ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23k12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E16, full insert sequence Length = 1374 Score = 236 bits (119), Expect = 6e-59 Identities = 292/350 (83%) Strand = Plus / Plus Query: 38 gaagtatacatgttttgttgcggtaaagaatgatgacgttacacgtactgtgctgaatag 97 |||||||| ||||||||||||||||| |||||||| | | || ||||| ||||||| Sbjct: 632 gaagtatatctgttttgttgcggtaaaaaatgatgatctcaagcgaactgttttgaatag 691 Query: 98 tgttgttggtacggtagatctgtgtgtcaggcatcctctatatggggagacatatcccgc 157 || ||||| || | ||| | ||| | ||||||||||| |||||||||||| ||| || Sbjct: 692 cgtcgttggcaccctggatgtttgtataaggcatcctctgcatggggagacatttcctgc 751 Query: 158 ggagcctggaaacatgccattttactctagaatctatcagccagatcagccaaaatttgg 217 |||||||||||| ||||| | | |||||| || ||||||||||||||||| ||||| Sbjct: 752 ggagcctggaaagtcatcatttcattgtagaatataccagccagatcagccaaagtttgg 811 Query: 218 atatttaaccaacgttngtgttgctaagtatgcacggcgtcaagggattgccagcaacat 277 ||| | || || ||| |||||||||| |||||||||||||||||||| |||||||| || Sbjct: 812 gtatctgacaaatgtttgtgttgctaaatatgcacggcgtcaagggatcgccagcaatat 871 Query: 278 gttgttattggccattgatgccgcaagactcgatggtgctgaaagtatttatattcatgt 337 ||||||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||||| Sbjct: 872 gttgttactggccatagatgctgcaagactcaatggtgctgaagaagtttatattcatgt 931 Query: 338 acataaggataacttgccagctcggaggctctatgatcatataggattca 387 ||||||||||| | ||||||||||||||||||||||| |||||||||| Sbjct: 932 gcataaggataatctaccagctcggaggctctatgatcagataggattca 981
>gb|AY104441.1| Zea mays PCO109208 mRNA sequence Length = 614 Score = 218 bits (110), Expect = 2e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 38 gaagtatacatgttttgttgcggtaaagaatgatgacgttacacgtactgtgctgaatag 97 |||||||| ||| |||| ||||||||||| |||||| | | || ||||| |||||||| Sbjct: 302 gaagtatatctgtcttgtcgcggtaaagaacgatgacatcaggcgaactgtcctgaatag 361 Query: 98 tgttgttggtacggtagatctgtgtgtcaggcatcctctatatggggagacatatcccgc 157 |||||||||||| ||||| | ||||| |||||||||||||||||||||| || ||| | Sbjct: 362 tgttgttggtaccttagatgtatgtgtaaggcatcctctatatggggagaaatttcctga 421 Query: 158 ggagcctggaaacatgccattttactctagaatctatcagccagatcagccaaaatttgg 217 |||||||||||| | | || ||| | |||| |||||||| ||||||||||||||||| Sbjct: 422 ggagcctggaaaaccgtctcttcactgtcgaatttatcagcctgatcagccaaaatttgg 481 Query: 218 atatttaaccaacgttngtgttgctaagtatgcacggcgtcaagggattgccagcaacat 277 ||| |||| || || |||||||||| |||||| |||||||||||||||| |||||||| Sbjct: 482 gtatgtaacaaatgtatgtgttgctaaatatgcaaggcgtcaagggattgctagcaacat 541 Query: 278 gttgttattggccattgatgccgcaagactcgatggtgctgaaagtatttatattcatgt 337 | ||||||||||||| ||||| |||| ||| | |||||||||| |||||| |||||||| Sbjct: 542 gctgttattggccatagatgctgcaaaacttaacggtgctgaaaatatttacattcatgt 601 Query: 338 acataaggataac 350 ||||| |||||| Sbjct: 602 gcataaagataac 614
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 7e-28 Identities = 114/130 (87%) Strand = Plus / Plus Query: 185 tagaatctatcagccagatcagccaaaatttggatatttaaccaacgttngtgttgctaa 244 |||||| || ||||||||||||||||| ||||| ||| | || || ||| |||||||||| Sbjct: 4065915 tagaatataccagccagatcagccaaagtttgggtatctgacaaatgtttgtgttgctaa 4065974 Query: 245 gtatgcacggcgtcaagggattgccagcaacatgttgttattggccattgatgccgcaag 304 |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| Sbjct: 4065975 atatgcacggcgtcaagggatcgccagcaatatgttgttactggccatagatgctgcaag 4066034 Query: 305 actcgatggt 314 |||| ||||| Sbjct: 4066035 actcaatggt 4066044 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 325 tttatattcatgtacataaggataacttgccagctcggaggctctatgatcatataggat 384 ||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct: 4066168 tttatattcatgtgcataaggataatctaccagctcggaggctctatgatcagataggat 4066227 Query: 385 tca 387 ||| Sbjct: 4066228 tca 4066230
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 133 bits (67), Expect = 7e-28 Identities = 114/130 (87%) Strand = Plus / Minus Query: 185 tagaatctatcagccagatcagccaaaatttggatatttaaccaacgttngtgttgctaa 244 |||||| || ||||||||||||||||| ||||| ||| | || || ||| |||||||||| Sbjct: 33453 tagaatataccagccagatcagccaaagtttgggtatctgacaaatgtttgtgttgctaa 33394 Query: 245 gtatgcacggcgtcaagggattgccagcaacatgttgttattggccattgatgccgcaag 304 |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| Sbjct: 33393 atatgcacggcgtcaagggatcgccagcaatatgttgttactggccatagatgctgcaag 33334 Query: 305 actcgatggt 314 |||| ||||| Sbjct: 33333 actcaatggt 33324 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 325 tttatattcatgtacataaggataacttgccagctcggaggctctatgatcatataggat 384 ||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct: 33200 tttatattcatgtgcataaggataatctaccagctcggaggctctatgatcagataggat 33141 Query: 385 tca 387 ||| Sbjct: 33140 tca 33138
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 7e-28 Identities = 114/130 (87%) Strand = Plus / Plus Query: 185 tagaatctatcagccagatcagccaaaatttggatatttaaccaacgttngtgttgctaa 244 |||||| || ||||||||||||||||| ||||| ||| | || || ||| |||||||||| Sbjct: 4066026 tagaatataccagccagatcagccaaagtttgggtatctgacaaatgtttgtgttgctaa 4066085 Query: 245 gtatgcacggcgtcaagggattgccagcaacatgttgttattggccattgatgccgcaag 304 |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| Sbjct: 4066086 atatgcacggcgtcaagggatcgccagcaatatgttgttactggccatagatgctgcaag 4066145 Query: 305 actcgatggt 314 |||| ||||| Sbjct: 4066146 actcaatggt 4066155 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 325 tttatattcatgtacataaggataacttgccagctcggaggctctatgatcatataggat 384 ||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct: 4066279 tttatattcatgtgcataaggataatctaccagctcggaggctctatgatcagataggat 4066338 Query: 385 tca 387 ||| Sbjct: 4066339 tca 4066341
>gb|AC097457.2| Homo sapiens BAC clone RP11-3J1 from 4, complete sequence Length = 120836 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 atcttgcacatgataaaaactt 478 |||||||||||||||||||||| Sbjct: 30713 atcttgcacatgataaaaactt 30692
>emb|AL357566.12| Human DNA sequence from clone RP11-513B7 on chromosome 1, complete sequence Length = 61004 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 546 aatgcttcaatattttttgtt 566 ||||||||||||||||||||| Sbjct: 5702 aatgcttcaatattttttgtt 5722
>emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, complete sequence Length = 261943 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtatttatattcatgtacata 342 ||||||||||||||||||||| Sbjct: 109682 gtatttatattcatgtacata 109702
>gb|AC117535.2| Homo sapiens chromosome 5 clone RP11-937M12, complete sequence Length = 176581 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 tatttatattcatgtacataa 343 ||||||||||||||||||||| Sbjct: 19919 tatttatattcatgtacataa 19939
>gb|AC113401.2| Homo sapiens chromosome 5 clone RP11-454E20, complete sequence Length = 130491 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 tatttatattcatgtacataa 343 ||||||||||||||||||||| Sbjct: 100385 tatttatattcatgtacataa 100405
>ref|XM_630227.1| Dictyostelium discoideum hypothetical protein (DDB0183999), partial mRNA Length = 2085 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aaaacttgtaaagttcaaaa 491 |||||||||||||||||||| Sbjct: 655 aaaacttgtaaagttcaaaa 674
>gb|AY887091.1| HIV-1 isolate M12653 from Rwanda gag protein gene, partial cds Length = 1505 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 377 cagccagatcagccaaaatt 396
>emb|AL162388.8| Human DNA sequence from clone RP11-373A6 on chromosome 9 Contains a NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene and 2 CpG islands, complete sequence Length = 173881 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 catgataaaaacttgtaaagttca 488 ||||||||||||| |||||||||| Sbjct: 119338 catgataaaaactggtaaagttca 119315
>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0 Length = 200576 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aaaacttgtaaagttcaaaa 491 |||||||||||||||||||| Sbjct: 75556 aaaacttgtaaagttcaaaa 75575
>emb|AL161538.2|ATCHRIV38 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 38 Length = 198944 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aaaacttgtaaagttcaaaa 491 |||||||||||||||||||| Sbjct: 15104 aaaacttgtaaagttcaaaa 15123
>emb|AJ437053.1|HIM437053 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g28s3 Length = 1530 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>emb|AJ437052.1|HIM437052 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g28s2 Length = 1530 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>emb|AJ437051.1|HIM437051 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g28s1 Length = 1530 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>emb|AJ437050.1|HIM437050 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g27s3 Length = 1512 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>emb|AJ437049.1|HIM437049 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g27s2 Length = 1512 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>emb|AJ437048.1|HIM437048 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g27s1 Length = 1512 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 390 cagccagatcagccaaaatt 409
>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence Length = 149660 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 atcagccagatcagccaaaa 212 |||||||||||||||||||| Sbjct: 50699 atcagccagatcagccaaaa 50680
>gb|BC108126.1| Bos taurus cDNA clone MGC:128648 IMAGE:7986830, complete cds Length = 4072 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ggaagtatacatgttttgtt 56 |||||||||||||||||||| Sbjct: 2976 ggaagtatacatgttttgtt 2995
>gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 158816 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aaaacttgtaaagttcaaaa 491 |||||||||||||||||||| Sbjct: 33737 aaaacttgtaaagttcaaaa 33756
>gb|AC099666.2| Homo sapiens chromosome 3 clone RP11-215K24, complete sequence Length = 152755 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 cagcaacatgttgttattggccat 292 ||||||||||||||||||| |||| Sbjct: 145890 cagcaacatgttgttattgtccat 145913
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaagtatttatattcatgta 338 |||||||||||||||||||| Sbjct: 1000015 aaagtatttatattcatgta 1000034
>gb|DQ404455.1| Metschnikowia sp. ST-96 26S ribosomal RNA gene, partial sequence Length = 479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 atgtgtgtgggggcttttca 541 |||||||||||||||||||| Sbjct: 96 atgtgtgtgggggcttttca 77
>emb|BX321868.13| Zebrafish DNA sequence from clone RP71-41I21, complete sequence Length = 135717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ggaatgttgttgatgtgtgt 529 |||||||||||||||||||| Sbjct: 96579 ggaatgttgttgatgtgtgt 96598
>gb|AF409870.1|AF409870 HIV-1 isolate NA21LU09c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409869.1|AF409869 HIV-1 isolate NA21LU10c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409868.1|AF409868 HIV-1 isolate NA21LU08c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409867.1|AF409867 HIV-1 isolate NA21LU07c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409866.1|AF409866 HIV-1 isolate NA21LU06c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409864.1|AF409864 HIV-1 isolate NA21LU04c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409863.1|AF409863 HIV-1 isolate NA21LU03c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409862.1|AF409862 HIV-1 isolate NA21LU02c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409861.1|AF409861 HIV-1 isolate NA21LU01c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409860.1|AF409860 HIV-1 isolate NA21LN11c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409859.1|AF409859 HIV-1 isolate NA21LN10c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409858.1|AF409858 HIV-1 isolate NA21LN09c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409857.1|AF409857 HIV-1 isolate NA21LN08c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409856.1|AF409856 HIV-1 isolate NA21LN07c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409855.1|AF409855 HIV-1 isolate NA21LN06c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409854.1|AF409854 HIV-1 isolate NA21LN05c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409853.1|AF409853 HIV-1 isolate NA21LN04c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409852.1|AF409852 HIV-1 isolate NA21LN03c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409851.1|AF409851 HIV-1 isolate NA21LN02c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409850.1|AF409850 HIV-1 isolate NA21LN01c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409834.1|AF409834 HIV-1 isolate NA21CO05c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409830.1|AF409830 HIV-1 isolate NA21CO01c from United Kingdom gag protein (gag) gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF409710.1|AF409710 HIV-1 isolate NA284LNG5 from United Kingdom gag protein (gag) gene, partial cds Length = 390 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 306 cagccagatcagccaaaatt 325
>gb|AF409709.1|AF409709 HIV-1 isolate NA284LNG4 from United Kingdom gag protein (gag) gene, partial cds Length = 390 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 306 cagccagatcagccaaaatt 325
>gb|AF409708.1|AF409708 HIV-1 isolate NA284LNG3 from United Kingdom gag protein (gag) gene, partial cds Length = 390 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 306 cagccagatcagccaaaatt 325
>dbj|AK051150.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130006O04 product:unclassifiable, full insert sequence Length = 1721 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 1116 tctgtgtgtcaggcatcctc 1135
>gb|AF084741.1|AF084741 HIV-1 pair E, mother, clone 5 p17 matrix (gag) gene, partial cds Length = 402 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 381 cagccagatcagccaaaatt 400
>gb|AF281746.1|AF281746 HIV-1 isolate GV-h6 from USA nonfunctional gag polyprotein (gag) gene, partial sequence Length = 1195 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 375 cagccagatcagccaaaatt 394
>gb|AF174882.1|AF174882 HIV-1 isolate LN2 patient NA021 from United Kingdom gag protein (gag) gene, partial cds Length = 412 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF174881.1|AF174881 HIV-1 isolate LN1 patient NA021 from United Kingdom gag protein (gag) gene, partial cds Length = 396 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>gb|AF174870.1|AF174870 HIV-1 isolate LT patient NA021 from United Kingdom gag protein (gag) gene, partial cds Length = 396 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 336 cagccagatcagccaaaatt 355
>dbj|AK034669.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430022M17 product:unclassifiable, full insert sequence Length = 2849 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 1837 tctgtgtgtcaggcatcctc 1856
>gb|DQ308160.1| HIV-1 isolate 95DKAY9509CB09 from Denmark gag protein (gag) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 285 cagccagatcagccaaaatt 304
>dbj|AK043885.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830046G01 product:unclassifiable, full insert sequence Length = 2270 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 1589 tctgtgtgtcaggcatcctc 1608
>dbj|AK053150.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030017B05 product:hypothetical protein, full insert sequence Length = 2549 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 1536 tctgtgtgtcaggcatcctc 1555
>gb|AF051026.1|AF051026 HIV-1 isolate child 3 clone BC3_5D.1 from United Kingdom MA-p17 (gag) gene, partial cds Length = 366 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 307 cagccagatcagccaaaatt 326
>gb|BC094331.1| Mus musculus cDNA clone IMAGE:6815606 Length = 2306 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 1239 tctgtgtgtcaggcatcctc 1258
>gb|AF212293.1| HIV-1 isolate 94RW13 from Rwanda gag protein (gag) and pol protein (pol) genes, partial cds Length = 2561 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 309 cagccagatcagccaaaatt 328
>gb|AF196686.1|AF196686 HIV-1 isolate 94RW13 from Rwanda, gag protein (gag) gene, partial cds Length = 732 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 309 cagccagatcagccaaaatt 328
>dbj|AK173173.1| Mus musculus mRNA for mKIAA1439 protein Length = 6197 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 5154 tctgtgtgtcaggcatcctc 5173
>emb|BX511028.13| Zebrafish DNA sequence from clone DKEY-161N17 in linkage group 20, complete sequence Length = 225010 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ggaatgttgttgatgtgtgt 529 |||||||||||||||||||| Sbjct: 76734 ggaatgttgttgatgtgtgt 76753
>gb|AY103235.1| HIV-1 clone TL-8 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103234.1| HIV-1 clone TL-7 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103233.1| HIV-1 clone TL-6 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103232.1| HIV-1 clone TL-5 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103231.1| HIV-1 clone TL-4 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103230.1| HIV-1 clone TL-3 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103229.1| HIV-1 clone TL-2 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>gb|AY103227.1| HIV-1 clone TL-9 from Italy gag protein (gag) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 330 cagccagatcagccaaaatt 349
>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete sequence Length = 144757 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 caggcaggcttggaaggagg 38 |||||||||||||||||||| Sbjct: 119882 caggcaggcttggaaggagg 119863
>gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64 of 83 of the complete sequence Length = 271237 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aaaacttgtaaagttcaaaa 491 |||||||||||||||||||| Sbjct: 227683 aaaacttgtaaagttcaaaa 227702
>gb|AY786952.1| HIV-1 clone 1M-1005 from USA gag protein (gag) gene, complete cds Length = 1506 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 375 cagccagatcagccaaaatt 394
>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096, A12197, 12G8, A09100; complete sequence bases 1..217657 Length = 217657 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 caggcaggcttggaaggagg 38 |||||||||||||||||||| Sbjct: 33309 caggcaggcttggaaggagg 33290
>dbj|AB034901.1| Human immunodeficiency virus type 1 subtype B gene for gag polyprotein p17 region, isolate:HCM312 Length = 453 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 372 cagccagatcagccaaaatt 391
>dbj|AB044066.1| Human immunodeficiency virus type 1 gene for gag polyprotein, p17 region, isolate:HCM312 Length = 429 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cagccagatcagccaaaatt 214 |||||||||||||||||||| Sbjct: 372 cagccagatcagccaaaatt 391
>emb|AL670260.10| Mouse DNA sequence from clone RP23-1I17 on chromosome 4, complete sequence Length = 147052 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tctgtgtgtcaggcatcctc 135 |||||||||||||||||||| Sbjct: 7962 tctgtgtgtcaggcatcctc 7981 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,461,587 Number of Sequences: 3902068 Number of extensions: 5461587 Number of successful extensions: 104556 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104352 Number of HSP's gapped (non-prelim): 203 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
