ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23e21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 171 tccacgatactttgagcaattcaactttccatgaagcacacacctcactattcac-agac 229 |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct: 106187 tccacggtactttgagcgaatcaactttccatgaagcacacacctcactattcacaagac 106128 Query: 230 tgcaag 235 |||||| Sbjct: 106127 tgcaag 106122 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Minus Query: 400 tcttgcagctgctgtaccttttctcttgaaacttttggttttgtcttggaggttttctgt 459 ||||||| |||| |||||| |||||| | ||||||||||||| || ||||||||||| Sbjct: 105954 tcttgcaattgctctaccttggctcttggagcttttggttttgtgtttgaggttttctgc 105895 Query: 460 tttgtagcgacaggtcgcgtttccgcctttgcagtggtagatgctagggagggaactttt 519 ||||| | | ||| || || | ||||||||||| ||||||| |||| |||| |||| Sbjct: 105894 tttgtcacaaggggttttgtctcggtctttgcagtggcagatgcttgggaaggaattttt 105835 Query: 520 gtgac 524 ||||| Sbjct: 105834 gtgac 105830
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 171 tccacgatactttgagcaattcaactttccatgaagcacacacctcactattcac-agac 229 |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct: 20563393 tccacggtactttgagcgaatcaactttccatgaagcacacacctcactattcacaagac 20563334 Query: 230 tgcaag 235 |||||| Sbjct: 20563333 tgcaag 20563328 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Minus Query: 400 tcttgcagctgctgtaccttttctcttgaaacttttggttttgtcttggaggttttctgt 459 ||||||| |||| |||||| |||||| | ||||||||||||| || ||||||||||| Sbjct: 20563160 tcttgcaattgctctaccttggctcttggagcttttggttttgtgtttgaggttttctgc 20563101 Query: 460 tttgtagcgacaggtcgcgtttccgcctttgcagtggtagatgctagggagggaactttt 519 ||||| | | ||| || || | ||||||||||| ||||||| |||| |||| |||| Sbjct: 20563100 tttgtcacaaggggttttgtctcggtctttgcagtggcagatgcttgggaaggaattttt 20563041 Query: 520 gtgac 524 ||||| Sbjct: 20563040 gtgac 20563036
>dbj|AK073940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076E07, full insert sequence Length = 1865 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 171 tccacgatactttgagcaattcaactttccatgaagcacacacctcactattcac-agac 229 |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct: 1653 tccacggtactttgagcgaatcaactttccatgaagcacacacctcactattcacaagac 1594 Query: 230 tgcaag 235 |||||| Sbjct: 1593 tgcaag 1588 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Minus Query: 400 tcttgcagctgctgtaccttttctcttgaaacttttggttttgtcttggaggttttctgt 459 ||||||| |||| |||||| |||||| | ||||||||||||| || ||||||||||| Sbjct: 1420 tcttgcaattgctctaccttggctcttggagcttttggttttgtgtttgaggttttctgc 1361 Query: 460 tttgtagcgacaggtcgcgtttccgcctttgcagtggtagatgctagggagggaactttt 519 ||||| | | ||| || || | ||||||||||| ||||||| |||| |||| |||| Sbjct: 1360 tttgtcacaaggggttttgtctcggtctttgcagtggcagatgcttgggaaggaattttt 1301 Query: 520 gtgac 524 ||||| Sbjct: 1300 gtgac 1296
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 91.7 bits (46), Expect = 2e-15 Identities = 62/66 (93%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 171 tccacgatactttgagcaattcaactttccatgaagcacacacctcactattcac-agac 229 |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct: 20873628 tccacggtactttgagcgaatcaactttccatgaagcacacacctcactattcacaagac 20873569 Query: 230 tgcaag 235 |||||| Sbjct: 20873568 tgcaag 20873563 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Minus Query: 400 tcttgcagctgctgtaccttttctcttgaaacttttggttttgtcttggaggttttctgt 459 ||||||| |||| |||||| |||||| | ||||||||||||| || ||||||||||| Sbjct: 20873395 tcttgcaattgctctaccttggctcttggagcttttggttttgtgtttgaggttttctgc 20873336 Query: 460 tttgtagcgacaggtcgcgtttccgcctttgcagtggtagatgctagggagggaactttt 519 ||||| | | ||| || || | ||||||||||| ||||||| |||| |||| |||| Sbjct: 20873335 tttgtcacaaggggttttgtctcggtctttgcagtggcagatgcttgggaaggaattttt 20873276 Query: 520 gtgac 524 ||||| Sbjct: 20873275 gtgac 20873271
>gb|AY596613.1| Saccharum officinarum clone SCAGLR1043G10, complete sequence Length = 1506 Score = 69.9 bits (35), Expect = 9e-09 Identities = 48/51 (94%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 179 actttgagcaattcaactttccatgaagcacaca-cctcactattcacaga 228 ||||||||| ||||||||||| |||||||||||| |||||||||||||||| Sbjct: 911 actttgagcgattcaactttcaatgaagcacacaccctcactattcacaga 861 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 81 tttaaacatgaagaaattatcaaacaatatacaccgcatgctcaaggacaagctgaa 137 |||||||||||| | | |||||| ||||||||| |||||||||| ||||||||||| Sbjct: 1008 tttaaacatgaacacaatatcaagcaatatacatggcatgctcaatgacaagctgaa 952
>gb|BT016481.1| Zea mays clone Contig314 mRNA sequence Length = 1127 Score = 46.1 bits (23), Expect = 0.13 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 179 actttgagcaattcaactttccatgaagcacaca-cctcactattcacaga 228 |||| |||| ||||||||| | |||||||||||| |||| ||||||||||| Sbjct: 992 acttcgagcgattcaacttccaatgaagcacacaccctcgctattcacaga 942
>emb|AL590102.5| Human DNA sequence from clone RP11-543A19 on chromosome 13, complete sequence Length = 66386 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 90 gaagaaattatcaaacaatatac 112 ||||||||||||||||||||||| Sbjct: 23369 gaagaaattatcaaacaatatac 23347
>gb|AY105843.1| Zea mays PCO073973 mRNA sequence Length = 1351 Score = 46.1 bits (23), Expect = 0.13 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 179 actttgagcaattcaactttccatgaagcacaca-cctcactattcacaga 228 |||| |||| ||||||||| | |||||||||||| |||| ||||||||||| Sbjct: 1179 acttcgagcgattcaacttccaatgaagcacacaccctcgctattcacaga 1129
>emb|AL121950.8|HSDJ442L6 Human DNA sequence from clone RP3-442L6 on chromosome 6 Contains the 5' end of RHAG gene for Rhesus blood group-associated glycoprotein (RH50A), the TPX1 gene for Testis specific protein 1 and the 3' end of the gene for specific granule protein (28 kDa) (SGP28), complete sequence Length = 118524 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 ttttctgttttgtagcgacagg 473 |||||||||||||||||||||| Sbjct: 17197 ttttctgttttgtagcgacagg 17218
>gb|AC154647.2| Mus musculus BAC clone RP23-283P8 from chromosome 17, complete sequence Length = 208252 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tcctgtctcatcttcaacact 337 ||||||||||||||||||||| Sbjct: 78129 tcctgtctcatcttcaacact 78149
>emb|BX927325.15| Zebrafish DNA sequence from clone DKEYP-47G1 in linkage group 7, complete sequence Length = 208845 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 aaacatgaagaaattatcaaa 104 ||||||||||||||||||||| Sbjct: 172427 aaacatgaagaaattatcaaa 172447
>ref|XM_537239.2| PREDICTED: Canis familiaris similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) (LOC480117), mRNA Length = 2868 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 tcagcagcaagggcttccaag 362 ||||||||||||||||||||| Sbjct: 2546 tcagcagcaagggcttccaag 2526
>gb|AC112677.8| Mus musculus chromosome 3, clone RP23-176J23, complete sequence Length = 215247 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 attcaatgtacacaagaactcaaaaagtt 82 ||||||| || |||||||||||||||||| Sbjct: 80151 attcaatatatacaagaactcaaaaagtt 80123
>gb|AC156564.3| Mus musculus BAC clone RP24-81G20 from chromosome 8, complete sequence Length = 196445 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 agctaccaaagaaataataat 170 ||||||||||||||||||||| Sbjct: 57188 agctaccaaagaaataataat 57208
>emb|BX284652.4| Human DNA sequence from clone RP11-66A2 on chromosome 1 Contains the 3' end of a novel gene and a novel gene (FLJ35881), complete sequence Length = 49477 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 aaacttttggttttgtcttgg 448 ||||||||||||||||||||| Sbjct: 7928 aaacttttggttttgtcttgg 7948
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 catgaagaaattatcaaacaa 107 ||||||||||||||||||||| Sbjct: 28637846 catgaagaaattatcaaacaa 28637826
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 catgaagaaattatcaaacaa 107 ||||||||||||||||||||| Sbjct: 20920 catgaagaaattatcaaacaa 20900
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 catgaagaaattatcaaacaa 107 ||||||||||||||||||||| Sbjct: 164285 catgaagaaattatcaaacaa 164265
>gb|AC151576.2| Mus musculus BAC clone RP24-260K24 from 8, complete sequence Length = 162663 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 agctaccaaagaaataataat 170 ||||||||||||||||||||| Sbjct: 98505 agctaccaaagaaataataat 98525
>gb|AC124491.5| Mus musculus BAC clone RP23-454B2 from chromosome 8, complete sequence Length = 187779 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 agctaccaaagaaataataat 170 ||||||||||||||||||||| Sbjct: 173941 agctaccaaagaaataataat 173961
>emb|CT573032.5| Mouse DNA sequence from clone RP24-315C3 on chromosome 17, complete sequence Length = 40018 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 gctgctgtaccttttctcttgaaac 431 ||||||||||||||||||| ||||| Sbjct: 19675 gctgctgtaccttttctctggaaac 19699
>gb|AC151272.2| Mus musculus BAC clone RP24-208G22 from 17, complete sequence Length = 148109 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 407 gctgctgtaccttttctcttgaaac 431 ||||||||||||||||||| ||||| Sbjct: 39032 gctgctgtaccttttctctggaaac 39008
>gb|AC147085.3| Mus musculus BAC clone RP23-356J12 from 8, complete sequence Length = 209306 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 agctaccaaagaaataataat 170 ||||||||||||||||||||| Sbjct: 102585 agctaccaaagaaataataat 102605
>emb|AL355433.6|HS179D22 Homo sapiens chromosome 9 BAC RP11-179D22, complete sequence Length = 177219 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 gaaacttttggttttgtcttg 447 ||||||||||||||||||||| Sbjct: 19108 gaaacttttggttttgtcttg 19128
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aactcaaaaagtttaaacat 89 |||||||||||||||||||| Sbjct: 51771 aactcaaaaagtttaaacat 51790
>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete sequence Length = 162651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 8526 ttggaggttttctgttttgt 8507
>gb|AC110602.8| Homo sapiens chromosome 17, clone RP11-67D12, complete sequence Length = 160854 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 aggtttttgaattttgcaagttgc 32 |||||||| ||||||||||||||| Sbjct: 144797 aggttttttaattttgcaagttgc 144774
>gb|AC002529.1| Homo sapiens BAC clone CTB-161N6 from 7, complete sequence Length = 136755 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ccttttctcttgaaactttt 435 |||||||||||||||||||| Sbjct: 52703 ccttttctcttgaaactttt 52722
>gb|AC005062.1| Homo sapiens BAC clone CTB-95A14 from 7, complete sequence Length = 119927 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tcaaaaagtttaaacatgaa 92 |||||||||||||||||||| Sbjct: 96563 tcaaaaagtttaaacatgaa 96544
>gb|AC111155.11| Homo sapiens chromosome 17, clone CTD-2327L2, complete sequence Length = 32601 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 aggtttttgaattttgcaagttgc 32 |||||||| ||||||||||||||| Sbjct: 26499 aggttttttaattttgcaagttgc 26522
>emb|BX005297.22| Zebrafish DNA sequence from clone CH211-271B8 in linkage group 3, complete sequence Length = 156906 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 agtttaaacatgaagaaattatcaaaca 106 ||||||||||| |||||||||| ||||| Sbjct: 41595 agtttaaacattaagaaattattaaaca 41622
>gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete sequence Length = 131700 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aagaaattatcaaacaatat 110 |||||||||||||||||||| Sbjct: 84040 aagaaattatcaaacaatat 84059
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two novel pseudogenes, a novel gene, a pseudogene similar to part of double homeobox, 4 (DUX4), a FSHD region gene 1 (FRG1) pseudogene and four CpG islands, complete sequence Length = 191980 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 149477 ttggaggttttctgttttgt 149458
>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a novel gene, two novel pseudogenes, a pseudogene similar to part of myosin V family protein, a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene similar to part of prostaglandin E receptor 4 (subtype EP4) (PTGER4) and a CpG island, complete sequence Length = 163569 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 7807 ttggaggttttctgttttgt 7788
>emb|AL845472.3| Human DNA sequence from clone RP11-4L24 on chromosome 9 Contains a pseudogene similar to part of myosin VB (MYO5B), a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene and a CpG island, complete sequence Length = 42569 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 23026 ttggaggttttctgttttgt 23045
>emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on chromosome 9 Contains three novel genes, a novel pseudogene, two novel pseudogenes (LOC339742), a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene similar to part of prostaglandin E receptor 4 (subtype EP4) (PTGER4), a pseudogene similar to part of myosin VA (heavy polypeptide 12, myoxin) (MYO5A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), a pseudogene similar to part of fibroblast growth factor 7 (keratinocyte growth factor) (FGF7) and five CpG islands, complete sequence Length = 159539 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 52245 ttggaggttttctgttttgt 52226
>emb|AL353135.32| Human DNA sequence from clone RP11-63L7 on chromosome 6 Contains the PROL2 gene for proline rich 2 (proline-rich protein with nuclear targeting signal), the gene for NB4 apoptosis/differentiation related protein (PNAS-145), the gene for serine-arginine repressor protein (35kDa) (SRrp35), the gene for a novel protein similar to putative amidohydrolase, the 3' end of the GABRR1 gene for gamma-aminobutyric acid (GABA) receptor, rho 1 and 3 CpG islands, complete sequence Length = 127653 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 ttttgtcttggaggttttct 457 |||||||||||||||||||| Sbjct: 29480 ttttgtcttggaggttttct 29461
>emb|AL136528.11| Human DNA sequence from clone RP5-1092A11 on chromosome 1p36.2-36.33 Contains the 5' end of the gene for a novel protein (FLJ32825), a novel gene (KIAA0495), two novel genes, the TP73 gene for tumor protein p73, the 5' end of the WDR8 gene for WD repeat domain 8 and five CpG islands, complete sequence Length = 138941 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 gaggttttctgttttgtagc 467 |||||||||||||||||||| Sbjct: 120366 gaggttttctgttttgtagc 120347
>gb|AC096363.8| Rattus norvegicus 1 BAC CH230-54P17 (Children's Hospital Oakland Research Institute) complete sequence Length = 215356 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 actgggttctcttgcagctgctgt 414 ||||||||||||||| |||||||| Sbjct: 10689 actgggttctcttgctgctgctgt 10666
>gb|AC153499.7| Mus musculus 10 BAC RP23-478J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207222 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aagaactcaaaaagtttaaa 86 |||||||||||||||||||| Sbjct: 111964 aagaactcaaaaagtttaaa 111983
>gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromosome 9, complete sequence Length = 159456 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 20241 ttggaggttttctgttttgt 20222
>emb|AL021767.1|SPBC16C6 S.pombe chromosome II cosmid c16C6 Length = 34722 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tcagccatggaccagtactt 282 |||||||||||||||||||| Sbjct: 32791 tcagccatggaccagtactt 32772
>emb|CR854925.5| Zebrafish DNA sequence from clone CH211-199I24 in linkage group 13, complete sequence Length = 58279 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaaaagtttaaacatgaaga 94 |||||||||||||||||||| Sbjct: 29747 aaaaagtttaaacatgaaga 29766
>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 163556 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 7807 ttggaggttttctgttttgt 7788
>emb|CR861272.1| Pongo pygmaeus mRNA; cDNA DKFZp459N143 (from clone DKFZp459N143) Length = 4082 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 535 acagtaaccctaggtttattattt 558 ||||||||||| |||||||||||| Sbjct: 3753 acagtaaccctgggtttattattt 3730
>gb|AC092023.2| Homo sapiens chromosome 3 clone RP11-13C14, complete sequence Length = 164991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tttaaacatgaagaaattat 100 |||||||||||||||||||| Sbjct: 118465 tttaaacatgaagaaattat 118484
>gb|AC099776.2| Homo sapiens chromosome 3 clone RP11-280I3, complete sequence Length = 171347 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tttaaacatgaagaaattat 100 |||||||||||||||||||| Sbjct: 171068 tttaaacatgaagaaattat 171049
>gb|AC087174.4| Homo sapiens chromosome 11, clone RP11-640J11, complete sequence Length = 187218 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaattcaatgtacacaa 68 |||||||||||||||||||| Sbjct: 134439 tacaaattcaatgtacacaa 134458
>ref|XM_626899.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_3480), partial mRNA Length = 7737 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 gtttaaacatgaagaaattatcaaacaa 107 ||||||| |||||||||||||| ||||| Sbjct: 4014 gtttaaagatgaagaaattatcgaacaa 4041
>ref|NM_001023831.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC16C6.12c), partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tcagccatggaccagtactt 282 |||||||||||||||||||| Sbjct: 1044 tcagccatggaccagtactt 1063
>gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N14, complete sequence Length = 215111 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ttctcttgcagctgctgtac 416 |||||||||||||||||||| Sbjct: 176076 ttctcttgcagctgctgtac 176057
>gb|AF235000.1|AF235000 Homo sapiens tumor protein p73 (TP73), promoter region and exon 1, partial sequence Length = 7073 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 gaggttttctgttttgtagc 467 |||||||||||||||||||| Sbjct: 342 gaggttttctgttttgtagc 361
>gb|AC117381.5| Homo sapiens 3 BAC RP11-783D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tgaattttgcaagttgcatt 35 |||||||||||||||||||| Sbjct: 71504 tgaattttgcaagttgcatt 71485
>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168396 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 catggaccagtacttcattt 287 |||||||||||||||||||| Sbjct: 103604 catggaccagtacttcattt 103623
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 caagaactcaaaaagtttaa 85 |||||||||||||||||||| Sbjct: 212335 caagaactcaaaaagtttaa 212354
>emb|AJ292266.2|NTA292266 Nicotiana tabacum R8.3 middle repetitive sequence Length = 5618 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 aataataattccacgatactttga 185 |||||||||| ||||||||||||| Sbjct: 2638 aataataattacacgatactttga 2615
>emb|AJ324458.1|HSA324458 Homo sapiens genomic sequence surrounding NotI site, clone NR1-BJ19C Length = 683 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 ttttctgttttgtagcgacaggtc 475 |||||| ||||||||||||||||| Sbjct: 677 ttttcttttttgtagcgacaggtc 654
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete sequence Length = 176845 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttggaggttttctgttttgt 464 |||||||||||||||||||| Sbjct: 162097 ttggaggttttctgttttgt 162116
>dbj|AP001880.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-3110P2, complete sequences Length = 169776 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tacaaattcaatgtacacaa 68 |||||||||||||||||||| Sbjct: 47845 tacaaattcaatgtacacaa 47826
>dbj|AP003420.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-614K12, complete sequence Length = 160945 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tacaaattcaatgtacacaa 68 |||||||||||||||||||| Sbjct: 130178 tacaaattcaatgtacacaa 130159
>emb|AL807375.14| Mouse DNA sequence from clone RP23-247H23 on chromosome X, complete sequence Length = 143779 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 ttttgtgaccaatctctggacagt 539 ||||||||||||| |||||||||| Sbjct: 42660 ttttgtgaccaatatctggacagt 42637
>dbj|AP006103.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11J24, TM0185, complete sequence Length = 121047 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tgggttctcttgcagctgct 412 |||||||||||||||||||| Sbjct: 51397 tgggttctcttgcagctgct 51416
>gb|U57825.1|NTU57825 Nicotiana tabacum endopeptidase-like protein mRNA, partial cds Length = 475 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tttaaacatgaagaaattat 100 |||||||||||||||||||| Sbjct: 1 tttaaacatgaagaaattat 20
>gb|U57824.1|NTU57824 Nicotiana tabacum endopeptidase-like protein gene, partial cds Length = 1107 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tttaaacatgaagaaattat 100 |||||||||||||||||||| Sbjct: 822 tttaaacatgaagaaattat 841
>emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-409I10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151853 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaattcaatgtacacaa 68 |||||||||||||||||||| Sbjct: 67646 tacaaattcaatgtacacaa 67665
>emb|AJ293237.1|NTA293237 Nicotiana tabacum R8.3M middle repetitive sequence, transposon Tn10-Seq and copia-like retrotransposon remnant Length = 6959 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 aataataattccacgatactttga 185 |||||||||| ||||||||||||| Sbjct: 3980 aataataattacacgatactttga 3957 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,492,286 Number of Sequences: 3902068 Number of extensions: 6492286 Number of successful extensions: 138617 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138261 Number of HSP's gapped (non-prelim): 355 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
