ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23k11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106F16, full insert sequence Length = 1427 Score = 460 bits (232), Expect = e-126 Identities = 387/441 (87%) Strand = Plus / Plus Query: 20 tcatgcagagtttctttgatagnnnnnnnccgaaagtggacctcaagaaaaaatttaggg 79 ||||||||||||||| |||||| || |||||||| ||||||||||| | ||||| Sbjct: 564 tcatgcagagtttctctgatagaaaaaaaccaaaagtggatctcaagaaaaagtataggg 623 Query: 80 aacttagtcagtcacgtcctgtcaaggctgttcagggcagattttacacaccatctagca 139 |||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| | Sbjct: 624 aacttactcagtcacgtccagtcaaggctattcagggaagatttcaaacaccttctagta 683 Query: 140 aatttatttggaagacagcgattacttttgttttgcttggagtgcttacacttgttttcc 199 || | |||||| ||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct: 684 aagtgatttggcagacagcaataacttttgtattgcttggagtgcttacccttgttttcc 743 Query: 200 ctaccgaagaaggtccaactcttcaggtcttaatctcttgtgcggcaaatatctatttcc 259 |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 744 ctactgaagaagggccaactctccaggtggccatctcttgtgcagcaaatatctatttca 803 Query: 260 tttatcagcgacttaaaagtggatggaaatcattcttttacgggttcggctccttctttg 319 |||||||| | || |||||||||||| | |||||||||| |||||||| |||||||||| Sbjct: 804 tttatcagaggctgaaaagtggatggcgaacattcttttatgggttcggatccttctttg 863 Query: 320 cttcctggtttcttgccacattcttgatggtatcggtaattccgcctatactgcctggtc 379 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 864 cttcctggttccttgccacattcttgatggtttctgtaattccgcctatactgcctggtc 923 Query: 380 caaggaacttggaagtgagcactgcgtgtgttgcttacgcattcctttttgtatcatcaa 439 |||| |||||||||||||||||||| |||||| |||| ||| |||||||||||||||| Sbjct: 924 caagaaacttggaagtgagcactgcatgtgttacttatgcactcctttttgtatcatcgg 983 Query: 440 ccttcctgaagtaggaaatct 460 ||||||||||||||||||||| Sbjct: 984 ccttcctgaagtaggaaatct 1004
>dbj|AK058212.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C10, full insert sequence Length = 1351 Score = 460 bits (232), Expect = e-126 Identities = 387/441 (87%) Strand = Plus / Plus Query: 20 tcatgcagagtttctttgatagnnnnnnnccgaaagtggacctcaagaaaaaatttaggg 79 ||||||||||||||| |||||| || |||||||| ||||||||||| | ||||| Sbjct: 619 tcatgcagagtttctctgatagaaaaaaaccaaaagtggatctcaagaaaaagtataggg 678 Query: 80 aacttagtcagtcacgtcctgtcaaggctgttcagggcagattttacacaccatctagca 139 |||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| | Sbjct: 679 aacttactcagtcacgtccagtcaaggctattcagggaagatttcaaacaccttctagta 738 Query: 140 aatttatttggaagacagcgattacttttgttttgcttggagtgcttacacttgttttcc 199 || | |||||| ||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct: 739 aagtgatttggcagacagcaataacttttgtattgcttggagtgcttacccttgttttcc 798 Query: 200 ctaccgaagaaggtccaactcttcaggtcttaatctcttgtgcggcaaatatctatttcc 259 |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 799 ctactgaagaagggccaactctccaggtggccatctcttgtgcagcaaatatctatttca 858 Query: 260 tttatcagcgacttaaaagtggatggaaatcattcttttacgggttcggctccttctttg 319 |||||||| | || |||||||||||| | |||||||||| |||||||| |||||||||| Sbjct: 859 tttatcagaggctgaaaagtggatggcgaacattcttttatgggttcggatccttctttg 918 Query: 320 cttcctggtttcttgccacattcttgatggtatcggtaattccgcctatactgcctggtc 379 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 919 cttcctggttccttgccacattcttgatggtttctgtaattccgcctatactgcctggtc 978 Query: 380 caaggaacttggaagtgagcactgcgtgtgttgcttacgcattcctttttgtatcatcaa 439 |||| |||||||||||||||||||| |||||| |||| ||| |||||||||||||||| Sbjct: 979 caagaaacttggaagtgagcactgcatgtgttacttatgcactcctttttgtatcatcgg 1038 Query: 440 ccttcctgaagtaggaaatct 460 ||||||||||||||||||||| Sbjct: 1039 ccttcctgaagtaggaaatct 1059
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 238 bits (120), Expect = 2e-59 Identities = 242/285 (84%) Strand = Plus / Minus Query: 20 tcatgcagagtttctttgatagnnnnnnnccgaaagtggacctcaagaaaaaatttaggg 79 ||||||||||||||| |||||| || |||||||| ||||||||||| | ||||| Sbjct: 8181250 tcatgcagagtttctctgatagaaaaaaaccaaaagtggatctcaagaaaaagtataggg 8181191 Query: 80 aacttagtcagtcacgtcctgtcaaggctgttcagggcagattttacacaccatctagca 139 |||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| | Sbjct: 8181190 aacttactcagtcacgtccagtcaaggctattcagggaagatttcaaacaccttctagta 8181131 Query: 140 aatttatttggaagacagcgattacttttgttttgcttggagtgcttacacttgttttcc 199 || | |||||| ||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct: 8181130 aagtgatttggcagacagcaataacttttgtattgcttggagtgcttacccttgttttcc 8181071 Query: 200 ctaccgaagaaggtccaactcttcaggtcttaatctcttgtgcggcaaatatctatttcc 259 |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 8181070 ctactgaagaagggccaactctccaggtggccatctcttgtgcagcaaatatctatttca 8181011 Query: 260 tttatcagcgacttaaaagtggatggaaatcattcttttacgggt 304 |||||||| | || |||||||||||| | |||||||||| |||| Sbjct: 8181010 tttatcagaggctgaaaagtggatggcgaacattcttttatgggt 8180966 Score = 228 bits (115), Expect = 2e-56 Identities = 148/159 (93%) Strand = Plus / Minus Query: 302 ggttcggctccttctttgcttcctggtttcttgccacattcttgatggtatcggtaattc 361 ||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 8179099 ggttcggatccttctttgcttcctggttccttgccacattcttgatggtttctgtaattc 8179040 Query: 362 cgcctatactgcctggtccaaggaacttggaagtgagcactgcgtgtgttgcttacgcat 421 |||||||||||||||||||||| |||||||||||||||||||| |||||| |||| ||| Sbjct: 8179039 cgcctatactgcctggtccaagaaacttggaagtgagcactgcatgtgttacttatgcac 8178980 Query: 422 tcctttttgtatcatcaaccttcctgaagtaggaaatct 460 |||||||||||||||| ||||||||||||||||||||| Sbjct: 8178979 tcctttttgtatcatcggccttcctgaagtaggaaatct 8178941
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 238 bits (120), Expect = 2e-59 Identities = 242/285 (84%) Strand = Plus / Minus Query: 20 tcatgcagagtttctttgatagnnnnnnnccgaaagtggacctcaagaaaaaatttaggg 79 ||||||||||||||| |||||| || |||||||| ||||||||||| | ||||| Sbjct: 8179085 tcatgcagagtttctctgatagaaaaaaaccaaaagtggatctcaagaaaaagtataggg 8179026 Query: 80 aacttagtcagtcacgtcctgtcaaggctgttcagggcagattttacacaccatctagca 139 |||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| | Sbjct: 8179025 aacttactcagtcacgtccagtcaaggctattcagggaagatttcaaacaccttctagta 8178966 Query: 140 aatttatttggaagacagcgattacttttgttttgcttggagtgcttacacttgttttcc 199 || | |||||| ||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct: 8178965 aagtgatttggcagacagcaataacttttgtattgcttggagtgcttacccttgttttcc 8178906 Query: 200 ctaccgaagaaggtccaactcttcaggtcttaatctcttgtgcggcaaatatctatttcc 259 |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 8178905 ctactgaagaagggccaactctccaggtggccatctcttgtgcagcaaatatctatttca 8178846 Query: 260 tttatcagcgacttaaaagtggatggaaatcattcttttacgggt 304 |||||||| | || |||||||||||| | |||||||||| |||| Sbjct: 8178845 tttatcagaggctgaaaagtggatggcgaacattcttttatgggt 8178801 Score = 228 bits (115), Expect = 2e-56 Identities = 148/159 (93%) Strand = Plus / Minus Query: 302 ggttcggctccttctttgcttcctggtttcttgccacattcttgatggtatcggtaattc 361 ||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 8176934 ggttcggatccttctttgcttcctggttccttgccacattcttgatggtttctgtaattc 8176875 Query: 362 cgcctatactgcctggtccaaggaacttggaagtgagcactgcgtgtgttgcttacgcat 421 |||||||||||||||||||||| |||||||||||||||||||| |||||| |||| ||| Sbjct: 8176874 cgcctatactgcctggtccaagaaacttggaagtgagcactgcatgtgttacttatgcac 8176815 Query: 422 tcctttttgtatcatcaaccttcctgaagtaggaaatct 460 |||||||||||||||| ||||||||||||||||||||| Sbjct: 8176814 tcctttttgtatcatcggccttcctgaagtaggaaatct 8176776
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 238 bits (120), Expect = 2e-59 Identities = 242/285 (84%) Strand = Plus / Minus Query: 20 tcatgcagagtttctttgatagnnnnnnnccgaaagtggacctcaagaaaaaatttaggg 79 ||||||||||||||| |||||| || |||||||| ||||||||||| | ||||| Sbjct: 112680 tcatgcagagtttctctgatagaaaaaaaccaaaagtggatctcaagaaaaagtataggg 112621 Query: 80 aacttagtcagtcacgtcctgtcaaggctgttcagggcagattttacacaccatctagca 139 |||||| |||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| | Sbjct: 112620 aacttactcagtcacgtccagtcaaggctattcagggaagatttcaaacaccttctagta 112561 Query: 140 aatttatttggaagacagcgattacttttgttttgcttggagtgcttacacttgttttcc 199 || | |||||| ||||||| || |||||||| ||||||||||||||||| |||||||||| Sbjct: 112560 aagtgatttggcagacagcaataacttttgtattgcttggagtgcttacccttgttttcc 112501 Query: 200 ctaccgaagaaggtccaactcttcaggtcttaatctcttgtgcggcaaatatctatttcc 259 |||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 112500 ctactgaagaagggccaactctccaggtggccatctcttgtgcagcaaatatctatttca 112441 Query: 260 tttatcagcgacttaaaagtggatggaaatcattcttttacgggt 304 |||||||| | || |||||||||||| | |||||||||| |||| Sbjct: 112440 tttatcagaggctgaaaagtggatggcgaacattcttttatgggt 112396 Score = 228 bits (115), Expect = 2e-56 Identities = 148/159 (93%) Strand = Plus / Minus Query: 302 ggttcggctccttctttgcttcctggtttcttgccacattcttgatggtatcggtaattc 361 ||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 110529 ggttcggatccttctttgcttcctggttccttgccacattcttgatggtttctgtaattc 110470 Query: 362 cgcctatactgcctggtccaaggaacttggaagtgagcactgcgtgtgttgcttacgcat 421 |||||||||||||||||||||| |||||||||||||||||||| |||||| |||| ||| Sbjct: 110469 cgcctatactgcctggtccaagaaacttggaagtgagcactgcatgtgttacttatgcac 110410 Query: 422 tcctttttgtatcatcaaccttcctgaagtaggaaatct 460 |||||||||||||||| ||||||||||||||||||||| Sbjct: 110409 tcctttttgtatcatcggccttcctgaagtaggaaatct 110371
>emb|Z69731.1|SPAC6C3 S.pombe chromosome I cosmid c6C3 Length = 24643 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 591 tagttctttgctgagtttctat 612 |||||||||||||||||||||| Sbjct: 22018 tagttctttgctgagtttctat 22039
>ref|NM_001019154.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6C3.09), partial mRNA Length = 1008 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 591 tagttctttgctgagtttctat 612 |||||||||||||||||||||| Sbjct: 942 tagttctttgctgagtttctat 963
>emb|BX822760.1|CNS0A5XU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1371 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 561 tttttatttatttttcaggggt 582 |||||||||||||||||||||| Sbjct: 606 tttttatttatttttcaggggt 627
>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24 Length = 87487 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 561 tttttatttatttttcaggggt 582 |||||||||||||||||||||| Sbjct: 85625 tttttatttatttttcaggggt 85646
>gb|AF252279.1| Homo sapiens SCA8 gene, partial sequence; and Kelch-like 1 protein (KLHL1) gene, partial cds Length = 166350 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 tacttttgttttgcttggagt 182 ||||||||||||||||||||| Sbjct: 114249 tacttttgttttgcttggagt 114229
>gb|AC145855.2| Pan troglodytes BAC clone RP43-5O24 from 7, complete sequence Length = 178643 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tatctagtatatacatcaggt 630 ||||||||||||||||||||| Sbjct: 139409 tatctagtatatacatcaggt 139429
>emb|AL590554.7| Human DNA sequence from clone RP11-99O6 on chromosome 13, complete sequence Length = 97790 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 tacttttgttttgcttggagt 182 ||||||||||||||||||||| Sbjct: 74245 tacttttgttttgcttggagt 74265
>gb|AC009331.6| Homo sapiens chromosome 7 clone RP11-371N6, complete sequence Length = 158298 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 610 tatctagtatatacatcaggt 630 ||||||||||||||||||||| Sbjct: 38293 tatctagtatatacatcaggt 38273
>gb|AC011891.3|AC011891 Homo sapiens clone CTD-2320J21, complete sequence Length = 73481 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aggaaatctttggtttttcaa 472 ||||||||||||||||||||| Sbjct: 45677 aggaaatctttggtttttcaa 45697
>gb|AC156459.2| Mus musculus BAC clone RP23-269A9 from chromosome 13, complete sequence Length = 188142 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 592 agttctttgctgagtttctatctag 616 ||||||||||||||||||| ||||| Sbjct: 22620 agttctttgctgagtttctgtctag 22644
>gb|AC083871.2|AC083871 Homo sapiens chromosome 7 clone RP11-140I14, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tatctagtatatacatcaggt 630 ||||||||||||||||||||| Sbjct: 64578 tatctagtatatacatcaggt 64598
>gb|AC154219.1| Mus musculus BAC clone RP24-362C22 from 13, complete sequence Length = 175346 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 592 agttctttgctgagtttctatctag 616 ||||||||||||||||||| ||||| Sbjct: 57408 agttctttgctgagtttctgtctag 57384
>emb|Z32683.1|CER07E5 Caenorhabditis elegans Cosmid R07E5, complete sequence Length = 32266 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 tttttatttatttttcagggg 581 ||||||||||||||||||||| Sbjct: 804 tttttatttatttttcagggg 784 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,437,266 Number of Sequences: 3902068 Number of extensions: 9437266 Number of successful extensions: 281873 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 281697 Number of HSP's gapped (non-prelim): 166 length of query: 738 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 715 effective length of database: 17,143,297,704 effective search space: 12257457858360 effective search space used: 12257457858360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
