ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23g09 |
|---|---|
| Clone Library Name | barley_pub |
>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1| (Translocase of outer membrane 40 kDa subunit homolog 1) Length = 308 Score = 226 bits (575), Expect = 6e-59 Identities = 112/173 (64%), Positives = 135/173 (78%), Gaps = 5/173 (2%) Frame = +3 Query: 138 AGILPPKS----DGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKML 305 A +LPP + D K +EKVDY NLP PVPYEE+ REALMSLK + FEGLRFDFT+ L Sbjct: 1 ADLLPPLTAAQVDAKTKVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDFTRAL 60 Query: 306 TQKFALSHSVLMGSLEVPSQSADV-IKVPTSQYEFGANFLDPKLMLIGRLMTDGRLNARV 482 QKF+LSHSV+MG EVP+QS + IK+PT+ YEFGAN+ DPKL+LIGR+MTDGRLNAR+ Sbjct: 61 NQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRLNARL 120 Query: 483 KCDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGANYI 641 K DLT+ L +K NA +T+E H SQ MFNFDY G+DYRAQ Q+G +A GA YI Sbjct: 121 KADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYI 173
>TO402_ARATH (Q9SX55) Putative mitochondrial import receptor subunit TOM40| homolog 2 (Translocase of outer membrane 40 kDa subunit homolog 2) Length = 310 Score = 211 bits (537), Expect = 1e-54 Identities = 105/175 (60%), Positives = 127/175 (72%), Gaps = 6/175 (3%) Frame = +3 Query: 135 LAGILPP----KSDGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKM 302 + G PP + D K +EKVDY NLPCPV YEE+ REA M+LKPELFEG R D+ K Sbjct: 1 MEGFSPPINTAQVDAKTKLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDYNKS 60 Query: 303 LTQKFALSHSVLMGSLEVPSQ--SADVIKVPTSQYEFGANFLDPKLMLIGRLMTDGRLNA 476 L QKF LSHS+LMG EVP+ S+++IK+PT+ Y+FGA F+DPKL LIGR+ TDGRLNA Sbjct: 61 LNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGRLNA 120 Query: 477 RVKCDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGANYI 641 R K DLT+N ++K NA LT E SQG DYKG+DYR Q Q+GNN+ Y ANYI Sbjct: 121 RAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQLQLGNNSVYAANYI 175
>TOM40_XENTR (Q6P825) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 58.9 bits (141), Expect = 1e-08 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 8/168 (4%) Frame = +3 Query: 135 LAGILPPKSDGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQK 314 +AG+ P DKKE + D LP P +EE R+ L P EG++ K L+ Sbjct: 35 VAGLTPTP----DKKETQED--RLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNY 87 Query: 315 FALSHSVLMGSLEVPSQSADVIKVPTSQYEFGANFLDPKLM--------LIGRLMTDGRL 470 F ++H+V + + S Y FGA ++ K + L+G L G L Sbjct: 88 FQVNHTVSLSM------------IGESNYHFGATYVGTKQLGPAEAFPVLVGDLDNSGSL 135 Query: 471 NARVKCDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGN 614 NA++ +T N+ KI Q T + + + +Y+G D+ A +GN Sbjct: 136 NAQIIHQVTSNVRSKIALQ-TQQSKFVNWQLDTEYRGEDFTAAVTLGN 182
>TOM40_XENLA (Q7ZTM6) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 56.2 bits (134), Expect = 8e-08 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Frame = +3 Query: 135 LAGILPPKSDGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQK 314 +AG+ P DKKE + + LP P +EE R+ L P EG++ K L+ Sbjct: 35 VAGLTPTP----DKKEPQEE--RLPNPGTFEECHRKC-KELFPIQMEGVKLIVNKGLSNY 87 Query: 315 FALSHSVLMGSLEVPSQSADVIKVPTSQYEFGANFLDPKLM--------LIGRLMTDGRL 470 F ++H++ + + + S Y FGA ++ K + L+G G L Sbjct: 88 FQVNHTISLST------------IGESNYHFGATYVGTKQLGPAEAFPVLVGDFDNSGSL 135 Query: 471 NARVKCDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGN 614 N ++ +T N+ KI Q T + + + +Y+G DY A +GN Sbjct: 136 NGQIIHQVTNNIRSKIALQ-TQQSKFVNWQLDTEYRGEDYTASVTLGN 182
>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 359 Score = 53.9 bits (128), Expect = 4e-07 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Frame = +3 Query: 204 LPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIK 383 LP P +EE R+ L P EG++ K L+ +F ++H+V +G+ Sbjct: 75 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 121 Query: 384 VPTSQYEFGANFLDPKLM--------LIGRLMTDGRLNARVKCDLTENLALKINAQLTSE 539 + S Y FG ++ K + L+G + G LNA+V L+ L K+ Q T + Sbjct: 122 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 180 Query: 540 PHYSQGMFNFDYKGTDYRAQFQIGN 614 + + +Y+G+D+ A +GN Sbjct: 181 SKFVNWQVDGEYRGSDFTAAVTLGN 205
>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (38 kDa mitochondrial outer membrane protein) (OM38) Length = 361 Score = 53.9 bits (128), Expect = 4e-07 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Frame = +3 Query: 204 LPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIK 383 LP P +EE R+ L P EG++ K L+ +F ++H+V +G+ Sbjct: 77 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 123 Query: 384 VPTSQYEFGANFLDPKLM--------LIGRLMTDGRLNARVKCDLTENLALKINAQLTSE 539 + S Y FG ++ K + L+G + G LNA+V L+ L K+ Q T + Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182 Query: 540 PHYSQGMFNFDYKGTDYRAQFQIGN 614 + + +Y+G+D+ A +GN Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGN 207
>TM40L_MOUSE (Q9CZR3) Protein TOMM40-like| Length = 308 Score = 52.8 bits (125), Expect = 9e-07 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 2/172 (1%) Frame = +3 Query: 132 GLA--GILPPKSDGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKML 305 GLA G LP +S ++EE LP P ++E+ R + P EG++ K+L Sbjct: 6 GLAPMGTLPRRSH---RREEP-----LPNPGSFDELHR-LCKDVFPAQMEGVKLVVNKVL 56 Query: 306 TQKFALSHSVLMGSLEVPSQSADVIKVPTSQYEFGANFLDPKLMLIGRLMTDGRLNARVK 485 + F ++H+V M +L +P ++ + P ++G + + G LNA+V Sbjct: 57 SSHFQVAHTVHMSALGLPGYHLHT--AYAGDWQLSPTEVFP--TVVGDMDSSGSLNAQVL 112 Query: 486 CDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGANYI 641 L E L K Q T + + F+ +Y+G DY A +GN G + I Sbjct: 113 LLLAERLRAKAVFQ-TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVI 163
>TM40L_HUMAN (Q969M1) Protein TOMM40-like| Length = 308 Score = 52.4 bits (124), Expect = 1e-06 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 2/172 (1%) Frame = +3 Query: 132 GLA--GILPPKSDGDDKKEEKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKML 305 GLA G LP +S ++EE LP P ++E+ R + P EG++ K+L Sbjct: 6 GLAPMGTLPRRSP---RREEP-----LPNPGSFDELHR-LCKDVFPAQMEGVKLVVNKVL 56 Query: 306 TQKFALSHSVLMGSLEVPSQSADVIKVPTSQYEFGANFLDPKLMLIGRLMTDGRLNARVK 485 + F ++H++ M +L +P ++ + P ++G + + G LNA+V Sbjct: 57 SSHFQVAHTIHMSALGLPGYHLHA--AYAGDWQLSPTEVFP--TVVGDMDSSGSLNAQVL 112 Query: 486 CDLTENLALKINAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGANYI 641 L E L K Q T + + F+ +Y+G DY A +GN G + I Sbjct: 113 LLLAERLRAKAVFQ-TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVI 163
>TOM40_HUMAN (O96008) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (Haymaker protein) (p38.5) Length = 361 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%) Frame = +3 Query: 204 LPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIK 383 LP P +EE R+ L P EG++ K L+ F ++H+V + + Sbjct: 77 LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALST------------ 123 Query: 384 VPTSQYEFGANFLDPKLM--------LIGRLMTDGRLNARVKCDLTENLALKINAQLTSE 539 + S Y FG ++ K + L+G + G LNA+V L L K+ Q T + Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182 Query: 540 PHYSQGMFNFDYKGTDYRAQFQIGN 614 + + +Y+G+D+ A +GN Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGN 207
>TOM40_SCHPO (O13656) Probable mitochondrial import receptor subunit tom40| (Translocase of outer membrane 40 kDa subunit) Length = 344 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 8/152 (5%) Frame = +3 Query: 183 EKVDY----LNLPCPVPYEEIQREALMS--LKPELFEGLRFDFTKMLTQK--FALSHSVL 338 EK+D LNL P E + +E L F G+R D TK F +SH+ Sbjct: 16 EKIDSYKSSLNLINPGTCENLSKEVSKDILLSNYAFTGVRADVTKGFCTSPWFTVSHAFA 75 Query: 339 MGSLEVPSQSADVIKVPTSQYEFGANFLDPKLMLIGRLMTDGRLNARVKCDLTENLALKI 518 +GS +P Y F F L L G + DG + A + C N+ K+ Sbjct: 76 LGSQVLPP------------YSFSTMFGGEPLFLRGSVDNDGAVQAMLNCTWNSNVLSKV 123 Query: 519 NAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGN 614 QL++ + D+KG D+ F+ N Sbjct: 124 QMQLSNGAVPNMCQIEHDHKGKDFSFSFKAMN 155
>TOM40_DROME (Q9U4L6) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (Male sterile protein 15) Length = 344 Score = 43.9 bits (102), Expect = 4e-04 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%) Frame = +3 Query: 213 PVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIKVPT 392 P EE+ ++ ++ FEG + K L+ F +SH++ M + V Sbjct: 60 PGTVEELHKKC-KDIQAITFEGAKIMLNKGLSNHFQVSHTINMSN------------VVP 106 Query: 393 SQYEFGANFLDPK--------LMLIGRLMTDGRLNARVKCDLTENLALKINAQLTSEPHY 548 S Y FGA ++ K +L+G + G LNA V + L K +Q+ E Sbjct: 107 SGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSARLRCKFASQI-QESKV 165 Query: 549 SQGMFNFDYKGTDYRAQFQIGNNAFY 626 DY+G+DY + N + + Sbjct: 166 VASQLTTDYRGSDYTLSLTVANPSIF 191
>TOM40_YEAST (P23644) Mitochondrial import receptor subunit TOM40 (Mitochondrial| import-site-protein ISP42) (Translocase of outer membrane 40 kDa subunit) Length = 387 Score = 37.0 bits (84), Expect = 0.049 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 2/135 (1%) Frame = +3 Query: 225 EEIQREALMSLKPELFEGLRFDFTKMLTQK--FALSHSVLMGSLEVPSQSADVIKVPTSQ 398 +E+ R+ +S F GLR D K + F SH+ +GS +P + Sbjct: 68 KEVSRDVFLS--QYFFTGLRADLNKAFSMNPAFQTSHTFSIGSQALP------------K 113 Query: 399 YEFGANFLDPKLMLIGRLMTDGRLNARVKCDLTENLALKINAQLTSEPHYSQGMFNFDYK 578 Y F A F + L G + D ++ R+ + K+N Q+ S+ + DY+ Sbjct: 114 YAFSALFANDNLFAQGNIDNDLSVSGRLNYGWDKKNISKVNLQI-SDGQPTMCQLEQDYQ 172 Query: 579 GTDYRAQFQIGNNAF 623 +D+ + N +F Sbjct: 173 ASDFSVNVKTLNPSF 187
>SCS22_YEAST (Q6Q595) Vesicle-associated membrane protein-associated protein| SCS22 (VAMP-associated protein SCS22) (VAP homolog 2) Length = 175 Score = 36.2 bits (82), Expect = 0.084 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +3 Query: 153 PKSDGDDKKEEKVD---YLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFAL 323 PKS DD+ ++K D + LP P Y+ ++ L+S P L E + D ++ +K + Sbjct: 69 PKSTADDEMDQKRDKFLIVTLPIPAAYQNVEDGELLSDWPNLEEQYKDD---IVFKKIKI 125 Query: 324 SHSVLMGSLEVPSQSADVIKVPTS 395 HSVL + A+ + P++ Sbjct: 126 FHSVLPKRKPSGNHDAESARAPSA 149
>GLMU_STRT2 (Q5M5C8) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 460 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +3 Query: 519 NAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGAN 635 NA++ S+ ++ G +Y G ++ + QI NNAF G+N Sbjct: 368 NAEVGSDVNFGAGTITVNYDG-QHKFKTQIANNAFIGSN 405
>GLMU_STRT1 (Q5M0U2) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 460 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +3 Query: 519 NAQLTSEPHYSQGMFNFDYKGTDYRAQFQIGNNAFYGAN 635 NA++ S+ ++ G +Y G ++ + QI NNAF G+N Sbjct: 368 NAEVGSDVNFGAGTITVNYDG-QHKFKTQIANNAFIGSN 405
>TOM40_CAEEL (Q18090) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 301 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +3 Query: 213 PVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIKVPT 392 P YEE+ R+A + P FEG + K L+ F +SH++ + ++ Sbjct: 18 PGSYEELHRKA-RDVFPTCFEGAKLMVNKGLSSHFQVSHTLSLSAM-------------N 63 Query: 393 SQYEFGANFL 422 + Y FGA ++ Sbjct: 64 TGYRFGATYV 73
>TOM40_CAEBR (Q61Z83) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 301 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +3 Query: 213 PVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPSQSADVIKVPT 392 P YEE+ R+A + P FEG + K L+ F +SH++ + ++ Sbjct: 18 PGSYEELHRKA-RDVFPTCFEGAKLMVNKGLSSHFQVSHTLSLSAM-------------N 63 Query: 393 SQYEFGANFL 422 + Y FGA ++ Sbjct: 64 TGYRFGATYV 73
>NAL10_MOUSE (Q8CCN1) NACHT-, LRR- and PYD-containing protein 10| Length = 673 Score = 29.6 bits (65), Expect = 7.9 Identities = 22/70 (31%), Positives = 28/70 (40%) Frame = +3 Query: 183 EKVDYLNLPCPVPYEEIQREALMSLKPELFEGLRFDFTKMLTQKFALSHSVLMGSLEVPS 362 E VDYLN C Y EI RE + L+ G+ K+L + S S Sbjct: 81 ELVDYLNQVCLNDYREIYREHVRCLEERQDWGVNSSHNKLLLMATSSSGGRRSPSCSDLE 140 Query: 363 QSADVIKVPT 392 Q D + V T Sbjct: 141 QELDPVDVET 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,029,322 Number of Sequences: 219361 Number of extensions: 1451428 Number of successful extensions: 3245 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3232 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
