>TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein)|
          Length = 400

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +2

Query: 332 LKLVYGHDIRLGQMP---EKCSFHEL----REVVAKRFPSSKAVLMKYKDADGDLVTITC 490
           +K   G DIR  ++P   E  ++ EL    + V   +  S+  V +KYKD DGDL+TI  
Sbjct: 13  VKAQLGEDIR--RIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITIFD 70

Query: 491 TSELRLAEAC 520
           +S+L  A  C
Sbjct: 71  SSDLSFAIQC 80

>SCD1_SCHPO (P40995) Rho guanine nucleotide exchange factor scd1|
          Length = 872

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = +2

Query: 239  HKTVPALSVPSTQPVTETSLINRKVVTRWRPLKLVYGHDIRLGQMPEKCSFHELREVVAK 418
            H ++ + S  ++  V  T+ +  ++      L LV  HDI   ++  K   H+++     
Sbjct: 755  HTSLSSSSTSTSLSVRNTTNVKIRLRLHEVSLVLVVAHDITFDELLAKVE-HKIKLCGIL 813

Query: 419  RFPSSKAVLMKYKDADGDLVTITCTSELRLA-EACGVGMDVKEGDNNLPVLRLHI 580
            +      V +KY D DGD +TIT   ++ +A E C   +     +  +  + LH+
Sbjct: 814  KQAVPFRVRLKYVDEDGDFITITSDEDVLMAFETCTFELMDPVHNKGMDTVSLHV 868

>RDRP_P1AMV (Q07518) RNA replication protein (156 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1385

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -3

Query: 522 PQASANRSSDVQVMVTRSPSA-------SLYFINTALDDGKRFATTSLSSWKLHFSGICP 364
           P+ S +  S+ + ++++ P A       S Y+IN  L + K  A    +   ++ +  CP
Sbjct: 759 PRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLA----NKLGVYSANSCP 814

Query: 363 SLMSWPYTSLRGLHLVTTFLL 301
             +++ +  L GLHL+   L+
Sbjct: 815 LNVTYGFQPLPGLHLLVPSLM 835

>MP2K5_RAT (Q62862) Dual specificity mitogen-activated protein kinase kinase 5|
           (EC 2.7.12.2) (MAP kinase kinase 5) (MAPKK 5) (MAPK/ERK
           kinase 5)
          Length = 448

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 FHELREVVAKRFPSSKAVLMKYKDADGDLVTITCTSELR 505
           F ++ +V+ +  P +     +Y+D DGD +T+    E++
Sbjct: 41  FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 79

>MP2K5_MOUSE (Q9WVS7) Dual specificity mitogen-activated protein kinase kinase 5|
           (EC 2.7.12.2) (MAP kinase kinase 5) (MAPKK 5) (MAPK/ERK
           kinase 5)
          Length = 448

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 FHELREVVAKRFPSSKAVLMKYKDADGDLVTITCTSELR 505
           F ++ +V+ +  P +     +Y+D DGD +T+    E++
Sbjct: 41  FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 79

>MP2K5_HUMAN (Q13163) Dual specificity mitogen-activated protein kinase kinase 5|
           (EC 2.7.12.2) (MAP kinase kinase 5) (MAPKK 5) (MAPK/ERK
           kinase 5)
          Length = 438

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 FHELREVVAKRFPSSKAVLMKYKDADGDLVTITCTSELR 505
           F ++ +V+ +  P +     +Y+D DGD +T+    E++
Sbjct: 41  FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 79

>DNM3L_MOUSE (Q9CWR8) DNA (cytosine-5)-methyltransferase 3-like|
          Length = 421

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +2

Query: 281 VTETSLINRKVVTRWRPLKLVYGHDIRLGQMPEKC------SFHELREVVAKRFPSSKAV 442
           V + + + R+ V +W P  LVYG    LG   ++C       FH + +    R  S +  
Sbjct: 257 VEDVTNVVRRDVEKWGPFDLVYGSTQPLGSSCDRCPGWYMFQFHRILQYALPRQESQRPF 316

Query: 443 LMKYKD 460
              + D
Sbjct: 317 FWIFMD 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,956,007
Number of Sequences: 219361
Number of extensions: 1426921
Number of successful extensions: 4082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4082
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)