| Clone Name | bags23n18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470539.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 205 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 264 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 265 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 324 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 325 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 384 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 385 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 444 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 445 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 504 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 505 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 564 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 565 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 621 Score = 143 bits (72), Expect = 9e-31 Identities = 120/136 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 669 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 728 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 729 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 788 Query: 648 agattctagcattgga 663 |||||||||||||||| Sbjct: 789 agattctagcattgga 804
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 4187226 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 4187285 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 4187286 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 4187345 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 4187346 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 4187405 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 4187406 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 4187465 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 4187466 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 4187525 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 4187526 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 4187585 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 4187586 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 4187642 Score = 141 bits (71), Expect = 4e-30 Identities = 119/135 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 4187690 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 4187749 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 4187750 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 4187809 Query: 648 agattctagcattgg 662 ||||||||||||||| Sbjct: 4187810 agattctagcattgg 4187824
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 4187335 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 4187394 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 4187395 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 4187454 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 4187455 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 4187514 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 4187515 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 4187574 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 4187575 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 4187634 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 4187635 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 4187694 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 4187695 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 4187751 Score = 141 bits (71), Expect = 4e-30 Identities = 119/135 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 4187799 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 4187858 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 4187859 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 4187918 Query: 648 agattctagcattgg 662 ||||||||||||||| Sbjct: 4187919 agattctagcattgg 4187933
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 87863 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 87922 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 87923 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 87982 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 87983 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 88042 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 88043 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 88102 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 88103 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 88162 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 88163 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 88222 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 88223 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 88279 Score = 141 bits (71), Expect = 4e-30 Identities = 119/135 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 88327 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 88386 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 88387 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 88446 Query: 648 agattctagcattgg 662 ||||||||||||||| Sbjct: 88447 agattctagcattgg 88461
>dbj|AK070967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067F09, full insert sequence Length = 3799 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 2027 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 2086 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 2087 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 2146 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 2147 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 2206 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 2207 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 2266 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 2267 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 2326 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 2327 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 2386 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 2387 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 2443 Score = 143 bits (72), Expect = 9e-31 Identities = 120/136 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 2491 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 2550 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 2551 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 2610 Query: 648 agattctagcattgga 663 |||||||||||||||| Sbjct: 2611 agattctagcattgga 2626
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 15841 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 15900 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 15901 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 15960 Query: 199 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 258 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 15961 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 16020 Query: 259 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 315 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 16021 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 16080 Query: 316 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 375 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 16081 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 16140 Query: 376 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 435 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 16141 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 16200 Query: 436 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 16201 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 16257 Score = 141 bits (71), Expect = 4e-30 Identities = 119/135 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 16305 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 16364 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 16365 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 16424 Query: 648 agattctagcattgg 662 ||||||||||||||| Sbjct: 16425 agattctagcattgg 16439
>dbj|AK068487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N12, full insert sequence Length = 2169 Score = 240 bits (121), Expect = 5e-60 Identities = 205/233 (87%) Strand = Plus / Plus Query: 260 taccaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagatgata 319 ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct: 582 taccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagatgata 641 Query: 320 tcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctttcac 379 | |||||||||||||| ||||| || |||||||||| ||||||||||| | | |||||| Sbjct: 642 ttacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatttcac 701 Query: 380 tcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccagacat 439 |||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 702 tcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccagacat 761 Query: 440 caagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 492 | | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 762 cgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 814 Score = 143 bits (72), Expect = 9e-31 Identities = 120/136 (88%) Strand = Plus / Plus Query: 528 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 587 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 862 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 921 Query: 588 gacagtaagaaacggtggacaatatggtacaaacagaagggatgctagtcactacaatgg 647 ||||||||||| |||| ||||| | |||||||||||||||| || || |||||||| Sbjct: 922 aacagtaagaaatggtgtgcaatacaatgcaaacagaagggatgccagccattacaatgg 981 Query: 648 agattctagcattgga 663 |||||||||||||||| Sbjct: 982 agattctagcattgga 997 Score = 75.8 bits (38), Expect = 2e-10 Identities = 116/142 (81%) Strand = Plus / Plus Query: 79 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 138 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 398 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 457 Query: 139 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 198 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 458 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 517 Query: 199 acaaccaagattcctgtttcag 220 ||| ||| |||| |||| |||| Sbjct: 518 acatccaggatttctgtatcag 539
>emb|AL355304.12| Human DNA sequence from clone RP11-439L18 on chromosome 6q23.2-24.3 Contains two putative novel genes, part of a novel gene (FLJ32928) and two CpG islands, complete sequence Length = 76581 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 gaagaaaggaaaataagtttgataa 112 |||||||| |||||||||||||||| Sbjct: 10394 gaagaaagaaaaataagtttgataa 10418
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a CpG island, complete sequence Length = 68171 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aggaaaataagtttgataaac 114 ||||||||||||||||||||| Sbjct: 10126 aggaaaataagtttgataaac 10146
>emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chromosome 2, complete sequence Length = 185135 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 cattgaagaaaggaaaataag 104 ||||||||||||||||||||| Sbjct: 66471 cattgaagaaaggaaaataag 66451
>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 tcatgccttagatgtgtgagtgat 180 ||||||||||||||||| |||||| Sbjct: 38697 tcatgccttagatgtgtcagtgat 38674
>gb|AC132584.5| Mus musculus BAC clone RP24-346B15 from chromosome 7, complete sequence Length = 227856 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ggtaaagacagtaagaaacg 601 |||||||||||||||||||| Sbjct: 95714 ggtaaagacagtaagaaacg 95733
>gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosome 7, complete sequence Length = 217760 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ggtaaagacagtaagaaacg 601 |||||||||||||||||||| Sbjct: 43973 ggtaaagacagtaagaaacg 43992
>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194848 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ctttggtgcttcattatttt 424 |||||||||||||||||||| Sbjct: 155109 ctttggtgcttcattatttt 155090 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 actgcaagtactatgagtcc 566 |||||||||||||||||||| Sbjct: 13883 actgcaagtactatgagtcc 13902
>gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complete sequence Length = 126643 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 tgcttcattattttctccaa 430 |||||||||||||||||||| Sbjct: 62810 tgcttcattattttctccaa 62791
>emb|Z95329.1|HS522O2 Human DNA sequence from clone RP3-522O2 on chromosome 6q21 Contains the 3' end of the BVES gene for blood vessel epicardial substance and part of the gene for a novel protein similar to FLJ12457, complete sequence Length = 102837 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 tgaagaaaggaaaataagtttgat 110 |||||| ||||||||||||||||| Sbjct: 34102 tgaagagaggaaaataagtttgat 34125
>emb|AL596184.9| Human DNA sequence from clone CTD-2552G1 on chromosome 6, complete sequence Length = 65978 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 gaagaaaggaaaataagtttgataaaca 115 ||||||| ||||||||||||| |||||| Sbjct: 60338 gaagaaaagaaaataagtttggtaaaca 60311
>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a likely ortholog of mouse hepatoma-derived growth factor related protein 3 pseudogene (HDGFRP3), a novel protein similar to PAGE-5 protein (LOC203569), a novel protein similar to PAGE-5 protein (LOC139795), gene FLJ20434, a cytochrome c oxidase I (MTCO1) pseudogene, a G antigen, family D pseudogene and a CpG island, complete sequence Length = 130005 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tgtcaaattctgaattctgc 50 |||||||||||||||||||| Sbjct: 127627 tgtcaaattctgaattctgc 127646
>emb|AL449403.11| Human DNA sequence from clone RP11-569G13 on chromosome 9 Contains a eukaryotic translation initiation factor 4B (EIF4B) pseudogene and part of a novel gene, complete sequence Length = 173916 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 accatgcttctccatttgtt 471 |||||||||||||||||||| Sbjct: 63243 accatgcttctccatttgtt 63224
>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3 Contains a CpG island, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctgaattctgctgaattgct 59 |||||||||||||||||||| Sbjct: 24318 ctgaattctgctgaattgct 24299
>emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene, D7H11orf16 gene and C11orf17 gene Length = 234169 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ggtaaagacagtaagaaacg 601 |||||||||||||||||||| Sbjct: 165664 ggtaaagacagtaagaaacg 165645
>emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 in linkage group 17, complete sequence Length = 214728 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tgtgagtgatgcttcaaaca 190 |||||||||||||||||||| Sbjct: 4303 tgtgagtgatgcttcaaaca 4284
>gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 216930 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 actgcaagtactatgagtcc 566 |||||||||||||||||||| Sbjct: 96821 actgcaagtactatgagtcc 96840
>gb|AC073650.44| Homo sapiens 12 BAC RP11-44F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91200 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agagtcctcaaaggaaatca 238 |||||||||||||||||||| Sbjct: 48462 agagtcctcaaaggaaatca 48481
>gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, complete sequence Length = 177482 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 tcatgccttagatgtgtgagtgat 180 ||||||||||||||||| |||||| Sbjct: 136466 tcatgccttagatgtgtcagtgat 136443
>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete sequence Length = 221009 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 agaatgcagcaccatgcttc 461 |||||||||||||||||||| Sbjct: 19083 agaatgcagcaccatgcttc 19064
>gb|AC155244.2| Mus musculus BAC clone RP24-318B2 from 13, complete sequence Length = 198847 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 aaaggaaaataagtttgataaaca 115 |||||||||| ||||||||||||| Sbjct: 190828 aaaggaaaatgagtttgataaaca 190851
>gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, complete sequence Length = 170196 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tgcttcattattttctccaa 430 |||||||||||||||||||| Sbjct: 121681 tgcttcattattttctccaa 121700
>gb|AC154781.2| Mus musculus BAC clone RP24-463K5 from 16, complete sequence Length = 173258 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tgcttcattattttctccaa 430 |||||||||||||||||||| Sbjct: 33060 tgcttcattattttctccaa 33079
>gb|AC145082.10| Mus musculus chromosome 3, clone RP24-333B11, complete sequence Length = 168482 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 tcaagaatgcagcaccatgc 458 |||||||||||||||||||| Sbjct: 41067 tcaagaatgcagcaccatgc 41048
>gb|AC163743.6| Mus musculus BAC clone RP23-415J4 from chromosome 13, complete sequence Length = 198305 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 aaaggaaaataagtttgataaaca 115 |||||||||| ||||||||||||| Sbjct: 70908 aaaggaaaatgagtttgataaaca 70931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,948,944 Number of Sequences: 3902068 Number of extensions: 6948944 Number of successful extensions: 135600 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135398 Number of HSP's gapped (non-prelim): 188 length of query: 706 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 683 effective length of database: 17,143,297,704 effective search space: 11708872331832 effective search space used: 11708872331832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)