ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23k18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine: L-methionine S-methyltransferase, complete cds Length = 3543 Score = 1275 bits (643), Expect = 0.0 Identities = 643/643 (100%) Strand = Plus / Plus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2084 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 2143 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2144 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 2203 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2204 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 2263 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2264 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 2323 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2324 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 2383 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2384 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 2443 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2444 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 2503 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2504 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 2563 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2564 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 2623 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2624 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 2683 Query: 602 gatacctcctcctctggtctggagttccaagccaccggctgca 644 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2684 gatacctcctcctctggtctggagttccaagccaccggctgca 2726
>ref|XM_475069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3255 Score = 511 bits (258), Expect = e-142 Identities = 537/630 (85%) Strand = Plus / Plus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||| || || |||||||||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 1987 gtgatacctcagaagatgataggattttcaagttcagctatgtctaccctaaaagaagct 2046 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 || |||||| |||||| |||| ||||| ||||||| ||||||||| | || |||||| Sbjct: 2047 gaatttttcattcctgactccaaaaaatccagtgtcattcatatggatttagatcgcagc 2106 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct: 2107 ttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgttaggcagaac 2166 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2167 attactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 2226 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||| |||||| ||| ||||||||| |||| || ||||||||||| || |||||| Sbjct: 2227 ggtttcccagcagatggttgttctgaaatattatatggcaacacctgtcttgcactcttc 2286 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 2287 aacaagcttgccctttgctgcatccaagaccagggcaccttacttttccccttgggcgct 2346 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 || || || |||||| |||||||||||||||||||||| || |||||||||| || Sbjct: 2347 aatggtcactatgtctcagcagcaaagtttgtgaatgcaaatacgctgactattccgaca 2406 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 ||| ||| |||||||||||||| |||||| | | |||||| |||||||| |||| || Sbjct: 2407 aagttagaatcaggcttcaagattgaaccacgggttctagctgacacacttgagacagta 2466 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 ||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 2467 tctaggccatgggtttatatttctggccccacaattaaccctactggtttcctgtacagt 2526 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 ||| ||||| |||||| |||||||| |||| | ||| ||||| ||||| || ||| Sbjct: 2527 gacagtgatattcaagagctcctttctgtttgtggtaaatatggagctagggtagtaata 2586 Query: 602 gatacctcctcctctggtctggagttccaa 631 |||||||||| |||||||||||| |||||| Sbjct: 2587 gatacctccttctctggtctggaattccaa 2616
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 511 bits (258), Expect = e-142 Identities = 537/630 (85%) Strand = Plus / Minus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||| || || |||||||||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 13965 gtgatacctcagaagatgataggattttcaagttcagctatgtctaccctaaaagaagct 13906 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 || |||||| |||||| |||| ||||| ||||||| ||||||||| | || |||||| Sbjct: 13905 gaatttttcattcctgactccaaaaaatccagtgtcattcatatggatttagatcgcagc 13846 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct: 13845 ttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgttaggcagaac 13786 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13785 attactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 13726 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||| |||||| ||| ||||||||| |||| || ||||||||||| || |||||| Sbjct: 13725 ggtttcccagcagatggttgttctgaaatattatatggcaacacctgtcttgcactcttc 13666 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 13665 aacaagcttgccctttgctgcatccaagaccagggcaccttacttttccccttgggcgct 13606 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 || || || |||||| |||||||||||||||||||||| || |||||||||| || Sbjct: 13605 aatggtcactatgtctcagcagcaaagtttgtgaatgcaaatacgctgactattccgaca 13546 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 ||| ||| |||||||||||||| |||||| | | |||||| |||||||| |||| || Sbjct: 13545 aagttagaatcaggcttcaagattgaaccacgggttctagctgacacacttgagacagta 13486 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 ||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 13485 tctaggccatgggtttatatttctggccccacaattaaccctactggtttcctgtacagt 13426 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 ||| ||||| |||||| |||||||| |||| | ||| ||||| ||||| || ||| Sbjct: 13425 gacagtgatattcaagagctcctttctgtttgtggtaaatatggagctagggtagtaata 13366 Query: 602 gatacctcctcctctggtctggagttccaa 631 |||||||||| |||||||||||| |||||| Sbjct: 13365 gatacctccttctctggtctggaattccaa 13336
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 511 bits (258), Expect = e-142 Identities = 537/630 (85%) Strand = Plus / Minus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||| || || |||||||||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 238445 gtgatacctcagaagatgataggattttcaagttcagctatgtctaccctaaaagaagct 238386 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 || |||||| |||||| |||| ||||| ||||||| ||||||||| | || |||||| Sbjct: 238385 gaatttttcattcctgactccaaaaaatccagtgtcattcatatggatttagatcgcagc 238326 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct: 238325 ttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgttaggcagaac 238266 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238265 attactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 238206 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||| |||||| ||| ||||||||| |||| || ||||||||||| || |||||| Sbjct: 238205 ggtttcccagcagatggttgttctgaaatattatatggcaacacctgtcttgcactcttc 238146 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 238145 aacaagcttgccctttgctgcatccaagaccagggcaccttacttttccccttgggcgct 238086 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 || || || |||||| |||||||||||||||||||||| || |||||||||| || Sbjct: 238085 aatggtcactatgtctcagcagcaaagtttgtgaatgcaaatacgctgactattccgaca 238026 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 ||| ||| |||||||||||||| |||||| | | |||||| |||||||| |||| || Sbjct: 238025 aagttagaatcaggcttcaagattgaaccacgggttctagctgacacacttgagacagta 237966 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 ||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 237965 tctaggccatgggtttatatttctggccccacaattaaccctactggtttcctgtacagt 237906 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 ||| ||||| |||||| |||||||| |||| | ||| ||||| ||||| || ||| Sbjct: 237905 gacagtgatattcaagagctcctttctgtttgtggtaaatatggagctagggtagtaata 237846 Query: 602 gatacctcctcctctggtctggagttccaa 631 |||||||||| |||||||||||| |||||| Sbjct: 237845 gatacctccttctctggtctggaattccaa 237816
>dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full insert sequence Length = 3542 Score = 511 bits (258), Expect = e-142 Identities = 537/630 (85%) Strand = Plus / Plus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||| || || |||||||||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 2065 gtgatacctcagaagatgataggattttcaagttcagctatgtctaccctaaaagaagct 2124 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 || |||||| |||||| |||| ||||| ||||||| ||||||||| | || |||||| Sbjct: 2125 gaatttttcattcctgactccaaaaaatccagtgtcattcatatggatttagatcgcagc 2184 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct: 2185 ttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgttaggcagaac 2244 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2245 attactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 2304 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||| |||||| ||| ||||||||| |||| || ||||||||||| || |||||| Sbjct: 2305 ggtttcccagcagatggttgttctgaaatattatatggcaacacctgtcttgcactcttc 2364 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 2365 aacaagcttgccctttgctgcatccaagaccagggcaccttacttttccccttgggcgct 2424 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 || || || |||||| |||||||||||||||||||||| || |||||||||| || Sbjct: 2425 aatggtcactatgtctcagcagcaaagtttgtgaatgcaaatacgctgactattccgaca 2484 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 ||| ||| |||||||||||||| |||||| | | |||||| |||||||| |||| || Sbjct: 2485 aagttagaatcaggcttcaagattgaaccacgggttctagctgacacacttgagacagta 2544 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 ||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 2545 tctaggccatgggtttatatttctggccccacaattaaccctactggtttcctgtacagt 2604 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 ||| ||||| |||||| |||||||| |||| | ||| ||||| ||||| || ||| Sbjct: 2605 gacagtgatattcaagagctcctttctgtttgtggtaaatatggagctagggtagtaata 2664 Query: 602 gatacctcctcctctggtctggagttccaa 631 |||||||||| |||||||||||| |||||| Sbjct: 2665 gatacctccttctctggtctggaattccaa 2694
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 511 bits (258), Expect = e-142 Identities = 537/630 (85%) Strand = Plus / Minus Query: 2 gtgatatctaaggagatgatagggttttcaagttcagctatgtccaccctagaaggagct 61 |||||| || || |||||||||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 120629 gtgatacctcagaagatgataggattttcaagttcagctatgtctaccctaaaagaagct 120570 Query: 62 gagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgcagc 121 || |||||| |||||| |||| ||||| ||||||| ||||||||| | || |||||| Sbjct: 120569 gaatttttcattcctgactccaaaaaatccagtgtcattcatatggatttagatcgcagc 120510 Query: 122 ttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcagaac 181 ||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| Sbjct: 120509 ttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgttaggcagaac 120450 Query: 182 atcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 241 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120449 attactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaagatagctat 120390 Query: 242 ggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctcttc 301 |||||| |||||| ||| ||||||||| |||| || ||||||||||| || |||||| Sbjct: 120389 ggtttcccagcagatggttgttctgaaatattatatggcaacacctgtcttgcactcttc 120330 Query: 302 aacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaacc 361 |||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 120329 aacaagcttgccctttgctgcatccaagaccagggcaccttacttttccccttgggcgct 120270 Query: 362 aacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaacg 421 || || || |||||| |||||||||||||||||||||| || |||||||||| || Sbjct: 120269 aatggtcactatgtctcagcagcaaagtttgtgaatgcaaatacgctgactattccgaca 120210 Query: 422 aaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaaggtg 481 ||| ||| |||||||||||||| |||||| | | |||||| |||||||| |||| || Sbjct: 120209 aagttagaatcaggcttcaagattgaaccacgggttctagctgacacacttgagacagta 120150 Query: 482 tctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtacagt 541 ||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 120149 tctaggccatgggtttatatttctggccccacaattaaccctactggtttcctgtacagt 120090 Query: 542 gacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtgata 601 ||| ||||| |||||| |||||||| |||| | ||| ||||| ||||| || ||| Sbjct: 120089 gacagtgatattcaagagctcctttctgtttgtggtaaatatggagctagggtagtaata 120030 Query: 602 gatacctcctcctctggtctggagttccaa 631 |||||||||| |||||||||||| |||||| Sbjct: 120029 gatacctccttctctggtctggaattccaa 120000
>gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methionine S-methyltransferase mRNA, complete cds Length = 3527 Score = 299 bits (151), Expect = 6e-78 Identities = 463/567 (81%) Strand = Plus / Plus Query: 60 ctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctggaccgca 119 |||| ||||||||||||||||| |||||| | | || ||||||||| | || |||| Sbjct: 2078 ctgaatttttcgttcctggttcagctgaatccagcattattcatatggatttagatcgca 2137 Query: 120 gcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgttcgtcaga 179 ||||| ||||||||||||| ||||| || || || |||| ||||||||||| | |||| Sbjct: 2138 gcttcctgccagtaccttcagcagtgaatgcgtctgtttttgaaagttttgtcaggcaga 2197 Query: 180 acatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaagatagct 239 ||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| Sbjct: 2198 acatcactgattctgaaaccgatgtccgttccagcatccaacagctggtgaaagacagct 2257 Query: 240 atggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctcgcgctct 299 ||||||| || |||| ||| | | |||||||| ||||| ||||||| | || |||| Sbjct: 2258 atggtttatccgcagctggttgtgcagaaattatctacggaaacacctccgtagcactct 2317 Query: 300 tcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttccccttgggaa 359 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2318 tcaacaagctcgtcctttgttgcatgcaagaacagggcaccttgcttttccccttgggca 2377 Query: 360 ccaacgggcattatgtcaacgcagcaaagtttgtgaatgcaaccaccttgactattccaa 419 |||| || || || ||| |||||||||||||||||| || | |||| ||||||| || | Sbjct: 2378 ccaatggccactacgtctccgcagcaaagtttgtgaacgctagcaccgtgactataccga 2437 Query: 420 cgaaggcagattcaggcttcaagatcgaaccaagtgctctagccgacacactagagaagg 479 | || | |||||| |||| |||||| || | | |||||| ||||| || |||| | Sbjct: 2438 caaatcccagttcagggttcaggatcgagcccaaggttctagctgacactcttaagaatg 2497 Query: 480 tgtctcagccgtgggtctatatttctggccccacaatcaaccctactggcttcctgtaca 539 | |||| ||||||||| ||| ||| |||||||| ||||||||||||||||| ||||||| Sbjct: 2498 tatctcggccgtgggtgtatgtttgcggccccacgatcaaccctactggctttctgtaca 2557 Query: 540 gtgacgacgatatagcagagctgctttctgtctgtgcgacatacggagccagggtggtga 599 ||||| || || ||||||||| || || || || ||| ||||||||||| |||| Sbjct: 2558 gtgacagtgacatccgagagctgctctccgtatgcgctgaatatggagccagggtagtga 2617 Query: 600 tagatacctcctcctctggtctggagt 626 ||||||| |||| |||||| ||||||| Sbjct: 2618 tagatacatccttctctggcctggagt 2644
>gb|AY109558.1| Zea mays CL1511_1 mRNA sequence Length = 3458 Score = 268 bits (135), Expect = 2e-68 Identities = 421/518 (81%) Strand = Plus / Plus Query: 101 catatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttc 160 ||||||||| | || ||||||||| ||||||||||||| ||||| || || || Sbjct: 2119 catatggatttagatcgcagcttcctgccagtaccttcagcagtgaatgcgtctgnnnnn 2178 Query: 161 gaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttccagcattcag 220 ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 2179 gaaagttttgtcaggcagaacatcactgattctgaaaccgatgtccgttccagcatccaa 2238 Query: 221 cagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaattatatacggg 280 |||||||||||||| ||||||||||| || |||| ||| | | |||||||| ||||| Sbjct: 2239 cagctggtgaaagacagctatggtttatccgcagctggttgtgcagaaattatctacgga 2298 Query: 281 aacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcacc 340 ||||||| | || |||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 2299 aacacctccgtagcactcttcaacaagctcgtcctttgttgcatgcaagaacagggcacc 2358 Query: 341 ttgcttttccccttgggaaccaacgggcattatgtcaacgcagcaaagtttgtgaatgca 400 ||||||||||||||||| ||||| || || || ||| |||||||||||||||||| || Sbjct: 2359 ttgcttttccccttgggcaccaatggccactacgtctccgcagcaaagtttgtgaacgct 2418 Query: 401 accaccttgactattccaacgaaggcagattcaggcttcaagatcgaaccaagtgctcta 460 | |||| ||||||| || || || | |||||| |||| |||||| || | | |||| Sbjct: 2419 agcaccgtgactataccgacaaatcccagttcagggttcaggatcgagcccaaggttcta 2478 Query: 461 gccgacacactagagaaggtgtctcagccgtgggtctatatttctggccccacaatcaac 520 || ||||| || |||| || |||| ||||||||| ||| ||| |||||||| |||||| Sbjct: 2479 gctgacactcttaagaatgtatctcggccgtgggtgtatgtttgcggccccacgatcaac 2538 Query: 521 cctactggcttcctgtacagtgacgacgatatagcagagctgctttctgtctgtgcgaca 580 ||||||||||| |||||||||||| || || ||||||||| || || || || | Sbjct: 2539 cctactggctttctgtacagtgacagtgacatccgagagctgctctccgtatgcgctgaa 2598 Query: 581 tacggagccagggtggtgatagatacctcctcctctgg 618 || ||||||||||| ||||||||||| |||| |||||| Sbjct: 2599 tatggagccagggtagtgatagatacatccttctctgg 2636
>gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete sequence Length = 135244 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 491 tgggtctatatttctggccccacaatcaaccctactggctt 531 ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 91642 tgggtgtatatttctggacctacaatcaaccccactggctt 91602
>gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete sequence Length = 125098 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 491 tgggtctatatttctggccccacaatcaaccctactggctt 531 ||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 91435 tgggtgtatatttctggacctacaatcaaccccactggctt 91395
>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete sequence Length = 404829 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 tccaccctagaaggagctgag 64 ||||||||||||||||||||| Sbjct: 94399 tccaccctagaaggagctgag 94419
>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence Length = 245594 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 atgtccaccctagaaggagc 60 |||||||||||||||||||| Sbjct: 53023 atgtccaccctagaaggagc 53042
>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence Length = 166292 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 atgtccaccctagaaggagc 60 |||||||||||||||||||| Sbjct: 159767 atgtccaccctagaaggagc 159786
>ref|NM_001030982.1| Gallus gallus Rap guanine nucleotide exchange factor (GEF) 5 (RAPGEF5), mRNA Length = 2398 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cactgattctgaaactgatg 203 |||||||||||||||||||| Sbjct: 290 cactgattctgaaactgatg 309
>emb|AL157833.14| Human DNA sequence from clone RP11-205K10 on chromosome 10 Contains part of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, complete sequence Length = 21344 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgatatctaaggagatgata 22 |||||||||||||||||||| Sbjct: 14600 tgatatctaaggagatgata 14619
>gb|AC113932.2| Homo sapiens chromosome 3 clone RP11-757H2, complete sequence Length = 194645 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ctggccccacaatcaaccct 523 |||||||||||||||||||| Sbjct: 102763 ctggccccacaatcaaccct 102782
>ref|XM_776000.1| PREDICTED: Strongylocentrotus purpuratus similar to telomerase reverse transcriptase isoform 2 (LOC575612), mRNA Length = 1008 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 agagctgctttctgtctgtg 575 |||||||||||||||||||| Sbjct: 923 agagctgctttctgtctgtg 904
>emb|AJ851807.1| Gallus gallus mRNA for hypothetical protein, clone 35j20 Length = 2398 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cactgattctgaaactgatg 203 |||||||||||||||||||| Sbjct: 290 cactgattctgaaactgatg 309
>emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-147K15, complete sequence Length = 197298 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgcatgcaagaacagggcac 339 |||||||||||||||||||| Sbjct: 89869 tgcatgcaagaacagggcac 89850
>gb|AC093725.3| Homo sapiens BAC clone RP11-4O3 from 4, complete sequence Length = 163796 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gagatgatagggttttcaag 33 |||||||||||||||||||| Sbjct: 119580 gagatgatagggttttcaag 119599
>gb|AC138059.3| Homo sapiens chromosome 3 clone RP11-195M4, complete sequence Length = 191397 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgcatgcaagaacagggcac 339 |||||||||||||||||||| Sbjct: 160004 tgcatgcaagaacagggcac 159985
>gb|AC137673.2| Homo sapiens chromosome 3 clone CTD-2195M5, complete sequence Length = 139791 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgcatgcaagaacagggcac 339 |||||||||||||||||||| Sbjct: 55519 tgcatgcaagaacagggcac 55500
>gb|M17169.1|CRUGRP Chinese hamster glucose-regulated protein GRP78 mRNA, complete cds Length = 2334 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 attcagcagctggtgaaaga 234 |||||||||||||||||||| Sbjct: 1261 attcagcagctggtgaaaga 1280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,145,087 Number of Sequences: 3902068 Number of extensions: 5145087 Number of successful extensions: 90642 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90575 Number of HSP's gapped (non-prelim): 55 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
