||||||||||| Sbjct: 147027 atacatgaacatgaatgtga 147046
>gb|AC104229.18| Homo sapiens chromosome 15, clone RP11-23A22, complete sequence Length = 168235 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 agcaacaaactaatagaaaa 117 |||||||||||||||||||| Sbjct: 22537 agcaacaaactaatagaaaa 22518
>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence Length = 158096 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ctaatagaaaaaatatatga 126 |||||||||||||||||||| Sbjct: 155454 ctaatagaaaaaatatatga 155473
>gb|AC127384.4| Homo sapiens BAC clone RP11-1390A11 from UL, complete sequence Length = 202837 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 104676 taatagaaaaaatatatgctaatt 104699
>gb|AC154005.4| Mus musculus 6 BAC RP24-82B18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 181556 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 ttaaatggtgcatatatgta 614 |||||||||||||||||||| Sbjct: 166714 ttaaatggtgcatatatgta 166733
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 658 ctaattaaccacatttactttttt 681 ||||||||||| |||||||||||| Sbjct: 17025 ctaattaaccatatttactttttt 17002
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 658 ctaattaaccacatttactttttt 681 ||||||||||| |||||||||||| Sbjct: 100331 ctaattaaccatatttactttttt 100308
>gb|AC155913.5| Mus musculus 6 BAC RP24-402E22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162332 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 ttaaatggtgcatatatgta 614 |||||||||||||||||||| Sbjct: 145346 ttaaatggtgcatatatgta 145327
>dbj|AB025634.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSD21 Length = 59793 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 atatgataatttgcatgtgt 140 |||||||||||||||||||| Sbjct: 37052 atatgataatttgcatgtgt 37033
>dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15 Length = 79995 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tatggatatatattcttttt 351 |||||||||||||||||||| Sbjct: 27981 tatggatatatattcttttt 28000
>gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complete sequence Length = 162520 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ccataattaaaatatagtgt 433 |||||||||||||||||||| Sbjct: 152533 ccataattaaaatatagtgt 152514
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 catccatacatgaacatgaa 283 |||||||||||||||||||| Sbjct: 851083 catccatacatgaacatgaa 851064
>emb|BX548009.4| Zebrafish DNA sequence from clone CH211-237K17 in linkage group 3, complete sequence Length = 128639 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaaaaatatatgataatttg 133 |||||||||||||||||||| Sbjct: 9867 aaaaaatatatgataatttg 9848
>gb|AC006359.3|AC006359 Homo sapiens clone DJ1135M02, complete sequence Length = 118730 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 taatagaaaaaatatatgataatt 131 |||||||||||||||||| ||||| Sbjct: 85922 taatagaaaaaatatatgctaatt 85945
>gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 of 118 of the complete sequence Length = 145958 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tatccattgaaaatgtggta 505 |||||||||||||||||||| Sbjct: 65217 tatccattgaaaatgtggta 65236
>gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137557 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 676 ttttttatttcacttatttc 695 |||||||||||||||||||| Sbjct: 92264 ttttttatttcacttatttc 92245
>emb|AJ312318.1|RNO312318 Rattus norvegicus partial ste2 gene for estrogen sulfotransferase, alternative mRNA transcripts, exons 1a and 1b Length = 1399 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 atggatatatattctttttc 352 |||||||||||||||||||| Sbjct: 538 atggatatatattctttttc 557
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 tttgtatttccataattaaaatat 428 ||||| |||||||||||||||||| Sbjct: 115930 tttgtgtttccataattaaaatat 115907
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 663 taaccacatttactttttta 682 |||||||||||||||||||| Sbjct: 132651 taaccacatttactttttta 132632
>emb|AJ131835.1|RNO131835 Rattus norvegicus partial ste1 gene for estrogen sulfotransferase, exons 1-2 and joined CDS Length = 5089 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 atggatatatattctttttc 352 |||||||||||||||||||| Sbjct: 2501 atggatatatattctttttc 2520
>dbj|AP001077.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-767P20, complete sequence Length = 199652 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 gaaaatgtggtatattcatc 513 |||||||||||||||||||| Sbjct: 63205 gaaaatgtggtatattcatc 63224
>dbj|AP005482.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-973H7, complete sequence Length = 170560 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 gaaaatgtggtatattcatc 513 |||||||||||||||||||| Sbjct: 112684 gaaaatgtggtatattcatc 112703
>gb|AC004300.1|AC004300 Drosophila melanogaster DNA sequence (P1 DS08209 (D186)), complete sequence Length = 58663 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 tttgtatttccataattaaaatat 428 ||||| |||||||||||||||||| Sbjct: 191 tttgtgtttccataattaaaatat 168
>gb|AY279553.2| Babesia bovis putative variant erythrocyte surface antigen-1a related protein (ves1-betaD) and putative variant erythrocyte surface antigen-1a (ves1-alphaC) genes, complete cds Length = 16836 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 667 cacatttacttttttatttc 686 |||||||||||||||||||| Sbjct: 16214 cacatttacttttttatttc 16233
>emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on chromosome 12, complete sequence Length = 235489 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aatagaaaaaatatatgata 128 |||||||||||||||||||| Sbjct: 104954 aatagaaaaaatatatgata 104935
>gb|AC151995.2| Mus musculus BAC clone RP23-152L21 from 16, complete sequence Length = 186505 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 670 atttacttttttatttcacttatt 693 ||||| |||||||||||||||||| Sbjct: 159250 atttaattttttatttcacttatt 159227
>gb|AC004564.1|AC004564 Drosophila melanogaster DNA sequence (P1 DS08012 (D224)), complete sequence Length = 67833 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 tttgtatttccataattaaaatat 428 ||||| |||||||||||||||||| Sbjct: 1418 tttgtgtttccataattaaaatat 1441
>gb|AC151721.2| Mus musculus BAC clone RP23-68E12 from 5, complete sequence Length = 218524 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 gtatttccataattaaaata 427 |||||||||||||||||||| Sbjct: 143482 gtatttccataattaaaata 143501
>emb|AL845432.7| Mouse DNA sequence from clone RP23-332H19 on chromosome 2, complete sequence Length = 195835 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 catccatacatgaacatgaa 283 |||||||||||||||||||| Sbjct: 166349 catccatacatgaacatgaa 166330
>gb|M38213.1|WUCMYSL Wuchereria bancrofti myosin-like protein gene, 3' end Length = 1824 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 catccatgtagtagtatata 529 |||||||||||||||||||| Sbjct: 1612 catccatgtagtagtatata 1593 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,972,373 Number of Sequences: 3902068 Number of extensions: 9972373 Number of successful extensions: 248630 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247855 Number of HSP's gapped (non-prelim): 775 length of query: 716 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 693 effective length of database: 17,143,297,704 effective search space: 11880305308872 effective search space used: 11880305308872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
