ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags24a09 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 183 bits (464), Expect = 4e-46 Identities = 89/169 (52%), Positives = 112/169 (66%) Frame = +2 Query: 101 PSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKK 280 PS + + + +N +DF + F+IKSYSEDDIH+SIKYN+W ST +GNK+ Sbjct: 382 PSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKR 441 Query: 281 LDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVK 460 LDAAY+ KG P++L FSVN SG F GVAEM VD+ W QDKW G F V+ Sbjct: 442 LDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVR 498 Query: 461 WHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEH 607 W VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+ Q+LKI + Sbjct: 499 WIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASY 547
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 182 bits (461), Expect = 9e-46 Identities = 85/153 (55%), Positives = 109/153 (71%) Frame = +2 Query: 149 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 328 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD A++ +KG P Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---P 433 Query: 329 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 508 ++L FSVN SG F GVAEM PVD+ + W QDKW G F VKW VKDVPNN L+HI Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIR 493 Query: 509 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEH 607 LENN+ KPVTNSRDTQ++ LE+ Q+LKI + Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIASY 526
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 182 bits (461), Expect = 9e-46 Identities = 87/149 (58%), Positives = 107/149 (71%) Frame = +2 Query: 149 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 328 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 329 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 508 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 509 LENNEGKPVTNSRDTQDINLEQGIQMLKI 595 LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKI 549
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 182 bits (461), Expect = 9e-46 Identities = 87/149 (58%), Positives = 107/149 (71%) Frame = +2 Query: 149 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 328 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 329 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 508 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 509 LENNEGKPVTNSRDTQDINLEQGIQMLKI 595 LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKI 549
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 182 bits (461), Expect = 9e-46 Identities = 87/149 (58%), Positives = 107/149 (71%) Frame = +2 Query: 149 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 328 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 329 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 508 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 509 LENNEGKPVTNSRDTQDINLEQGIQMLKI 595 LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKI 549
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 179 bits (455), Expect = 4e-45 Identities = 84/153 (54%), Positives = 110/153 (71%) Frame = +2 Query: 149 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 328 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD+A++ +KG P Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433 Query: 329 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 508 ++L FSVN SG F GVAEM PVD+ + W QDKW G F V+W VKDVPNN L+HI Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493 Query: 509 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEH 607 LENN+ KPVTNSRDTQ++ LE+ Q+LKI + Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSY 526
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 70.5 bits (171), Expect = 4e-12 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 6/177 (3%) Frame = +2 Query: 86 KGQTLPSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTT 265 K + L SS D K ++ L+D A+FF+IKS + +++ + VW++ Sbjct: 329 KHEKLSSSVRAVRKDQTSKLKYVLQD-------ARFFLIKSNNHENVSLAKAKGVWSTLP 381 Query: 266 NGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW------Q 427 KKL+ A++ A++ + L FSV SG+F G A ++ + +W Sbjct: 382 VNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMS 435 Query: 428 QDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 598 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 436 AKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 68.9 bits (167), Expect = 1e-11 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Frame = +2 Query: 182 DAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSG 361 DA+FF+IKS + +++ + VW++ KKL+ A++ A++ + L FSV SG Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410 Query: 362 QFVGVAEMTGPVDFEKTLEYW------QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNE 523 +F G A ++ + +W G F + W +++P H+ NE Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470 Query: 524 GKPVTNSRDTQDINLEQGIQMLKIF 598 KPV RD Q+I LE G Q+ +F Sbjct: 471 HKPVKIGRDGQEIELECGTQLCLLF 495
>LPXA_CHLCV (Q820F0) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine| O-acyltransferase (EC 2.3.1.129) (UDP-N-acetylglucosamine acyltransferase) Length = 279 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +2 Query: 197 VIKSYSEDDIHKSIKYN--VWASTTNGNKKLDAAYQEAQAK---GSSCPIFLFFSVNTSG 361 V+KSY+ D H +I +W S GNK D YQ + G +C I F++ TS Sbjct: 39 VVKSYAYIDGHTTIGKGTTIWPSAMIGNKPQDLKYQGEKTYVTIGENCEI-REFAIITSS 97 Query: 362 QFVGVAEMTG 391 F G G Sbjct: 98 TFEGTTVSIG 107
>CTNB_URECA (P35224) Beta-catenin| Length = 818 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 344 SVNT-SGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNI-LKHIVLEN 517 SV T GQ++ V EM P+D ++ WQQ+++ G ++ P ++ KH + + Sbjct: 15 SVGTPQGQYMDVGEMP-PMDAKQQTMLWQQNQYMGDSGIQSGATTQAPPSVSSKHGLDDM 73 Query: 518 NEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSK 616 + G+ + SR D +QG +E V + Sbjct: 74 DTGEGMDTSRMMFD--FDQGFSTQAFTQEQVDE 104
>ZFY16_MOUSE (Q80U44) Zinc finger FYVE domain-containing protein 16 (Endofin)| (Endosomal-associated FYVE domain protein) Length = 1528 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +2 Query: 62 GHTVTIAVKGQTLPSSENKNADDVADKAQ-FNLEDFPVQYDDAKFFVIKSYSEDDIHKSI 238 G + TIA+ + LP +E + D A K + F L DFP+Q + F+ ++ ED + + Sbjct: 292 GGSNTIAMPCK-LPENEGISPSDPASKDENFKLPDFPLQENRTSVFMKQTVKEDSRNLDL 350 Query: 239 KYN 247 K N Sbjct: 351 KDN 353
>Y939_SULTO (Q973G3) Hypothetical protein ST0939 precursor| Length = 709 Score = 30.4 bits (67), Expect = 4.3 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -2 Query: 522 SLFSRTMCLRMLLGTSLTMCHLTENEPFHLSCCQYSRVFSKSTGPVISATPTNCP 358 S FS+ + + + TS T+ HL + +++ Y+ + + + +ISATP++ P Sbjct: 349 SNFSQKVTINVGNVTSYTIKHLKDGVTYYIQIVPYNSLGNGTPSDIISATPSSVP 403
>IME1_YEAST (P21190) Meiosis-inducing protein 1| Length = 360 Score = 30.4 bits (67), Expect = 4.3 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Frame = +2 Query: 110 ENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDA 289 E+ N+ + +Q+ + FP D+ F + YS HKS N + +T+N N D Sbjct: 218 ESINSKNTDSYSQYQ-DQFPPHTDNIHSFNNRHYSN---HKSTNCNYYNNTSNNNNASDN 273 Query: 290 AYQ------EAQAKGSSCPIFLFFSVNTS 358 Y+ E Q P+ + F V S Sbjct: 274 VYEADPFIDEPQVPSYYYPLEIAFDVEKS 302
>MAD1_YARLI (Q6C452) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 704 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +2 Query: 272 NKKLDAAYQEAQAKGSSCPIFLFF-SVNTSGQFVGVAEMTGPVDFEKTLEYWQQDK 436 NKK+ AQ+ S F F N GQF GV + +F ++YW +DK Sbjct: 626 NKKVKVTSMYAQSDEDS---FTFLPDPNHKGQFAGVIDSPLTDEFSNIVDYWVKDK 678
>RIBD_CHLTR (O84735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 375 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -2 Query: 417 SRVFSKSTGPVISATPTNCPLVFTEKNKNIG 325 SRVF S+G + AT CP + +K K++G Sbjct: 238 SRVFDLSSGSTLFATTQQCPKEYIQKLKDLG 268
>SYE2_EHRRW (Q5HB98) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 470 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +2 Query: 50 QKAFGHTVTIAVKGQTLPS-----SENKNADDVADKAQFNLEDFPVQYDDAKFFVIKS 208 +K G+ V G L KN ++A+++ F +ED P+ +D +IKS Sbjct: 329 EKTIGYKVNTEKIGYLLNGINELKKRTKNLVNLANESLFYVEDIPISFDQESLIIIKS 386
>SYE2_EHRRG (Q5FGW4) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 470 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +2 Query: 50 QKAFGHTVTIAVKGQTLPS-----SENKNADDVADKAQFNLEDFPVQYDDAKFFVIKS 208 +K G+ V G L KN ++A+++ F +ED P+ +D +IKS Sbjct: 329 EKTIGYKVNTEKIGYLLNGINELKKRTKNLVNLANESLFYVEDIPISFDQESLIIIKS 386
>Y926_STRP8 (Q8P1E4) Hypothetical UPF0230 protein spyM18_0926| Length = 282 Score = 29.6 bits (65), Expect = 7.3 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 137 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 310 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 311 KGSSCPIFLFFSVNTSG 361 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y865_STRP1 (Q9A0A6) Hypothetical UPF0230 protein SPy0865/M5005_Spy0672| Length = 282 Score = 29.6 bits (65), Expect = 7.3 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 137 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 310 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 311 KGSSCPIFLFFSVNTSG 361 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y690_STRP6 (Q5XCN8) Hypothetical UPF0230 protein M6_Spy0690| Length = 282 Score = 29.6 bits (65), Expect = 7.3 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 137 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 310 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 311 KGSSCPIFLFFSVNTSG 361 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>CPXB_BACME (P14779) Bifunctional P-450:NADPH-P450 reductase (Cytochrome| P450(BM-3)) (P450BM-3) [Includes: Cytochrome P450 102 (EC 1.14.14.1); NADPH--cytochrome P450 reductase (EC 1.6.2.4)] Length = 1048 Score = 29.3 bits (64), Expect = 9.6 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Frame = +2 Query: 179 DDAKFFV--IKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVN 352 D+AK FV + S D++ K ++Y+V+ G+K YQ+ P F+ ++ Sbjct: 542 DNAKQFVDWLDQASADEV-KGVRYSVFGC---GDKNWATTYQKV-------PAFIDETLA 590 Query: 353 TSG--QFVGVAEMTGPVDFEKTLEYWQQDKWN 442 G E DFE T E W++ W+ Sbjct: 591 AKGAENIADRGEADASDDFEGTYEEWREHMWS 622
>Y586_STRP3 (Q8K7W6) Hypothetical UPF0230 protein SpyM3_0586/SPs1267| Length = 282 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 137 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 310 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSKNLPKTSQPSLSELDNLLGLLSS 78 Query: 311 KGSSCPIFLFFSVNTSG 361 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,235,047 Number of Sequences: 219361 Number of extensions: 1761419 Number of successful extensions: 5175 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5160 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
