| Clone Name | bags23g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 168 bits (85), Expect = 2e-38 Identities = 140/157 (89%), Gaps = 1/157 (0%) Strand = Plus / Plus Query: 269 tactccctcggttcacaaatataagatgttctaacttttttgtgaagtagatgtatatag 328 ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 40275 tactccctccgttcacaaatataagatgttctaacttttttctgattcggatgtatatag 40334 Query: 329 acatgctttagtgtgtttgttcactcattccagtccgtatgtagtccatattgaaatatc 388 || ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 40335 acgcattttag-gtgtttgttcactcatttcagtctgtatgtagtccatattgaaatatc 40393 Query: 389 gaaaacatcctatattagtgaacggagggagtacata 425 |||||||| |||||| | |||||||||||||||||| Sbjct: 40394 caaaacatcttatatttgggaacggagggagtacata 40430 Score = 129 bits (65), Expect = 1e-26 Identities = 74/77 (96%) Strand = Plus / Plus Query: 615 gtgtttgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatctta 674 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 40346 gtgtttgttcactcatttcagtctgtatgtagtccatattgaaatatccaaaacatctta 40405 Query: 675 tatttgtgaacggaggg 691 |||||| |||||||||| Sbjct: 40406 tatttgggaacggaggg 40422 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 666 aacatcttatatttgtgaacggaggg 691 |||||||||||||||||||||||||| Sbjct: 40304 aacatcttatatttgtgaacggaggg 40279 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 392 aacatcctatattagtgaacggagggagtacat 424 |||||| |||||| ||||||||||||||||||| Sbjct: 40304 aacatcttatatttgtgaacggagggagtacat 40272 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 269 tactccctcggttcacaaatataagatgtt 298 ||||||||| |||| ||||||||||||||| Sbjct: 40426 tactccctccgttcccaaatataagatgtt 40397
>emb|X66013.1|TACATHBG T.aestivum gene for cathepsin B (Al16) Length = 4792 Score = 137 bits (69), Expect = 5e-29 Identities = 130/149 (87%), Gaps = 1/149 (0%) Strand = Plus / Plus Query: 274 cctcggttcacaaatataagatgttctaacttttttgtgaagtagatgtatatagacatg 333 |||| |||||| | |||||||||||||||||||||| | || | ||||||| |||||| | Sbjct: 2848 cctctgttcactattataagatgttctaacttttttctaaattggatgtatgtagacacg 2907 Query: 334 ctttagtgtgtttgttc-actcattccagtccgtatgtagtccatattgaaatatcgaaa 392 |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 2908 ttttagtgtgtttgttccactcatttcagtccgtatgtagtccatattgaaatatccaaa 2967 Query: 393 acatcctatattagtgaacggagggagta 421 | || |||| ||||| | |||||||||| Sbjct: 2968 atgtcgtataatagtggatggagggagta 2996 Score = 97.6 bits (49), Expect = 5e-17 Identities = 65/69 (94%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 600 tagacatgtttcagtgtgtttgttc-actcatgtcagtccgtatgtagtccatattgaaa 658 |||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct: 2900 tagacacgttttagtgtgtttgttccactcatttcagtccgtatgtagtccatattgaaa 2959 Query: 659 tatccaaaa 667 ||||||||| Sbjct: 2960 tatccaaaa 2968
>gb|AF490468.1| Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein (CO1) gene, complete cds Length = 4071 Score = 119 bits (60), Expect = 1e-23 Identities = 75/80 (93%) Strand = Plus / Minus Query: 612 agtgtgtttgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatc 671 |||||||||||||||| || ||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 110 agtgtgtttgttcacttatttcagtccgtatgtagtccacattaaaatatctaaaacatc 51 Query: 672 ttatatttgtgaacggaggg 691 |||||||||||||||||||| Sbjct: 50 ttatatttgtgaacggaggg 31 Score = 117 bits (59), Expect = 5e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 335 tttagtgtgtttgttcactcattccagtccgtatgtagtccatattgaaatatcgaaaac 394 ||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||| ||||| Sbjct: 113 tttagtgtgtttgttcacttatttcagtccgtatgtagtccacattaaaatatctaaaac 54 Query: 395 atcctatattagtgaacggagggagta 421 ||| |||||| |||||||||||||||| Sbjct: 53 atcttatatttgtgaacggagggagta 27 Score = 93.7 bits (47), Expect = 7e-16 Identities = 130/154 (84%), Gaps = 4/154 (2%) Strand = Plus / Minus Query: 269 tactccctcggttcacaaatataagatgttctaacttttttgtgaagtagatgtatatag 328 |||||| || |||||| | |||||||||||||||| |||| || | | ||||||||||| Sbjct: 3051 tactccttccgttcactattataagatgttctaaccttttcctg-attggatgtatatag 2993 Query: 329 -acatgctttagtgtgtttgttcactcattccagtccgtatgtagtccatattgaaatat 387 ||| |||||||||||||||| |||||| | |||| |||||||||||| ||||||||| Sbjct: 2992 cgcat--tttagtgtgtttgttcgctcatttcggtccttatgtagtccatcttgaaatat 2935 Query: 388 cgaaaacatcctatattagtgaacggagggagta 421 | ||||| || |||| ||||||| |||||||||| Sbjct: 2934 ccaaaacgtcttataatagtgaatggagggagta 2901 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 612 agtgtgtttgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatc 671 ||||||||||||| ||||| || |||| |||||||||||| |||||||||||||||| || Sbjct: 2984 agtgtgtttgttcgctcatttcggtccttatgtagtccatcttgaaatatccaaaacgtc 2925 Query: 672 ttatatttgtgaacggaggg 691 ||||| | ||||| |||||| Sbjct: 2924 ttataatagtgaatggaggg 2905 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 269 tactccctcggttcacaaatataagatgtt 298 ||||||||| |||||||||||||||||||| Sbjct: 27 tactccctccgttcacaaatataagatgtt 56 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 664 aaaacatcttatatttgtgaacggaggg 691 |||||||||||||| |||| |||||||| Sbjct: 147 aaaacatcttatatctgtggacggaggg 174
>dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox protein, complete cds Length = 9755 Score = 113 bits (57), Expect = 8e-22 Identities = 103/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 280 ttcacaaatataagatgttctaacttttttgtgaagtagatgtatatagacatgctttag 339 ||||| |||||||||||||||||||||| || || | ||||||||||| |||| ||||| Sbjct: 8576 ttcacgaatataagatgttctaacttttc-gttaattggatgtatataggcatgttttag 8634 Query: 340 tgtgtttgttcactcattccagtccgtatgtagtccatattgaaatatcgaaaacat 396 ||||||||||||| |||| ||||| ||||||||| |||||| ||||||| ||||||| Sbjct: 8635 tgtgtttgttcacccatttcagtctgtatgtagtgcatattaaaatatccaaaacat 8691 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 596 tatatagacatgtttcagtgtgtttgttcactcatgtcagtccgtatgtagtccatattg 655 ||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||| |||||| Sbjct: 8617 tatataggcatgttttagtgtgtttgttcacccatttcagtctgtatgtagtgcatatta 8676 Query: 656 aaatatccaaaacat 670 ||||||||||||||| Sbjct: 8677 aaatatccaaaacat 8691
>dbj|AB182945.1| Triticum aestivum Wknox1d gene for KN1 homeobox protein, complete cds Length = 9086 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 620 tgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatcttatattt 679 ||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct: 7991 tgttcactcatttcagtccgtatgtagtccatactaaaatatccaaaacatattatattt 8050 Query: 680 gtgaacggagg 690 ||||| ||||| Sbjct: 8051 gtgaatggagg 8061 Score = 97.6 bits (49), Expect = 5e-17 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 273 ccctcggttcacaaatataagatgttctaacttttttgtgaagtagatgtatatagacat 332 ||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 7888 ccctccgttcgcaaatataagatgttctaacttttc-gtgaatcagatgtatatagacac 7946 Query: 333 gctttagtgtgtttgttcactcattccagtccgtatgtagtccat 377 || |||||||||||||||||||| |||| ||||||||||||| Sbjct: 7947 atttgagtgtgtttgttcactcatttcagtttgtatgtagtccat 7991 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 346 tgttcactcattccagtccgtatgtagtccatattgaaatatcgaaaacatcctatatta 405 |||||||||||| |||||||||||||||||||| | ||||||| ||||||| |||||| Sbjct: 7991 tgttcactcatttcagtccgtatgtagtccatactaaaatatccaaaacatattatattt 8050 Query: 406 gtgaacggagggagta 421 ||||| ||||| |||| Sbjct: 8051 gtgaatggaggtagta 8066 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 596 tatatagacatgtttcagtgtgtttgttcactcatgtcagtccgtatgtagtccat 651 |||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct: 7936 tatatagacacatttgagtgtgtttgttcactcatttcagtttgtatgtagtccat 7991 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 666 aacatcttatatttgtgaacggaggg 691 ||||||||||||||| |||||||||| Sbjct: 7913 aacatcttatatttgcgaacggaggg 7888
>gb|AF490467.1| Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein (CO1) gene, complete cds Length = 2252 Score = 93.7 bits (47), Expect = 7e-16 Identities = 130/154 (84%), Gaps = 4/154 (2%) Strand = Plus / Minus Query: 269 tactccctcggttcacaaatataagatgttctaacttttttgtgaagtagatgtatatag 328 |||||| || |||||| | |||||||||||||||| |||| || | | ||||||||||| Sbjct: 1656 tactccttccgttcactattataagatgttctaaccttttcctg-attggatgtatatag 1598 Query: 329 -acatgctttagtgtgtttgttcactcattccagtccgtatgtagtccatattgaaatat 387 ||| |||||||||||||||| |||||| | |||| |||||||||||| ||||||||| Sbjct: 1597 cgcat--tttagtgtgtttgttcgctcatttcggtccttatgtagtccatcttgaaatat 1540 Query: 388 cgaaaacatcctatattagtgaacggagggagta 421 | ||||| || |||| ||||||| |||||||||| Sbjct: 1539 ccaaaacgtcttataatagtgaatggagggagta 1506 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 612 agtgtgtttgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatc 671 ||||||||||||| ||||| || |||| |||||||||||| |||||||||||||||| || Sbjct: 1589 agtgtgtttgttcgctcatttcggtccttatgtagtccatcttgaaatatccaaaacgtc 1530 Query: 672 ttatatttgtgaacggaggg 691 ||||| | ||||| |||||| Sbjct: 1529 ttataatagtgaatggaggg 1510
>gb|DQ257593.1| Hordeum vulgare subsp. vulgare clone 29-26A-LB flanking T-DNA insertion sequence Length = 623 Score = 81.8 bits (41), Expect = 3e-12 Identities = 94/110 (85%), Gaps = 5/110 (4%) Strand = Plus / Minus Query: 317 agatgtatatagacatgctttagtgtgtttgttcactcattccagtccgtatgta----g 372 ||||||||||||||| | ||||||| |||||||||||| || ||||||||||| | Sbjct: 351 agatgtatatagacacgttttagtgcgtttgttcactcgtt-tggtccgtatgtaggtgg 293 Query: 373 tccatattgaaatatcgaaaacatcctatattagtgaacggagggagtac 422 ||||||||||||| ||||||||||| |||||| | ||||||| ||||||| Sbjct: 292 tccatattgaaatgtcgaaaacatcttatatttgcgaacggatggagtac 243 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/97 (85%), Gaps = 5/97 (5%) Strand = Plus / Minus Query: 596 tatatagacatgtttcagtgtgtttgttcactcatgtcagtccgtatgta----gtccat 651 |||||||||| |||| |||| |||||||||||| | | ||||||||||| |||||| Sbjct: 346 tatatagacacgttttagtgcgtttgttcactcgt-ttggtccgtatgtaggtggtccat 288 Query: 652 attgaaatatccaaaacatcttatatttgtgaacgga 688 |||||||| || ||||||||||||||||| ||||||| Sbjct: 287 attgaaatgtcgaaaacatcttatatttgcgaacgga 251
>gb|DQ175915.1| Hordeum vulgare subsp. vulgare clone 29-26A-LB flanking T-DNA insertion sequence Length = 664 Score = 81.8 bits (41), Expect = 3e-12 Identities = 94/110 (85%), Gaps = 5/110 (4%) Strand = Plus / Plus Query: 317 agatgtatatagacatgctttagtgtgtttgttcactcattccagtccgtatgta----g 372 ||||||||||||||| | ||||||| |||||||||||| || ||||||||||| | Sbjct: 273 agatgtatatagacacgttttagtgcgtttgttcactcgtt-tggtccgtatgtaggtgg 331 Query: 373 tccatattgaaatatcgaaaacatcctatattagtgaacggagggagtac 422 ||||||||||||| ||||||||||| |||||| | ||||||| ||||||| Sbjct: 332 tccatattgaaatgtcgaaaacatcttatatttgcgaacggatggagtac 381 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/97 (85%), Gaps = 5/97 (5%) Strand = Plus / Plus Query: 596 tatatagacatgtttcagtgtgtttgttcactcatgtcagtccgtatgta----gtccat 651 |||||||||| |||| |||| |||||||||||| | | ||||||||||| |||||| Sbjct: 278 tatatagacacgttttagtgcgtttgttcactcgt-ttggtccgtatgtaggtggtccat 336 Query: 652 attgaaatatccaaaacatcttatatttgtgaacgga 688 |||||||| || ||||||||||||||||| ||||||| Sbjct: 337 attgaaatgtcgaaaacatcttatatttgcgaacgga 373
>emb|AJ841698.1| Poa pratensis serk1 gene for somatic embryogenesis receptor-like kinase 1, exons 1-11, allele 1 Length = 5188 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 600 tagacatgtttcagtgtgtttgttcactcatgtcagtccgtatgtagtccatattgaaat 659 ||||| ||||||||||||| |||||||| | ||||||| ||||||||| | |||||||| Sbjct: 615 tagacgtgtttcagtgtgtaggttcactcttttcagtccatatgtagtctacattgaaat 674 Query: 660 atccaaaacatcttatatttgtgaacggaggg 691 || ||||||||| ||| || |||||||||| Sbjct: 675 attgaaaacatctcataatttggaacggaggg 706 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 319 atgtatatagacatgctttagtgtgtttgttcactcattccagtccgtatgtagtccata 378 |||||| ||||| || || ||||||| |||||||| || |||||| ||||||||| | | Sbjct: 608 atgtatctagacgtgtttcagtgtgtaggttcactcttttcagtccatatgtagtctaca 667 Query: 379 ttgaaatatcgaaaacatcctatattagtgaacggagggagta 421 ||||||||| ||||||||| ||| | |||||||||||||| Sbjct: 668 ttgaaatattgaaaacatctcataatttggaacggagggagta 710
>emb|AJ841697.1| Poa pratensis serk2 gene for somatic embryogenesis receptor-like kinase 2, exons 1-11, allele 1 Length = 5290 Score = 63.9 bits (32), Expect = 7e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 335 tttagtgtgtttgttcactcattccagtccgtatgtagtccatattgaaatatcgaaaac 394 |||||||||| |||||||| || |||| ||||||||||| | |||||||||||||||| Sbjct: 653 tttagtgtgtaggttcactcttttcagtgcgtatgtagtctacattgaaatatcgaaaat 712 Query: 395 atcctata 402 ||| |||| Sbjct: 713 atcttata 720 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 612 agtgtgtttgttcactcatgtcagtccgtatgtagtccatattgaaatatccaaaacatc 671 ||||||| |||||||| | ||||| ||||||||||| | ||||||||||| |||| ||| Sbjct: 656 agtgtgtaggttcactcttttcagtgcgtatgtagtctacattgaaatatcgaaaatatc 715 Query: 672 ttata 676 ||||| Sbjct: 716 ttata 720
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 500 ggttgggtagttaagaagaaaaggcaaaagctt 532 |||||||| |||||||||||||||||||||||| Sbjct: 14736624 ggttgggtggttaagaagaaaaggcaaaagctt 14736656
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 500 ggttgggtagttaagaagaaaaggcaaaagctt 532 |||||||| |||||||||||||||||||||||| Sbjct: 22013 ggttgggtggttaagaagaaaaggcaaaagctt 22045
>gb|AY821693.1| Australopyrum velutinum beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1595 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 636 tccgtatgtagtccatattgaaatatccaaaacatcttatatttgtgaacggaggg 691 ||||||||||||||||||| |||| || |||| ||||||||| |||||||||| Sbjct: 1275 tccgtatgtagtccatattcaaatctctaaaaagacttatatttaggaacggaggg 1220 Score = 40.1 bits (20), Expect = 9.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 362 tccgtatgtagtccatattgaaatatcgaaaacatcctatattagtgaacggagggagta 421 ||||||||||||||||||| |||| || |||| | |||||| |||||||||||||| Sbjct: 1275 tccgtatgtagtccatattcaaatctctaaaaagacttatatttaggaacggagggagta 1216
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtac 422 |||||||||||||||||||||||| Sbjct: 24237610 tatattagtgaacggagggagtac 24237633 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 gaacggagggagtacataggagca 431 |||||||||||||||| ||||||| Sbjct: 12028861 gaacggagggagtacacaggagca 12028838
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||||||||||||||||||| Sbjct: 143014 tatattagtgaacggagggagtac 142991
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtac 422 |||||||||||||||||||||||| Sbjct: 24155079 tatattagtgaacggagggagtac 24155102 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 gaacggagggagtacataggagca 431 |||||||||||||||| ||||||| Sbjct: 12025624 gaacggagggagtacacaggagca 12025601
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 46.1 bits (23), Expect = 0.15 Identities = 59/71 (83%) Strand = Plus / Minus Query: 317 agatgtatatagacatgctttagtgtgtttgttcactcattccagtccgtatgtagtcca 376 |||||||||||||||| ||||| |||| |||||||||| |||||||||||| || Sbjct: 173023 agatgtatatagacataatttagagtgtagattcactcattttgttccgtatgtagttca 172964 Query: 377 tattgaaatat 387 |||| |||||| Sbjct: 172963 tattaaaatat 172953 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 335 tttagtgtgtttgttcactcatt 357 ||||||||||||||||||||||| Sbjct: 36288 tttagtgtgtttgttcactcatt 36266
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtacata 425 |||||||||| |||||||||||||||| Sbjct: 6604185 tatattagtggacggagggagtacata 6604159
>dbj|AK072811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143E03, full insert sequence Length = 1888 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtacata 425 |||||||||| |||||||||||||||| Sbjct: 1145 tatattagtggacggagggagtacata 1171
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0031C24 Length = 194111 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtacata 425 |||||||||| |||||||||||||||| Sbjct: 116279 tatattagtggacggagggagtacata 116253
>gb|AC004979.1| Homo sapiens PAC clone RP5-1154E9 from 7, complete sequence Length = 82419 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 caaatttactgaagcaaagtta 254 |||||||||||||||||||||| Sbjct: 53855 caaatttactgaagcaaagtta 53834
>gb|AC022360.23| Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171991 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 tgcaaatatatctttaagacgt 160 |||||||||||||||||||||| Sbjct: 99179 tgcaaatatatctttaagacgt 99158
>gb|AF122050.1|AF122050 Hordeum vulgare limit dextrinase gene, complete cds Length = 11462 Score = 44.1 bits (22), Expect = 0.61 Identities = 52/62 (83%) Strand = Plus / Plus Query: 362 tccgtatgtagtccatattgaaatatcgaaaacatcctatattagtgaacggagggagta 421 ||||||||||||||||| || ||| ||||||| | |||||| |||||||||||||| Sbjct: 3601 tccgtatgtagtccatagtggaatgtcgaaaaagacttatatttaggaacggagggagta 3660 Query: 422 ca 423 || Sbjct: 3661 ca 3662 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 636 tccgtatgtagtccatattgaaatatccaaaacatcttatatttgtgaacggaggg 691 ||||||||||||||||| || ||| || |||| ||||||||| |||||||||| Sbjct: 3601 tccgtatgtagtccatagtggaatgtcgaaaaagacttatatttaggaacggaggg 3656
>ref|NM_101012.3| Arabidopsis thaliana unknown protein AT1G11390 mRNA, complete cds Length = 2371 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 603 acatgtttcagtgtgtttgttcact 627 |||||||||||||| |||||||||| Sbjct: 2342 acatgtttcagtgtttttgttcact 2318
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 42.1 bits (21), Expect = 2.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 640 tatgtagtccatattgaaatatccaaaacatcttatatttgtgaacgga 688 |||||||||||||||||||| || |||| ||||||||| ||||||| Sbjct: 260213 tatgtagtccatattgaaatctctaaaaagacttatatttaggaacgga 260165 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 636 tccgtatgtagtccatattgaaatatccaaaa 667 ||||||||||||| ||||| ||||||| |||| Sbjct: 336123 tccgtatgtagtctatattaaaatatctaaaa 336092 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 362 tccgtatgtagtccatattgaaatatcgaaaa 393 ||||||||||||| ||||| ||||||| |||| Sbjct: 336123 tccgtatgtagtctatattaaaatatctaaaa 336092 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tatgtagtccatattgaaat 385 |||||||||||||||||||| Sbjct: 260213 tatgtagtccatattgaaat 260194
>gb|AC157549.4| Mus musculus chromosome 8, clone RP24-374O12, complete sequence Length = 132933 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 acatgtttcagtgtgtttgtt 623 ||||||||||||||||||||| Sbjct: 123912 acatgtttcagtgtgtttgtt 123892
>emb|CR376856.9| Zebrafish DNA sequence from clone CH211-11O22 in linkage group 9, complete sequence Length = 179053 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 agtgtgtttgttcactcatgt 632 ||||||||||||||||||||| Sbjct: 164391 agtgtgtttgttcactcatgt 164371
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 318 gatgtatatagacatgctttagtgtgtttgttcactcattccagtccgtatgtagtc 374 ||||||||||||||| |||||| |||| |||||||||| ||||||||||||| Sbjct: 251 gatgtatatagacatactttagagtgtagattcactcattttgctccgtatgtagtc 195
>ref|XM_686049.1| PREDICTED: Danio rerio similar to ubiquitin-activating enzyme E1-domain containing 1 isoform 1 (LOC562674), mRNA Length = 1067 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 ggaaatgatatctctaacact 486 ||||||||||||||||||||| Sbjct: 927 ggaaatgatatctctaacact 947
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 aactactccctcggttcacaaatataagatgtt 298 |||||||||||||||| | ||||||||| |||| Sbjct: 6223122 aactactccctcggttaaaaaatataaggtgtt 6223154 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtacatag 426 |||||||| | ||||||||||||||||| Sbjct: 22751363 tatattaggggacggagggagtacatag 22751390 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtac 422 |||||||| ||||||||||||||| Sbjct: 11404804 tatattagggaacggagggagtac 11404827
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 266 aactactccctcggttcacaaatataaga 294 |||||||||||| || ||||||||||||| Sbjct: 37622386 aactactccctctgtccacaaatataaga 37622358 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 acggagggagtacataggag 429 |||||||||||||||||||| Sbjct: 22547727 acggagggagtacataggag 22547708
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence Length = 84797 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 603 acatgtttcagtgtgtttgttcact 627 |||||||||||||| |||||||||| Sbjct: 19072 acatgtttcagtgtttttgttcact 19096
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 317 agatgtatatagacatgctttagtgtgtttgttcactcatt 357 |||||||||||||||| ||||| ||||| |||||||||| Sbjct: 47385 agatgtatatagacatactttaaagtgttgattcactcatt 47345
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 266 aactactccctcggttcacaaatataaga 294 |||||||||||| || ||||||||||||| Sbjct: 82860 aactactccctctgtccacaaatataaga 82832
>emb|BX005146.4| Zebrafish DNA sequence from clone CH211-152N19 in linkage group 3, complete sequence Length = 180858 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 agtgtgtttgttcactcatgt 632 ||||||||||||||||||||| Sbjct: 174039 agtgtgtttgttcactcatgt 174019
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 aactactccctcggttcacaaatataagatgtt 298 |||||||||||||||| | ||||||||| |||| Sbjct: 9259 aactactccctcggttaaaaaatataaggtgtt 9291
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 aactactccctcggttcacaaatataagatgtt 298 |||||||||||||||| | ||||||||| |||| Sbjct: 86515 aactactccctcggttaaaaaatataaggtgtt 86547
>gb|AC166241.7| Mus musculus chromosome 8, clone RP23-125A7, complete sequence Length = 208067 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 603 acatgtttcagtgtgtttgtt 623 ||||||||||||||||||||| Sbjct: 184466 acatgtttcagtgtgtttgtt 184486
>dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-692N5, complete sequences Length = 186626 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 639 gtatgtagtccatattgaaatatcc 663 ||||||||| ||||||||||||||| Sbjct: 3984 gtatgtagtacatattgaaatatcc 3960 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 gtatgtagtccatattgaaatatc 388 ||||||||| |||||||||||||| Sbjct: 3984 gtatgtagtacatattgaaatatc 3961
>gb|AY821692.1| Australopyrum retrofractum beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1602 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 636 tccgtatgtagtccatattgaaatatccaaaacatcttatatttgtgaacggaggg 691 |||||||||||| |||||| |||| || |||| ||||||||| |||||||||| Sbjct: 1281 tccgtatgtagtgcatattcaaatctctaaaaagacttatatttaggaacggaggg 1226
>gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence Length = 181893 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 tcttctgtggttgggtagtt 511 |||||||||||||||||||| Sbjct: 153522 tcttctgtggttgggtagtt 153503
>ref|XM_630041.1| Dictyostelium discoideum hypothetical protein (DDB0183812), partial mRNA Length = 3198 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 tctttaagacgtatctagtttctttgtt 176 |||||||||| ||||| ||||||||||| Sbjct: 2723 tctttaagacttatctcgtttctttgtt 2750
>gb|AC165307.6| Mus musculus chromosome 3, clone RP24-372I24, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acactgctactttgtgtgat 45 |||||||||||||||||||| Sbjct: 121818 acactgctactttgtgtgat 121799
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 40.1 bits (20), Expect = 9.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 318 gatgtatatagacatgctttagtgtgtttgttcactcatt 357 ||||||||||||||| |||||| |||| |||||||||| Sbjct: 93833 gatgtatatagacatactttagagtgtagattcactcatt 93794
>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1036 gene, complete cds Length = 29663 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 atgtatatagacatgcttta 338 |||||||||||||||||||| Sbjct: 17184 atgtatatagacatgcttta 17165
>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3, complete sequence Length = 171119 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 acatgtttcagtgtgtttgt 622 |||||||||||||||||||| Sbjct: 136345 acatgtttcagtgtgtttgt 136326
>gb|AC098705.2| Mus musculus BAC clone RP23-1B19 from 3, complete sequence Length = 202444 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acactgctactttgtgtgat 45 |||||||||||||||||||| Sbjct: 58537 acactgctactttgtgtgat 58518
>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence Length = 129921 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 397 cctatattagtgaacggagggagtacat 424 |||||| |||||| |||||||||||||| Sbjct: 95862 cctataatagtgaccggagggagtacat 95835
>emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 in linkage group 13, complete sequence Length = 206656 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 aaaaggcaaaagcttctcttgtct 541 |||||||||||| ||||||||||| Sbjct: 95317 aaaaggcaaaagtttctcttgtct 95340
>emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on chromosome 1 Contains a novel gene, the gene for tetraspan 1 (TSPAN-1), gene FLJ20277 (FLJ31624) and the gene for a novel protein (FLJ25163), complete sequence Length = 87234 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tcaagcaaatttactgaagc 247 |||||||||||||||||||| Sbjct: 3939 tcaagcaaatttactgaagc 3958
>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete sequence Length = 113362 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 atatatagacatgtttcagt 614 |||||||||||||||||||| Sbjct: 80150 atatatagacatgtttcagt 80169
>emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chromosome 1 Contains the CELSR2 gene for cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila), the gene for differential display and activated by p53 (DDA3), the gene for novel protein similar to Myosin-binding protein H (MyBP-H) (H-protein) (LOC343263), the SORT1 gene for sortilin 1 and the 3' end of the PSMA5 gene for proteasome (prosome, macropain) subunit, alpha type, 5, complete sequence Length = 169241 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ttactgaagcaaagttacac 257 |||||||||||||||||||| Sbjct: 118692 ttactgaagcaaagttacac 118711
>emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on chromosome 1, complete sequence Length = 191686 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ttttgtgaagtagatgtata 325 |||||||||||||||||||| Sbjct: 74727 ttttgtgaagtagatgtata 74746
>emb|AL357623.14| Human DNA sequence from clone RP11-342E24 on chromosome 9 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351), complete sequence Length = 39420 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ctctaacactcaggctcttc 496 |||||||||||||||||||| Sbjct: 25796 ctctaacactcaggctcttc 25777
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence Length = 112404 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 398 ctatattagtgaacggagggagtacataggag 429 |||||||| ||||||||||||||||| |||| Sbjct: 6385 ctatattatggaacggagggagtacatgggag 6354
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 398 ctatattagtgaacggagggagtacataggag 429 |||||||| ||||||||||||||||| |||| Sbjct: 99144 ctatattatggaacggagggagtacatgggag 99113
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||||| ||||||||||||| Sbjct: 13249 tatattagtggacggagggagtac 13226
>emb|AJ639871.1| Macrotis lagotis mitochondrion (partial) Length = 15289 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 attaatttaatatttgagct 63 |||||||||||||||||||| Sbjct: 1570 attaatttaatatttgagct 1551
>gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chromosome 1, complete sequence Length = 198127 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ttactgaagcaaagttacac 257 |||||||||||||||||||| Sbjct: 63269 ttactgaagcaaagttacac 63288
>gb|U55370.1| Caenorhabditis elegans cosmid K03B4, complete sequence Length = 32403 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 tgttctaacttttttgtgaagtag 318 |||| ||||||||||||||||||| Sbjct: 23551 tgttataacttttttgtgaagtag 23574
>tpg|BK003727.1| TPA: TPA_inf: Drosophila melanogaster HDC05820 (HDC05820) gene, complete cds Length = 4162 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 atattgaaatatccaaaaca 669 |||||||||||||||||||| Sbjct: 1772 atattgaaatatccaaaaca 1753
>gb|AC067981.6| Homo sapiens chromosome 18, clone RP11-805E19, complete sequence Length = 158750 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tttttgtgaagtagatgtat 324 |||||||||||||||||||| Sbjct: 46524 tttttgtgaagtagatgtat 46543
>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence Length = 167694 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tttttgtgaagtagatgtat 324 |||||||||||||||||||| Sbjct: 46694 tttttgtgaagtagatgtat 46675
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 636 tccgtatgtagtccatattgaaatatccaaaacatcttatatttgtgaacggaggg 691 ||||||||||||| ||| |||||| | |||| |||||||||| |||||||||| Sbjct: 66708 tccgtatgtagtctatagtgaaatttgtaaaaggtcttatatttaggaacggaggg 66763
>gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, complete sequence Length = 175919 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tttgtatctacaactaaaat 218 |||||||||||||||||||| Sbjct: 136892 tttgtatctacaactaaaat 136911
>gb|AF022725.1|AF022725 Hordeum vulgare limit dextrinase (HvLD99) gene, complete cds Length = 12034 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 362 tccgtatgtagtccatattgaaatatcgaaaa 393 ||||||||||||||||| || ||| ||||||| Sbjct: 3661 tccgtatgtagtccatagtggaatgtcgaaaa 3692
>ref|NM_071861.3| Caenorhabditis elegans K03B4.2 (K03B4.2) mRNA, complete cds Length = 827 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 tgttctaacttttttgtgaagtag 318 |||| ||||||||||||||||||| Sbjct: 547 tgttataacttttttgtgaagtag 570
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||||| ||||||||||||| Sbjct: 23570568 tatattagtggacggagggagtac 23570545 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 398 ctatattagtgaacggagggagtacataggag 429 |||||||| ||||||||||||||||| |||| Sbjct: 20036481 ctatattatggaacggagggagtacatgggag 20036450
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||| ||||||||||||||| Sbjct: 5000824 tatattagggaacggagggagtac 5000801
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 gaacggagggagtacataggagca 431 |||||||||||||||| ||||||| Sbjct: 49441 gaacggagggagtacacaggagca 49418
>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone BACR38D12, complete sequence Length = 171831 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 atattgaaatatccaaaaca 669 |||||||||||||||||||| Sbjct: 32801 atattgaaatatccaaaaca 32782
>gb|AC074117.7| Homo sapiens BAC clone RP11-413M20 from 2, complete sequence Length = 195880 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 tgggtagttaagaagaaaag 522 |||||||||||||||||||| Sbjct: 59723 tgggtagttaagaagaaaag 59742
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 40.1 bits (20), Expect = 9.5 Identities = 50/60 (83%) Strand = Plus / Minus Query: 362 tccgtatgtagtccatattgaaatatcgaaaacatcctatattagtgaacggagggagta 421 |||||||||||||| || |||||| || |||| | ||||||| |||||||||||||| Sbjct: 6258 tccgtatgtagtccttagtgaaatctctaaaatgacttatattatggaacggagggagta 6199
>dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0475A09 Length = 143417 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtac 422 |||||||| ||||||||||||||| Sbjct: 142409 tatattagggaacggagggagtac 142432
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 390 aaaacatcctatattagtgaacggagggagta 421 |||||||||||||||| | |||||||||||| Sbjct: 33471 aaaacatcctatattatgggacggagggagta 33440
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 acggagggagtacataggag 429 |||||||||||||||||||| Sbjct: 63464 acggagggagtacataggag 63445
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||| ||||||||||||||| Sbjct: 42938 tatattagggaacggagggagtac 42915
>emb|BX004837.9| Zebrafish DNA sequence from clone CH211-134F7 in linkage group 19, complete sequence Length = 188325 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tcaagcaaatttactgaagc 247 |||||||||||||||||||| Sbjct: 19777 tcaagcaaatttactgaagc 19796
>emb|BX511200.2|RN52A6 Rattus norvegicus chromosome 1 BAC RP32-52A6, complete sequence Length = 150951 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tttcccccataaaataccat 125 |||||||||||||||||||| Sbjct: 18366 tttcccccataaaataccat 18385
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1116H04 Length = 140142 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtacatag 426 |||||||| | ||||||||||||||||| Sbjct: 78005 tatattaggggacggagggagtacatag 78032
>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1111C03 Length = 144879 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtacatag 426 |||||||| | ||||||||||||||||| Sbjct: 120157 tatattaggggacggagggagtacatag 120184
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 tatattagtgaacggagggagtac 422 |||||||| ||||||||||||||| Sbjct: 18793 tatattagggaacggagggagtac 18816
>gb|AC121247.2| Homo sapiens chromosome 3 clone RP11-3B7, complete sequence Length = 170787 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaatataagatgttctaact 304 |||||||||||||||||||| Sbjct: 136406 aaatataagatgttctaact 136425
>emb|CR382336.11| Zebrafish DNA sequence from clone CH211-125A6 in linkage group 19, complete sequence Length = 175656 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tcaagcaaatttactgaagc 247 |||||||||||||||||||| Sbjct: 171806 tcaagcaaatttactgaagc 171787
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete sequence Length = 261690 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 atattgaaatatccaaaaca 669 |||||||||||||||||||| Sbjct: 110974 atattgaaatatccaaaaca 110955
>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16, complete sequence Length = 199783 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tactttgtgtgattaattta 52 |||||||||||||||||||| Sbjct: 178145 tactttgtgtgattaattta 178164
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tatattagtgaacggagggagtac 422 |||||||||| ||||||||||||| Sbjct: 126471 tatattagtggacggagggagtac 126448
>gb|U87149.1|HVU87149 Hordeum vulgare nucellin gene, complete cds Length = 3686 Score = 40.1 bits (20), Expect = 9.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 318 gatgtatatagacatgctttagtgtgtttgttcactcatt 357 ||||||||||||||| |||||| |||| |||||||||| Sbjct: 2076 gatgtatatagacatactttagagtgtagattcactcatt 2115
>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete sequence Length = 176808 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 atatatagacatgtttcagt 614 |||||||||||||||||||| Sbjct: 138263 atatatagacatgtttcagt 138282
>dbj|AB028931.1| Adiantum capillus-veneris CRY5 gene for blue light photoreceptor, complete cds Length = 3954 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 cgtatctagtttctttgttaaggt 181 |||||||||||||||||| ||||| Sbjct: 2304 cgtatctagtttctttgtgaaggt 2327
>dbj|AB028929.1| Adiantum capillus-veneris CRY5 mRNA for blue light photoreceptor, complete cds Length = 2828 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 cgtatctagtttctttgttaaggt 181 |||||||||||||||||| ||||| Sbjct: 1423 cgtatctagtttctttgtgaaggt 1446
>dbj|AP005262.3| Homo sapiens genomic DNA, chromosome 18 clone:CTD-2533G20, complete sequence Length = 113000 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 atagacatgctttagtgtgt 344 |||||||||||||||||||| Sbjct: 98133 atagacatgctttagtgtgt 98152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,306,197 Number of Sequences: 3902068 Number of extensions: 7306197 Number of successful extensions: 162345 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 160601 Number of HSP's gapped (non-prelim): 1737 length of query: 691 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 668 effective length of database: 17,143,297,704 effective search space: 11451722866272 effective search space used: 11451722866272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)