ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags23f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 587 e-164
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 188 1e-44
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 165 2e-37
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
7gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.13
8gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.13
9gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.13
10gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.13
11gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 2.0
12gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 2.0
13gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 2.0
14gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 42 2.0
15gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 2.0
16gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 2.0
17gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 7.8
18gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 7.8
19gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 7.8
20gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 7.8
21gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 7.8
22gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 7.8
23emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 7.8
24gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com... 40 7.8
25gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 7.8
26gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 7.8
27gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 7.8
28emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi... 40 7.8

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  587 bits (296), Expect = e-164
 Identities = 320/328 (97%)
 Strand = Plus / Minus

                                                                       
Query: 246 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 305
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 306 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 365
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                                       
Query: 366 aagcatggattcattggatcctgcgacttctggaagaatcacccagacgctataattgca 425
           |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcacccagatgctatagttgca 481

                                                                       
Query: 426 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 421

                                                                       
Query: 486 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 361

                                       
Query: 546 gccctgatacgcgagggggcagctgcat 573
           ||||||||||| ||||||||||||||||
Sbjct: 360 gccctgatacgtgagggggcagctgcat 333



 Score =  242 bits (122), Expect = 1e-60
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 157 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 216
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 217 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 276
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 277 catcttatggcactacaccgacgccatcttacggcactacaccga 321
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  198 bits (100), Expect = 1e-47
 Identities = 112/116 (96%)
 Strand = Plus / Minus

                                                                       
Query: 25  ctgcacatactgagagcaagatgggtggcaaggttcttctgatgagtgctgtcttggtgg 84
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 881 ctgcacacactgagagcaagatgggtggcaaggttcttctgatcagtgccgtcttggtgg 822

                                                                   
Query: 85  ggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcagaagacc 140
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggcttgtttcactgagctcgtgcaggagcctgggagagttgcatgagcagaagacc 766



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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  188 bits (95), Expect = 1e-44
 Identities = 265/322 (82%), Gaps = 6/322 (1%)
 Strand = Plus / Plus

                                                                       
Query: 252 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 311
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                                                       
Query: 312 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 371
           || ||||| |||||||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318

                                                                       
Query: 372 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 431
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378

                                                                       
Query: 432 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 491
           |||||||||||| |||| ||||||||| | ||| |||| |||||| ||||   |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438

                                                                       
Query: 492 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 551
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 498

                                 
Query: 552 atacgcgagggggcagctgcat 573
            | |||||||| ||||||||||
Sbjct: 499 ctccgcgagggagcagctgcat 520



 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 111
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 112 gcctgggagagttgcatgagcagaagacctactcttcttctac 154
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 237 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 296
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 297 acgccatcttacggcactacacc 319
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 213 acaccgacaccaacttacggtactacaccaac 244
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251



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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  165 bits (83), Expect = 2e-37
 Identities = 262/322 (81%), Gaps = 6/322 (1%)
 Strand = Plus / Plus

                                                                       
Query: 252 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 311
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                                                       
Query: 312 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 371
           || ||||| ||| |||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382

                                                                       
Query: 372 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 431
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442

                                                                       
Query: 432 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 491
           |||||||||||| |||| |||| |||| | | | |||| |||||| ||||   |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502

                                                                       
Query: 492 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 551
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 562

                                 
Query: 552 atacgcgagggggcagctgcat 573
            | |||||||| ||||||||||
Sbjct: 563 ctccgcgagggagcagctgcat 584



 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 75
           ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 76  tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 135
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 136 agacctactcttcttctac 154
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 237 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 296
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 297 acgccatcttacggcactacacc 319
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 213 acaccgacaccaacttacggtactacaccaac 244
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                           
Query: 17      tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 75
               ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 76      tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 135
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 136     agacctactcttcttctac 154
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score =  133 bits (67), Expect = 7e-28
 Identities = 151/179 (84%)
 Strand = Plus / Minus

                                                                           
Query: 395     ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 454
               ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415

                                                                           
Query: 455     gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 514
               |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355

                                                                          
Query: 515     actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcat 573
               ||| ||||||||| |||||||||||| ||| || ||| | |||||||| ||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcat 7323296



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 237     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 296
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 297     acgccatcttacggcactacacc 319
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 252     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 311
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 312     actacaccgagcaccccaagtacacct 338
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 213     acaccgacaccaacttacggtactacaccaac 244
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650



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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0035N08
          Length = 136267

 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                          
Query: 17     tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 75
              ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 76     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 135
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 136    agacctactcttcttctac 154
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score =  133 bits (67), Expect = 7e-28
 Identities = 151/179 (84%)
 Strand = Plus / Minus

                                                                         
Query: 395   ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 454
             ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223

                                                                         
Query: 455   gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 514
             |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163

                                                                        
Query: 515   actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcat 573
             ||| ||||||||| |||||||||||| ||| || ||| | |||||||| ||||||||||
Sbjct: 99162 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcat 99104



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 237   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 296
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 297   acgccatcttacggcactacacc 319
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 252   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 311
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 312   actacaccgagcaccccaagtacacct 338
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 213   acaccgacaccaacttacggtactacaccaac 244
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458



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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 485 tggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattgg 544
           |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||| |||
Sbjct: 9   tggcaagaagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactgg 68

                                        
Query: 545 cgccctgatacgcgagggggcagctgcat 573
            || ||| | |||||||| ||||||||||
Sbjct: 69  tgctctgctccgcgagggagcagctgcat 97



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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 359   tccaaagaagcatggattcattg 381
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 359   tccaaagaagcatggattcattg 381
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 359   tccaaagaagcatggattcattg 381
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669



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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 359   tccaaagaagcatggattcattg 381
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407



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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    accttcccatgaagtccctgc 355
              |||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctgc 115193



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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 319 cgagcaccccaagtacacctt 339
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695



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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 510   gatgcactctcaaacactagaactg 534
             ||||||||||||||| |||||||||
Sbjct: 18448 gatgcactctcaaactctagaactg 18472



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 510   gatgcactctcaaacactagaactg 534
             ||||||||||||||| |||||||||
Sbjct: 17278 gatgcactctcaaactctagaactg 17254



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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 46     tgggtggcaaggttcttctgatgag 70
              ||||||||||||||| |||||||||
Sbjct: 168930 tgggtggcaaggttcatctgatgag 168954



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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 491    gaagctaggaaatatgcatga 511
              |||||||||||||||||||||
Sbjct: 108440 gaagctaggaaatatgcatga 108420



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 510    gatgcactctcaaacactagaactg 534
              ||||||||||||||| |||||||||
Sbjct: 627720 gatgcactctcaaactctagaactg 627744



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 510    gatgcactctcaaacactagaactg 534
              ||||||||||||||| |||||||||
Sbjct: 626550 gatgcactctcaaactctagaactg 626526



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>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     ctgttgtctactctgcacat 32
              ||||||||||||||||||||
Sbjct: 177039 ctgttgtctactctgcacat 177020



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>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ctgttgtctactctgcacat 32
             ||||||||||||||||||||
Sbjct: 81167 ctgttgtctactctgcacat 81148



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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tgcttattctgttgtctact 24
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344



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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ctcctgcaggagcctgggag 120
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833



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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  acgcgagggggcagctgcat 573
            ||||||||||||||||||||
Sbjct: 1738 acgcgagggggcagctgcat 1719



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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   aacccgacaccgacaccaac 226
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867



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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    tggtgctgcatgcagtatga 480
              ||||||||||||||||||||
Sbjct: 114553 tggtgctgcatgcagtatga 114572



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>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  ctcctgcaggagcctgggag 120
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318



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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   accttcccatgaagtccctg 354
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827



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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 361 caaagaagcatggattcattggat 384
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678



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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     aagaagcatggattcattgg 382
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485



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>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 ctcctgcaggagcctgggag 120
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,104,620
Number of Sequences: 3902068
Number of extensions: 4104620
Number of successful extensions: 72959
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72844
Number of HSP's gapped (non-prelim): 97
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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