ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22p13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA sequence Length = 1821 Score = 1176 bits (593), Expect = 0.0 Identities = 657/677 (97%), Gaps = 1/677 (0%) Strand = Plus / Plus Query: 5 cgacaaaatggtacaaggnaacaaggtattgaacttgttcttggaacaagagtgatatct 64 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 cgacaaaatggtacaagg-aacaaggtattgaacttgttcttggaacaagagtgatatct 443 Query: 65 gctgatgtgagacggaagacattgcttacagcaactggagaaactatcagctataagaca 124 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 gctgatgtgagacggaagacattgcttacagcaactggagaaactatcagctataagacg 503 Query: 125 cttataattgcaacaggtgctcgggctttaaagctggaagagtttggaataagtggttcg 184 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 504 cttataattgcaacaggtgctcgggctttgaagctggaagagtttggaataagcggttca 563 Query: 185 gatgctgaaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcg 244 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 gatgctgcaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcg 623 Query: 245 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 683 Query: 305 tgtgcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacac 364 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 684 tgtgcagcagcattggttactaataagataaaagtaaccatggtctttcctgaaaaacac 743 Query: 365 tgcatgggtcggctatttacagaaaaaattgctgaatattatgaaagctactacacttcg 424 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct: 744 tgcatgggtcggctatttacagaaaaaattgcagaatattatgaaagctactacactttg 803 Query: 425 aaaggagttacttttaccaaaggaactgtgcttacatcatttgaaaaggactcaacaggg 484 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 804 aaaggagttacttttaccaaaggaactgtgcttacatcctttgaaaaagactcaacaggg 863 Query: 485 aaggtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagtt 544 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 864 aaggtgacttcagtaatcctaaaagatggcaaccaccttcctgctgatatggtagtagtt 923 Query: 545 ggtattgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggc 604 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 924 ggtattgggatccgtgcaaataccagcctttttgaaggccagctgctgatggagaagggc 983 Query: 605 ggcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgat 664 ||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 984 ggcattaaggtaaatgggcaaatgcaaactagcgacagctccgtgtatgctgttggtgat 1043 Query: 665 gttgccgcgttccccat 681 ||||||||||||||||| Sbjct: 1044 gttgccgcgttccccat 1060
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase Length = 1250 Score = 1053 bits (531), Expect = 0.0 Identities = 534/535 (99%) Strand = Plus / Plus Query: 147 gggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttatt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 gggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttatt 70 Query: 207 tgcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaa 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 tgcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaa 130 Query: 267 atgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttacta 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 atgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttacta 190 Query: 327 ataagataaaagtaaccatggtcttccctgaaaaacactgcatgggtcggctatttacag 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 ataagataaaagtaaccatggtcttccctgaaaaacactgcatgggtcggctatttacag 250 Query: 387 aaaaaattgctgaatattatgaaagctactacacttcgaaaggagttacttttaccaaag 446 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 aaaaacttgctgaatattatgaaagctactacacttcgaaaggagttacttttaccaaag 310 Query: 447 gaactgtgcttacatcatttgaaaaggactcaacagggaaggtgacttcggtaatcctaa 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 gaactgtgcttacatcatttgaaaaggactcaacagggaaggtgacttcggtaatcctaa 370 Query: 507 aagatggtaaccaccttcctgctgatatggtagtagttggtattgggatccgtgcaaata 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 aagatggtaaccaccttcctgctgatatggtagtagttggtattgggatccgtgcaaata 430 Query: 567 ccagcctttttgaaggtcagctgctgatggagaaaggcggcataaaagtaaacgggcaaa 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 ccagcctttttgaaggtcagctgctgatggagaaaggcggcataaaagtaaacgggcaaa 490 Query: 627 tgcaaaccagcgacagctcggtgtatgctgttggtgatgttgccgcgttccccat 681 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 tgcaaaccagcgacagctcggtgtatgctgttggtgatgttgccgcgttccccat 545
>ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1822 Score = 634 bits (320), Expect = e-179 Identities = 584/671 (87%), Gaps = 1/671 (0%) Strand = Plus / Plus Query: 8 caaaatggtacaaggnaacaaggtattgaacttgttcttggaacaagagtgatatctgct 67 ||||||||||||| | || | ||||||||||||||||||||||||| ||||||| | ||| Sbjct: 412 caaaatggtacaaagaaa-atggtattgaacttgttcttggaacaaaagtgataaccgct 470 Query: 68 gatgtgagacggaagacattgcttacagcaactggagaaactatcagctataagacactt 127 ||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 471 gatgtaaggatgaagacattgcttacagccactggagaaactatcagctataagaatctt 530 Query: 128 ataattgcaacaggtgctcgggctttaaagctggaagagtttggaataagtggttcggat 187 || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||| Sbjct: 531 atcattgcgaccggtgctcgggctttgaagctggaagagtttggaatcagtggatcagat 590 Query: 188 gctgaaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcgatg 247 ||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||| Sbjct: 591 gcttcgaacatatgttatttgcgcaatcttgatgatgcggataagttagtgaatgtgatg 650 Query: 248 agctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaatgt 307 | |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| || Sbjct: 651 aaatcatgtcctggtggaaatgctgtcgtcattggtggtggctatataggaatggagtgc 710 Query: 308 gcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacactgc 367 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 711 gcagcagcattggttactaataggataaaagtaaccatggtcttccctgaaagccactgc 770 Query: 368 atgggtcggctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaa 427 |||| || ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 771 atggcccgtctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaa 830 Query: 428 ggagttacttttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaag 487 || ||||| ||| ||||||||||||||||||||| |||||||| || || ||||||||| Sbjct: 831 ggtgttacctttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaag 890 Query: 488 gtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttggt 547 |||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||| Sbjct: 891 gtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttggt 950 Query: 548 attgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcggc 607 ||||| |||||||||| || | |||||||||||||||||| |||||||| |||| || Sbjct: 951 attggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtggg 1010 Query: 608 ataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatgtt 667 ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||||| Sbjct: 1011 ataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatgtt 1070 Query: 668 gccgcgttccc 678 || || ||||| Sbjct: 1071 gctgccttccc 1081
>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full insert sequence Length = 1821 Score = 634 bits (320), Expect = e-179 Identities = 584/671 (87%), Gaps = 1/671 (0%) Strand = Plus / Plus Query: 8 caaaatggtacaaggnaacaaggtattgaacttgttcttggaacaagagtgatatctgct 67 ||||||||||||| | || | ||||||||||||||||||||||||| ||||||| | ||| Sbjct: 411 caaaatggtacaaagaaa-atggtattgaacttgttcttggaacaaaagtgataaccgct 469 Query: 68 gatgtgagacggaagacattgcttacagcaactggagaaactatcagctataagacactt 127 ||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 470 gatgtaaggatgaagacattgcttacagccactggagaaactatcagctataagaatctt 529 Query: 128 ataattgcaacaggtgctcgggctttaaagctggaagagtttggaataagtggttcggat 187 || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||| Sbjct: 530 atcattgcgaccggtgctcgggctttgaagctggaagagtttggaatcagtggatcagat 589 Query: 188 gctgaaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcgatg 247 ||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||| Sbjct: 590 gcttcgaacatatgttatttgcgcaatcttgatgatgcggataagttagtgaatgtgatg 649 Query: 248 agctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaatgt 307 | |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| || Sbjct: 650 aaatcatgtcctggtggaaatgctgtcgtcattggtggtggctatataggaatggagtgc 709 Query: 308 gcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacactgc 367 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 710 gcagcagcattggttactaataggataaaagtaaccatggtcttccctgaaagccactgc 769 Query: 368 atgggtcggctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaa 427 |||| || ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||| Sbjct: 770 atggcccgtctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaa 829 Query: 428 ggagttacttttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaag 487 || ||||| ||| ||||||||||||||||||||| |||||||| || || ||||||||| Sbjct: 830 ggtgttacctttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaag 889 Query: 488 gtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttggt 547 |||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||| Sbjct: 890 gtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttggt 949 Query: 548 attgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcggc 607 ||||| |||||||||| || | |||||||||||||||||| |||||||| |||| || Sbjct: 950 attggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtggg 1009 Query: 608 ataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatgtt 667 ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||||| Sbjct: 1010 ataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatgtt 1069 Query: 668 gccgcgttccc 678 || || ||||| Sbjct: 1070 gctgccttccc 1080
>gb|AY106646.1| Zea mays PCO091252 mRNA sequence Length = 1867 Score = 577 bits (291), Expect = e-161 Identities = 582/678 (85%), Gaps = 7/678 (1%) Strand = Plus / Plus Query: 10 aaatggtacaaggnaacaaggtattgaacttgttcttggaacaagagtgatatctgctga 69 ||||||||||| | ||||||| |||||||||||||||||||||| |||||| |||||||| Sbjct: 358 aaatggtacaaag-aacaaggcattgaacttgttcttggaacaaaagtgatttctgctga 416 Query: 70 tgtgagacggaagacattgcttacagcaactggagaaactatcagctataagacacttat 129 |||||| || |||||||||||||||| ||||| |||||||||||||| || || || || Sbjct: 417 tgtgaggcgcaagacattgcttacaggcactggtgaaactatcagctacaaaactctaat 476 Query: 130 aattgcaacaggtgctcgggctttaaagctggaagagtttggaataagtggttcggatgc 189 ||||| ||||||||||||||||| |||||| |||| ||||||||| ||||| ||||| Sbjct: 477 tattgcgacaggtgctcgggctttgaagctgcaagaatttggaatacaaggttcagatgc 536 Query: 190 tgaaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcgatgag 249 | ||||||||||||||||||||| | || ||||||||||| || |||| || ||||| Sbjct: 537 ttcaaacatatgttatttgcgcaacatcgatgacgcggataagttggtgagtgtgatgaa 596 Query: 250 ctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaatgtgc 309 |||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 597 atcatgtcctggtggaaatgctgttgtcattggtggtggctacattggaatggagtgtgc 656 Query: 310 agcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacactgcat 369 ||| |||||||||||||| ||||| | || ||||||||||||||||| ||||||||||| Sbjct: 657 agcggcattggttactaacaagattagggtcaccatggtcttccctgagaaacactgcat 716 Query: 370 gggtcggctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaagg 429 |||||| ||||||||| ||||||||| |||| |||||||| ||||||||| |||||||| Sbjct: 717 gggtcgtctatttacaccaaaaattgcagaattttatgaaaactactacacctcgaaagg 776 Query: 430 agttacttttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaaggt 489 || || ||| |||||||||||||||||||| |||||||| || | || |||||||| Sbjct: 777 ggtcacctttgttaaaggaactgtgcttacatcctttgaaaaagatacgacggggaaggt 836 Query: 490 gacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttggtat 549 |||| | ||||| || |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 837 gactgcagtaatactcaaagatggtaggcaccttcctgctgatatggtagtagttggtat 896 Query: 550 tgggatccgtgcaaataccagcctttttgaaggtcagctgctgatg------gagaaagg 603 ||| ||||||||||| || ||||||||||||||||| ||| ||||| ||||| || Sbjct: 897 tggcatccgtgcaaacactagcctttttgaaggtcaactgatgatgtcaacagagaatgg 956 Query: 604 cggcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtga 663 || ||||| ||||| || || |||| || ||||||||||| |||||||| ||||| || Sbjct: 957 tgggataaaggtaaatggacagctgcagacaagcgacagctctgtgtatgccgttggcga 1016 Query: 664 tgttgccgcgttccccat 681 ||| |||||||||||||| Sbjct: 1017 tgtggccgcgttccccat 1034
>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full insert sequence Length = 1246 Score = 490 bits (247), Expect = e-135 Identities = 454/523 (86%) Strand = Plus / Plus Query: 156 agctggaagagtttggaataagtggttcggatgctgaaaacatatgttatttgcgcaatc 215 ||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||| Sbjct: 1 agctggaagagtttggaatcagtggatcagatgcttcgaacatatgttatttgcgcaatc 60 Query: 216 ttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaaatgctgttg 275 |||| || |||||||| |||||||||| ||||| |||||| |||||||||||||||| | Sbjct: 61 ttgatgatgcggataagttagtgaatgtgatgaaatcatgtcctggtggaaatgctgtcg 120 Query: 276 tcatcggtggtggctacataggaatggaatgtgcagcagcattggttactaataagataa 335 |||| ||||||||||| ||||||||||| || |||||||||||||||||||||| ||||| Sbjct: 121 tcattggtggtggctatataggaatggagtgcgcagcagcattggttactaataggataa 180 Query: 336 aagtaaccatggtcttccctgaaaaacactgcatgggtcggctatttacagaaaaaattg 395 |||||||||||||||||||||||| |||||||||| || ||||||||| |||||||| Sbjct: 181 aagtaaccatggtcttccctgaaagccactgcatggcccgtctatttacaccaaaaattg 240 Query: 396 ctgaatattatgaaagctactacacttcgaaaggagttacttttaccaaaggaactgtgc 455 | ||||||||||| | ||| |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 241 cagaatattatgagaactattacacttcaaaaggtgttacctttgtcaaaggaactgtgc 300 Query: 456 ttacatcatttgaaaaggactcaacagggaaggtgacttcggtaatcctaaaagatggta 515 ||||||| |||||||| || || ||||||||||||||||| |||||||| |||||||||| Sbjct: 301 ttacatcctttgaaaaagattcgacagggaaggtgacttcagtaatcctgaaagatggta 360 Query: 516 accaccttcctgctgatatggtagtagttggtattgggatccgtgcaaataccagccttt 575 | ||||||||||| |||||||| || ||||||||||| |||||||||| || | |||| Sbjct: 361 aacaccttcctgccgatatggttgtggttggtattggcatccgtgcaagcactggtcttt 420 Query: 576 ttgaaggtcagctgctgatggagaaaggcggcataaaagtaaacgggcaaatgcaaacca 635 |||||||||||||| |||||||| |||| || ||||| |||||||| |||||| ||| | Sbjct: 421 ttgaaggtcagctgttgatggagcaaggtgggataaaggtaaacggacaaatgttaacaa 480 Query: 636 gcgacagctcggtgtatgctgttggtgatgttgccgcgttccc 678 |||| | || || ||||| ||||| |||||||| || ||||| Sbjct: 481 gcgatggttctgtatatgccgttggcgatgttgctgccttccc 523
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence Length = 158050 Score = 264 bits (133), Expect = 3e-67 Identities = 199/221 (90%) Strand = Plus / Plus Query: 148 ggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttattt 207 |||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||| Sbjct: 112135 ggctttgaagctggaagagtttggaatcagtggatcagatgcttcgaacatatgttattt 112194 Query: 208 gcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaaa 267 |||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||||| Sbjct: 112195 gcgcaatcttgatgatgcggataagttagtgaatgtgatgaaatcatgtcctggtggaaa 112254 Query: 268 tgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttactaa 327 |||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 112255 tgctgtcgtcattggtggtggctatataggaatggagtgcgcagcagcattggttactaa 112314 Query: 328 taagataaaagtaaccatggtcttccctgaaaaacactgca 368 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 112315 taggataaaagtaaccatggtcttccctgaaagccactgca 112355 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 486 aggtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttg 545 |||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||| Sbjct: 113238 aggtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttg 113297 Query: 546 gtattgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcg 605 ||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| | Sbjct: 113298 gtattggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtg 113357 Query: 606 gcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatg 665 | ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||| Sbjct: 113358 ggataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatg 113417 Query: 666 ttgccgcgttccc 678 |||| || ||||| Sbjct: 113418 ttgctgccttccc 113430 Score = 143 bits (72), Expect = 9e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 245 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 304 ||||| |||||| | ||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct: 116181 atgagatcatgtcccggtggaaatgccgttgtcgtcggtggtggatacataggaatggaa 116240 Query: 305 tgtgcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacac 364 |||||||| |||||||| || || || |||||||| ||||||||||||||| |||||||| Sbjct: 116241 tgtgcagcggcattggtcacaaacaacataaaagttaccatggtcttccctaaaaaacac 116300 Query: 365 tgca 368 |||| Sbjct: 116301 tgca 116304 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Plus Query: 28 aggtattgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacatt 87 |||||||||||||||||||||||||| ||||||| | |||||||| || ||||||||| Sbjct: 111890 aggtattgaacttgttcttggaacaaaagtgataaccgctgatgtaaggatgaagacatt 111949 Query: 88 gcttacagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcg 147 ||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 111950 gcttacagccactggagaaactatcagctataagaatcttatcattgcgaccggtgctcg 112009 Query: 148 gg 149 || Sbjct: 112010 gg 112011 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 377 ctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaaggagttact 436 ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||||| ||||| Sbjct: 112497 ctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaaggtgttacc 112556 Query: 437 tttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaaggtga 491 ||| ||||||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 112557 tttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaaggtga 112611 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Plus Query: 32 attgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacattgctt 91 |||| ||||||||||||||| || ||||| |||||||||||| | | ||||||||||||| Sbjct: 115790 attgtacttgttcttggaacgagggtgatttctgctgatgtgcggcagaagacattgctt 115849 Query: 92 acagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcggg 149 ||| | | ||| ||||| ||||||||||| || ||||| |||| || |||||||||| Sbjct: 115850 acatccagtggggaaaccatcagctataaaactcttatcgttgccacgggtgctcggg 115907 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Plus Query: 389 aaaattgctgaatattatgaaagctactacacttcgaaaggagttacttt 438 ||||||||||| | |||||| ||||| ||| |||| | |||||||||||| Sbjct: 116416 aaaattgctgagttttatgagagctattacgcttcaagaggagttacttt 116465
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 264 bits (133), Expect = 3e-67 Identities = 199/221 (90%) Strand = Plus / Minus Query: 148 ggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttattt 207 |||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||| Sbjct: 29250496 ggctttgaagctggaagagtttggaatcagtggatcagatgcttcgaacatatgttattt 29250437 Query: 208 gcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaaa 267 |||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||||| Sbjct: 29250436 gcgcaatcttgatgatgcggataagttagtgaatgtgatgaaatcatgtcctggtggaaa 29250377 Query: 268 tgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttactaa 327 |||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 29250376 tgctgtcgtcattggtggtggctatataggaatggagtgcgcagcagcattggttactaa 29250317 Query: 328 taagataaaagtaaccatggtcttccctgaaaaacactgca 368 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 29250316 taggataaaagtaaccatggtcttccctgaaagccactgca 29250276 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Minus Query: 486 aggtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttg 545 |||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||| Sbjct: 29249393 aggtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttg 29249334 Query: 546 gtattgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcg 605 ||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| | Sbjct: 29249333 gtattggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtg 29249274 Query: 606 gcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatg 665 | ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||| Sbjct: 29249273 ggataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatg 29249214 Query: 666 ttgccgcgttccc 678 |||| || ||||| Sbjct: 29249213 ttgctgccttccc 29249201 Score = 143 bits (72), Expect = 9e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 245 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 304 ||||| |||||| | ||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct: 29246450 atgagatcatgtcccggtggaaatgccgttgtcgtcggtggtggatacataggaatggaa 29246391 Query: 305 tgtgcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacac 364 |||||||| |||||||| || || || |||||||| ||||||||||||||| |||||||| Sbjct: 29246390 tgtgcagcggcattggtcacaaacaacataaaagttaccatggtcttccctaaaaaacac 29246331 Query: 365 tgca 368 |||| Sbjct: 29246330 tgca 29246327 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Minus Query: 28 aggtattgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacatt 87 |||||||||||||||||||||||||| ||||||| | |||||||| || ||||||||| Sbjct: 29250741 aggtattgaacttgttcttggaacaaaagtgataaccgctgatgtaaggatgaagacatt 29250682 Query: 88 gcttacagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcg 147 ||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 29250681 gcttacagccactggagaaactatcagctataagaatcttatcattgcgaccggtgctcg 29250622 Query: 148 gg 149 || Sbjct: 29250621 gg 29250620 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 377 ctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaaggagttact 436 ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||||| ||||| Sbjct: 29250134 ctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaaggtgttacc 29250075 Query: 437 tttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaaggtga 491 ||| ||||||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 29250074 tttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaaggtga 29250020 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 32 attgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacattgctt 91 |||| ||||||||||||||| || ||||| |||||||||||| | | ||||||||||||| Sbjct: 29246841 attgtacttgttcttggaacgagggtgatttctgctgatgtgcggcagaagacattgctt 29246782 Query: 92 acagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcggg 149 ||| | | ||| ||||| ||||||||||| || ||||| |||| || |||||||||| Sbjct: 29246781 acatccagtggggaaaccatcagctataaaactcttatcgttgccacgggtgctcggg 29246724 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 389 aaaattgctgaatattatgaaagctactacacttcgaaaggagttacttt 438 ||||||||||| | |||||| ||||| ||| |||| | |||||||||||| Sbjct: 29246215 aaaattgctgagttttatgagagctattacgcttcaagaggagttacttt 29246166
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16 Length = 164373 Score = 264 bits (133), Expect = 3e-67 Identities = 199/221 (90%) Strand = Plus / Minus Query: 148 ggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttattt 207 |||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||| Sbjct: 47841 ggctttgaagctggaagagtttggaatcagtggatcagatgcttcgaacatatgttattt 47782 Query: 208 gcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaaa 267 |||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||||| Sbjct: 47781 gcgcaatcttgatgatgcggataagttagtgaatgtgatgaaatcatgtcctggtggaaa 47722 Query: 268 tgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttactaa 327 |||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 47721 tgctgtcgtcattggtggtggctatataggaatggagtgcgcagcagcattggttactaa 47662 Query: 328 taagataaaagtaaccatggtcttccctgaaaaacactgca 368 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 47661 taggataaaagtaaccatggtcttccctgaaagccactgca 47621 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Minus Query: 486 aggtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttg 545 |||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||| Sbjct: 46738 aggtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttg 46679 Query: 546 gtattgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcg 605 ||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| | Sbjct: 46678 gtattggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtg 46619 Query: 606 gcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatg 665 | ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||| Sbjct: 46618 ggataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatg 46559 Query: 666 ttgccgcgttccc 678 |||| || ||||| Sbjct: 46558 ttgctgccttccc 46546 Score = 143 bits (72), Expect = 9e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 245 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 304 ||||| |||||| | ||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct: 43795 atgagatcatgtcccggtggaaatgccgttgtcgtcggtggtggatacataggaatggaa 43736 Query: 305 tgtgcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacac 364 |||||||| |||||||| || || || |||||||| ||||||||||||||| |||||||| Sbjct: 43735 tgtgcagcggcattggtcacaaacaacataaaagttaccatggtcttccctaaaaaacac 43676 Query: 365 tgca 368 |||| Sbjct: 43675 tgca 43672 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Minus Query: 28 aggtattgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacatt 87 |||||||||||||||||||||||||| ||||||| | |||||||| || ||||||||| Sbjct: 48086 aggtattgaacttgttcttggaacaaaagtgataaccgctgatgtaaggatgaagacatt 48027 Query: 88 gcttacagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcg 147 ||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 48026 gcttacagccactggagaaactatcagctataagaatcttatcattgcgaccggtgctcg 47967 Query: 148 gg 149 || Sbjct: 47966 gg 47965 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 377 ctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaaggagttact 436 ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||||| ||||| Sbjct: 47479 ctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaaggtgttacc 47420 Query: 437 tttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaaggtga 491 ||| ||||||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 47419 tttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaaggtga 47365 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 32 attgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacattgctt 91 |||| ||||||||||||||| || ||||| |||||||||||| | | ||||||||||||| Sbjct: 44186 attgtacttgttcttggaacgagggtgatttctgctgatgtgcggcagaagacattgctt 44127 Query: 92 acagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcggg 149 ||| | | ||| ||||| ||||||||||| || ||||| |||| || |||||||||| Sbjct: 44126 acatccagtggggaaaccatcagctataaaactcttatcgttgccacgggtgctcggg 44069 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 389 aaaattgctgaatattatgaaagctactacacttcgaaaggagttacttt 438 ||||||||||| | |||||| ||||| ||| |||| | |||||||||||| Sbjct: 43560 aaaattgctgagttttatgagagctattacgcttcaagaggagttacttt 43511
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0680A05 Length = 168092 Score = 264 bits (133), Expect = 3e-67 Identities = 199/221 (90%) Strand = Plus / Minus Query: 148 ggctttaaagctggaagagtttggaataagtggttcggatgctgaaaacatatgttattt 207 |||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||| Sbjct: 140464 ggctttgaagctggaagagtttggaatcagtggatcagatgcttcgaacatatgttattt 140405 Query: 208 gcgcaatcttgaagacgcggataaattagtgaatgcgatgagctcatgttctggtggaaa 267 |||||||||||| || |||||||| |||||||||| ||||| |||||| |||||||||| Sbjct: 140404 gcgcaatcttgatgatgcggataagttagtgaatgtgatgaaatcatgtcctggtggaaa 140345 Query: 268 tgctgttgtcatcggtggtggctacataggaatggaatgtgcagcagcattggttactaa 327 |||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 140344 tgctgtcgtcattggtggtggctatataggaatggagtgcgcagcagcattggttactaa 140285 Query: 328 taagataaaagtaaccatggtcttccctgaaaaacactgca 368 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 140284 taggataaaagtaaccatggtcttccctgaaagccactgca 140244 Score = 145 bits (73), Expect = 2e-31 Identities = 163/193 (84%) Strand = Plus / Minus Query: 486 aggtgacttcggtaatcctaaaagatggtaaccaccttcctgctgatatggtagtagttg 545 |||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||| Sbjct: 139361 aggtgacttcagtaatcctgaaagatggtaaacaccttcctgccgatatggttgtggttg 139302 Query: 546 gtattgggatccgtgcaaataccagcctttttgaaggtcagctgctgatggagaaaggcg 605 ||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| | Sbjct: 139301 gtattggcatccgtgcaagcactggtctttttgaaggtcagctgttgatggagcaaggtg 139242 Query: 606 gcataaaagtaaacgggcaaatgcaaaccagcgacagctcggtgtatgctgttggtgatg 665 | ||||| |||||||| |||||| ||| ||||| | || || ||||| ||||| |||| Sbjct: 139241 ggataaaggtaaacggacaaatgttaacaagcgatggttctgtatatgccgttggcgatg 139182 Query: 666 ttgccgcgttccc 678 |||| || ||||| Sbjct: 139181 ttgctgccttccc 139169 Score = 143 bits (72), Expect = 9e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 245 atgagctcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaa 304 ||||| |||||| | ||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct: 136418 atgagatcatgtcccggtggaaatgccgttgtcgtcggtggtggatacataggaatggaa 136359 Query: 305 tgtgcagcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacac 364 |||||||| |||||||| || || || |||||||| ||||||||||||||| |||||||| Sbjct: 136358 tgtgcagcggcattggtcacaaacaacataaaagttaccatggtcttccctaaaaaacac 136299 Query: 365 tgca 368 |||| Sbjct: 136298 tgca 136295 Score = 139 bits (70), Expect = 1e-29 Identities = 109/122 (89%) Strand = Plus / Minus Query: 28 aggtattgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacatt 87 |||||||||||||||||||||||||| ||||||| | |||||||| || ||||||||| Sbjct: 140709 aggtattgaacttgttcttggaacaaaagtgataaccgctgatgtaaggatgaagacatt 140650 Query: 88 gcttacagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcg 147 ||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 140649 gcttacagccactggagaaactatcagctataagaatcttatcattgcgaccggtgctcg 140590 Query: 148 gg 149 || Sbjct: 140589 gg 140588 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 377 ctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaaggagttact 436 ||||||||| ||||||||| ||||||||||| | ||| |||||||| ||||| ||||| Sbjct: 140102 ctatttacaccaaaaattgcagaatattatgagaactattacacttcaaaaggtgttacc 140043 Query: 437 tttaccaaaggaactgtgcttacatcatttgaaaaggactcaacagggaaggtga 491 ||| ||||||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 140042 tttgtcaaaggaactgtgcttacatcctttgaaaaagattcgacagggaaggtga 139988 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 32 attgaacttgttcttggaacaagagtgatatctgctgatgtgagacggaagacattgctt 91 |||| ||||||||||||||| || ||||| |||||||||||| | | ||||||||||||| Sbjct: 136809 attgtacttgttcttggaacgagggtgatttctgctgatgtgcggcagaagacattgctt 136750 Query: 92 acagcaactggagaaactatcagctataagacacttataattgcaacaggtgctcggg 149 ||| | | ||| ||||| ||||||||||| || ||||| |||| || |||||||||| Sbjct: 136749 acatccagtggggaaaccatcagctataaaactcttatcgttgccacgggtgctcggg 136692 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 389 aaaattgctgaatattatgaaagctactacacttcgaaaggagttacttt 438 ||||||||||| | |||||| ||||| ||| |||| | |||||||||||| Sbjct: 136183 aaaattgctgagttttatgagagctattacgcttcaagaggagttacttt 136134
>ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 254 bits (128), Expect = 3e-64 Identities = 354/428 (82%), Gaps = 1/428 (0%) Strand = Plus / Plus Query: 11 aatggtacaaggnaacaaggtattgaacttgttcttggaacaagagtgatatctgctgat 70 |||||||||| | |||| || |||| ||||||||||||||| || ||||| ||||||||| Sbjct: 242 aatggtacaacg-aacacggcattgtacttgttcttggaacgagggtgatttctgctgat 300 Query: 71 gtgagacggaagacattgcttacagcaactggagaaactatcagctataagacacttata 130 ||| | | |||||||||||||||| | | ||| ||||| ||||||||||| || ||||| Sbjct: 301 gtgcggcagaagacattgcttacatccagtggggaaaccatcagctataaaactcttatc 360 Query: 131 attgcaacaggtgctcgggctttaaagctggaagagtttggaataagtggttcggatgct 190 |||| || ||||||||||| | ||||||||||| |||||| | || ||||| ||||| Sbjct: 361 gttgccacgggtgctcgggccgtgaagctggaagaatttggagtgagcggttcagatgcg 420 Query: 191 gaaaacatatgttatttgcgcaatcttgaagacgcggataaattagtgaatgcgatgagc 250 ||| | || ||| |||||||| | || || || || |||||||| || ||||| Sbjct: 421 aggaacgtctgctatctgcgcaatgtggaggatgcagacaaattagtcggtgtaatgaga 480 Query: 251 tcatgttctggtggaaatgctgttgtcatcggtggtggctacataggaatggaatgtgca 310 |||||| | ||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct: 481 tcatgtcccggtggaaatgccgttgtcgtcggtggtggatacataggaatggaatgtgca 540 Query: 311 gcagcattggttactaataagataaaagtaaccatggtcttccctgaaaaacactgcatg 370 || |||||||| || || || |||||||| ||||||||||||||| |||||||||||||| Sbjct: 541 gcggcattggtcacaaacaacataaaagttaccatggtcttccctaaaaaacactgcatg 600 Query: 371 ggtcggctatttacagaaaaaattgctgaatattatgaaagctactacacttcgaaagga 430 ||||| || |||||| ||||||||||| | |||||| ||||| ||| |||| | |||| Sbjct: 601 ggtcgtctttttacaccgaaaattgctgagttttatgagagctattacgcttcaagagga 660 Query: 431 gttacttt 438 |||||||| Sbjct: 661 gttacttt 668
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 329 aagataaaagtaaccatggtctt 351 ||||||||||||||||||||||| Sbjct: 3310 aagataaaagtaaccatggtctt 3332
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 263 ggaaatgctgttgtcatcggtggtgg 288 |||||||| ||||||||||||||||| Sbjct: 1398867 ggaaatgcggttgtcatcggtggtgg 1398842
>ref|NM_113698.2| Arabidopsis thaliana disulfide oxidoreductase/ oxidoreductase AT3G27820 mRNA, complete cds Length = 1768 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 131 attgcaacaggtgctcgggctttaaagctggaagagtttgg 171 |||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 481 attgcaacaggtgcccgggcgttgaagcttgaagaatttgg 521
>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji, complete sequence; and helitron Mo17_14594, complete sequence Length = 57607 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 412 ctactacacttcgaaaggagttacttttaccaaaggaactg 452 ||||||| | ||||||||||| ||||||| |||||||||| Sbjct: 54252 ctactacgcatcgaaaggagtcacttttataaaaggaactg 54292
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 ttacagaaaaaattgctgaat 401 ||||||||||||||||||||| Sbjct: 255510 ttacagaaaaaattgctgaat 255530
>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of the DAB1 gene for disabled homolog 1 (Drosophila), complete sequence Length = 134011 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 tggtggaaatgctgttgtcat 279 ||||||||||||||||||||| Sbjct: 15263 tggtggaaatgctgttgtcat 15283
>gb|AY133800.1| Arabidopsis thaliana clone U10218 putative monodehydroascorbate reductase (At3g27820) mRNA, complete cds Length = 1498 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 131 attgcaacaggtgctcgggctttaaagctggaagagtttgg 171 |||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 355 attgcaacaggtgcccgggcgttgaagcttgaagaatttgg 395
>gb|AY039980.1| Arabidopsis thaliana putative monodehydroascorbate reductase (At3g27820) mRNA, complete cds Length = 1723 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 131 attgcaacaggtgctcgggctttaaagctggaagagtttgg 171 |||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 452 attgcaacaggtgcccgggcgttgaagcttgaagaatttgg 492
>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence Length = 135294 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 ttgtcatcggtggtggctacatagg 297 ||||||||||||||||||| ||||| Sbjct: 4892 ttgtcatcggtggtggctatatagg 4868
>gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3p, complete sequence Length = 171716 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 aaggactcaacagggaaggtg 490 ||||||||||||||||||||| Sbjct: 58566 aaggactcaacagggaaggtg 58586
>gb|AF176315.2|AF176315 Homo sapiens chromosome 3 clone RP11-83M12 map 3p, complete sequence Length = 170755 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 aaggactcaacagggaaggtg 490 ||||||||||||||||||||| Sbjct: 147357 aaggactcaacagggaaggtg 147377
>gb|AF025458.1| Caenorhabditis elegans cosmid C01B12, complete sequence Length = 22973 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcggctatttacagaaaaaa 392 |||||||||||||||||||| Sbjct: 10682 tcggctatttacagaaaaaa 10701
>gb|AC160470.3| Mus musculus chromosome 3, clone RP24-74B11, complete sequence Length = 204941 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 tttacagaaaaaattgctgaatat 403 |||||||||||||||| ||||||| Sbjct: 147414 tttacagaaaaaattgatgaatat 147391
>gb|AC139213.11| Mus musculus chromosome 7, clone RP23-341H2, complete sequence Length = 189709 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 acatcatttgaaaaggactc 477 |||||||||||||||||||| Sbjct: 188005 acatcatttgaaaaggactc 187986
>gb|AC122836.4| Mus musculus BAC clone RP23-188B13 from 7, complete sequence Length = 222390 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aagtggttcggatgctgaaa 194 |||||||||||||||||||| Sbjct: 152050 aagtggttcggatgctgaaa 152069
>ref|NM_001014137.2| Rattus norvegicus similar to RIKEN cDNA 4933406L09 (LOC361016), mRNA Length = 2306 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caactggagaaactatcagc 115 |||||||||||||||||||| Sbjct: 1784 caactggagaaactatcagc 1803
>emb|AL109613.11|HS1033H22 Human DNA sequence from clone RP5-1033H22 on chromosome 1p21.2-22.2 Contains the 3' end of the gene for a novel formin binding protein 1 family protein, the 3' end of the BCAR3 gene for breast cancer anti-estrogen resistance 3 and a novel gene, complete sequence Length = 142018 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tgcttacagcaactggagaa 106 |||||||||||||||||||| Sbjct: 60079 tgcttacagcaactggagaa 60098
>gb|BC086559.1| Rattus norvegicus similar to RIKEN cDNA 4933406L09, mRNA (cDNA clone IMAGE:7301570), complete cds Length = 1305 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caactggagaaactatcagc 115 |||||||||||||||||||| Sbjct: 481 caactggagaaactatcagc 500
>gb|BC098040.1| Rattus norvegicus similar to RIKEN cDNA 4933406L09, mRNA (cDNA clone MGC:116196 IMAGE:7456960), complete cds Length = 2306 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caactggagaaactatcagc 115 |||||||||||||||||||| Sbjct: 1784 caactggagaaactatcagc 1803
>gb|AC102076.9| Mus musculus chromosome 7, clone RP23-401P12, complete sequence Length = 199219 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 aagtggttcggatgctgaaa 194 |||||||||||||||||||| Sbjct: 137125 aagtggttcggatgctgaaa 137106
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 tggtggaaatgctgttgtcatcgg 282 ||||||||||||||||||| |||| Sbjct: 772618 tggtggaaatgctgttgtcctcgg 772641
>gb|AC157607.4| Mus musculus chromosome 1, clone RP23-401G11, complete sequence Length = 200421 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 648 tgtatgctgttggtgatgtt 667 |||||||||||||||||||| Sbjct: 146986 tgtatgctgttggtgatgtt 147005
>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence Length = 160310 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ttacagaaaaaattgctgaa 400 |||||||||||||||||||| Sbjct: 72602 ttacagaaaaaattgctgaa 72621
>emb|CR523617.1| Gallus gallus finished cDNA, clone ChEST255o16 Length = 1955 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gggctttaaagctggaagag 166 |||||||||||||||||||| Sbjct: 1796 gggctttaaagctggaagag 1815
>emb|CR407082.1| Gallus gallus finished cDNA, clone ChEST749n5 Length = 1033 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gggctttaaagctggaagag 166 |||||||||||||||||||| Sbjct: 879 gggctttaaagctggaagag 898
>gb|AC016967.24| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140971 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ttacagaaaaaattgctgaa 400 |||||||||||||||||||| Sbjct: 40975 ttacagaaaaaattgctgaa 40994
>gb|AC155944.3| Mus musculus 6 BAC RP24-493P12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 137474 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 gaactgtgcttacatcattt 466 |||||||||||||||||||| Sbjct: 90838 gaactgtgcttacatcattt 90857
>gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, complete sequence Length = 233425 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 tttacagaaaaaattgctgaatat 403 |||||||||||||||| ||||||| Sbjct: 232334 tttacagaaaaaattgatgaatat 232357
>dbj|AP001085.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-632K5, complete sequence Length = 175747 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ggctatttacagaaaaaatt 394 |||||||||||||||||||| Sbjct: 170447 ggctatttacagaaaaaatt 170466
>gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complete sequence Length = 187438 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ctgaaaacatatgttatttg 208 |||||||||||||||||||| Sbjct: 166258 ctgaaaacatatgttatttg 166277
>gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, complete sequence Length = 199087 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 tttacagaaaaaattgctgaatat 403 |||||||||||||||| ||||||| Sbjct: 95341 tttacagaaaaaattgatgaatat 95364
>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete sequence Length = 176724 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ctttaaagctggaagagttt 169 |||||||||||||||||||| Sbjct: 135180 ctttaaagctggaagagttt 135161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,420,630 Number of Sequences: 3902068 Number of extensions: 6420630 Number of successful extensions: 121247 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121035 Number of HSP's gapped (non-prelim): 204 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
