ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags23e21 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_ACIAD (Q6FF40) Translation initiation factor IF-2| Length = 899 Score = 34.3 bits (77), Expect = 0.27 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = -3 Query: 566 GVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPK----VSREKVQQLQE 399 G E+ ++T++R T +AST+ KA+T V ++K + TKP + K +Q E Sbjct: 55 GQESGAGKITLKRKTTSTAKVASTSGKAKTINVEVRKKHTFTKPNPEQIAAEAKARQETE 114 Query: 398 NPVEP 384 P Sbjct: 115 ERTRP 119
>SPKB_SYNY3 (P74297) Serine/threonine-protein kinase B (EC 2.7.11.1)| Length = 574 Score = 33.1 bits (74), Expect = 0.60 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Frame = +2 Query: 170 FHDTLSNSTFHEAHTSL--FTDCKDKNKKMSNRSAMDQYFI*SDRRGSRAESCLIFNTWF 343 + L+N+ F +A + F + KN + D YF +D RG+ + F Sbjct: 472 YQANLTNANFEQAELTRADFGKARLKNVIFKGANLSDAYFGYADLRGADLRGANLNGVNF 531 Query: 344 SSKGFQGRKFSRGGVLLGSLAAAVPFLLKLLVLSWR 451 QG FS G LGS A P LKL +WR Sbjct: 532 KYANLQGANFS--GADLGS-AKVSPEQLKLAKTNWR 564
>GP27_BPSP1 (P06228) Gene 27 protein| Length = 155 Score = 32.7 bits (73), Expect = 0.79 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -3 Query: 533 QRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEP 384 ++ TK + +TAK E + A K K +K KPK S+ K + ENP P Sbjct: 65 EKPTTKKTTAKKSTAKEEKKETAPKAKETKAKPK-SKPKKAKAPENPNLP 113
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Frame = -3 Query: 554 NKPRVTVQRLVTKVPSLASTTAKAET-RPVATKQKTSK---TKPKVSREKVQQL 405 +KP T ++ T++P TT KA T +P TK T+K TKP +++ QL Sbjct: 71 SKP-TTPKQTTTQLPCTTPTTTKATTTKPTTTKATTTKATTTKPTTTKQTTTQL 123
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -2 Query: 522 HKSSLPSIYHCKGGNATCRYKTENLQDKTKSFKRKGTAAAREP 394 H+SS ++++ +G CR K E Q+K + K K AA EP Sbjct: 137 HRSSAQNVHNDRGKAVRCREKKE--QNKGREEKNKSPAAVTEP 177
>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3461 Score = 30.0 bits (66), Expect = 5.1 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +3 Query: 9 RFLNFASCIHVADVQIQCTQELKKFKHEE-----IIKQYTPHAQGQAEGKKYSYQR 161 ++++ SC+ + + +C Q K +K I K Y H +G+ E Y +R Sbjct: 1484 KYIHLRSCVVIIQTRFRCLQAQKSYKRRREAILTIQKFYRAHLKGKTERANYLQKR 1539
>NKX32_HUMAN (P78367) Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog| 1) Length = 333 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 338 WFSSKGFQGRKFSRGGVLLGSLAAAVPFLLKLLVLSWRFSVL*RQVAFPPLQW*MLGREL 517 WF ++ ++ ++ LL S AA +K+LV + L +V PP Sbjct: 253 WFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPS--------- 303 Query: 518 L*PISGQ*P*VYYFPHLCLP 577 L P+ YY+P+ CLP Sbjct: 304 LLPLQPS----YYYPYYCLP 319
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -3 Query: 506 LASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEPPP 378 L ++ + E P ++ KT + KP+V + +++L+E PPP Sbjct: 189 LEESSHEPEPEP-ESETKTEELKPQVEEKNLEELEEKSTTPPP 230
>NU6C_WHEAT (Q95H44) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 176 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 173 GIIISLVAIFFSFSLSLSMRCILFDNFFMFKLFEFLCTLNLYVGNMN 33 G+++ I+ +FSL L + CI F + F + L +YVG +N Sbjct: 25 GVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAIN 71
>NU6C_SACOF (Q6ENP4) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 176 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 173 GIIISLVAIFFSFSLSLSMRCILFDNFFMFKLFEFLCTLNLYVGNMN 33 G+++ I+ +FSL L + CI F + F + L +YVG +N Sbjct: 25 GVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAIN 71
>NU6C_SACHY (Q6L3D7) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 176 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 173 GIIISLVAIFFSFSLSLSMRCILFDNFFMFKLFEFLCTLNLYVGNMN 33 G+++ I+ +FSL L + CI F + F + L +YVG +N Sbjct: 25 GVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAIN 71
>NU6C_MAIZE (P46621) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 176 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 173 GIIISLVAIFFSFSLSLSMRCILFDNFFMFKLFEFLCTLNLYVGNMN 33 G+++ I+ +FSL L + CI F + F + L +YVG +N Sbjct: 25 GVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAIN 71
>NU6C_HORVU (O98693) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 176 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 173 GIIISLVAIFFSFSLSLSMRCILFDNFFMFKLFEFLCTLNLYVGNMN 33 G+++ I+ +FSL L + CI F + F + L +YVG +N Sbjct: 25 GVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAIN 71
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -3 Query: 506 LASTTAKAETRPVATKQKTSKTKPKVSREKVQQLQENPVEPPP 378 L ++ + E P ++ KT + KP+V + +++L+E PPP Sbjct: 189 LEESSHEPEPEP-ESETKTEELKPQVEEKHLEELEEKSATPPP 230
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -3 Query: 584 PAKVNRGVENNKPRVTVQRLVTKVPSLASTTAKAETRPVATKQKTSKTKPKVSREKVQQL 405 PA G N KP V P A A RP + K KP ++ KV + Sbjct: 699 PAPTTSGGLNKKPMSLASGSVPAAPHKRPAAATATARPSTLPARDVKPKP-ITEAKVAEK 757 Query: 404 QENPVEP 384 + +P +P Sbjct: 758 RTSPSKP 764
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 441 CLGGFLFCSDRSRFRLCSGRC*GGNFCDQSLDSN 542 CL GFL DR ++R CSG C C + D + Sbjct: 4294 CLPGFL--GDRCQYRQCSGYCENFGTCQMAADGS 4325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,568,882 Number of Sequences: 219361 Number of extensions: 1581047 Number of successful extensions: 4481 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4477 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
