| Clone Name | bags22p05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191046.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1443 Score = 757 bits (382), Expect = 0.0 Identities = 517/562 (91%) Strand = Plus / Plus Query: 35 ggcgcgtggccgtcggcgcccgcgccgctcagggtctacgtgtacgagatgccgcgcaag 94 ||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| ||| | Sbjct: 310 ggcgcctggccggcggccccggcgcctctcagggtctacgtgtacgagatgccgagcagg 369 Query: 95 ttcacctacgatctgctcaggctcttcagggactcgtaccgcgacaccaccaacctcacc 154 ||||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||| Sbjct: 370 ttcacgtacgatctgctgcggctgttcagggactcgtaccgcgagacctccaacctgacc 429 Query: 155 tccaacgggagccccgtgcacaggctcatcgagcagcattctattgactactggctgtgg 214 ||||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 430 tccaatgggagccccgtgcaccggctcgtcgagcagcattctattgactattggctgtgg 489 Query: 215 gctgatctaattgctcctgaatcacaaagacttctgaagaatgttatcagggttgagcgg 274 |||||||| ||||| || ||||||||||||||| |||||||||||||||||||| |||| Sbjct: 490 gctgatctcattgcgcccgaatcacaaagacttttgaagaatgttatcagggttcggcgg 549 Query: 275 caagaagaagcagacattttctacgttccatttttcacaacaatcagttacttcttgctg 334 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 550 caagaagaagcagacatcttctacgtaccattcttcacaacaatcagttacttcttgctg 609 Query: 335 gagaaacaagaatgcaaggcactttatagggaagctttgaagtgggtgactgatcaacct 394 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 610 gagaaacaagaatgcaaggcactttatagggaagctttgaaatgggttactgatcaacct 669 Query: 395 gcttggcaacgttcagaaggcagagatcatgttattcctgttcatcacccatggtctttt 454 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 670 gcttggcaacgttcagaaggcagagatcatgtaattcccgttcatcacccatggtcgttt 729 Query: 455 aagtcagtccgaagatttgttaagaaagcaatatggcttctacctgatatggattctact 514 |||||||| || |||||||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 730 aagtcagttcggagatttgtgaagaaggctatatggcttctgcctgacatggattctact 789 Query: 515 gggaactggtataaacctgggcaagtttatcttgaaaaggatgttatccttccatatgtc 574 ||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||| Sbjct: 790 gggaactggtataaaccagggcaagtttatttggaaaaggatgtcatccttccatatgtt 849 Query: 575 ccaaatgttgacctttgtgatt 596 ||||||||||| |||||||||| Sbjct: 850 ccaaatgttgatctttgtgatt 871
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 276 bits (139), Expect = 8e-71 Identities = 169/179 (94%) Strand = Plus / Minus Query: 187 gcagcattctattgactactggctgtgggctgatctaattgctcctgaatcacaaagact 246 |||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 34481831 gcagcattctattgactattggctgtgggctgatctcattgcgcccgaatcacaaagact 34481772 Query: 247 tctgaagaatgttatcagggttgagcggcaagaagaagcagacattttctacgttccatt 306 | |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| Sbjct: 34481771 tttgaagaatgttatcagggttcggcggcaagaagaagcagacatcttctacgtaccatt 34481712 Query: 307 tttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34481711 cttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 34481653 Score = 228 bits (115), Expect = 2e-56 Identities = 151/163 (92%) Strand = Plus / Minus Query: 364 ggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcagaaggcagagatca 423 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34481216 ggaagctttgaaatgggttactgatcaacctgcttggcaacgttcagaaggcagagatca 34481157 Query: 424 tgttattcctgttcatcacccatggtcttttaagtcagtccgaagatttgttaagaaagc 483 ||| ||||| ||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 34481156 tgtaattcccgttcatcacccatggtcgtttaagtcagttcggagatttgtgaagaaggc 34481097 Query: 484 aatatggcttctacctgatatggattctactgggaactggtat 526 ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 34481096 tatatggcttctgcctgacatggattctactgggaactggtat 34481054 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Minus Query: 35 ggcgcgtggccgtcggcgcccgcgccgctcagggtctacgtgtacgagatgccgcgcaag 94 ||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| ||| | Sbjct: 34482747 ggcgcctggccggcggccccggcgcctctcagggtctacgtgtacgagatgccgagcagg 34482688 Query: 95 ttcacctacgatctgctcaggctcttcagggactcgtaccgcgacaccaccaacctcacc 154 ||||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||| Sbjct: 34482687 ttcacgtacgatctgctgcggctgttcagggactcgtaccgcgagacctccaacctgacc 34482628 Query: 155 tccaacgggagccccgtgcacaggctcatcgagcag 190 ||||| ||||||||||||||| ||||| |||||||| Sbjct: 34482627 tccaatgggagccccgtgcaccggctcgtcgagcag 34482592 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 522 ggtataaacctgggcaagtttatcttgaaaaggatgttatccttccatatgtcccaaatg 581 |||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||| Sbjct: 34480969 ggtataaaccagggcaagtttatttggaaaaggatgtcatccttccatatgttccaaatg 34480910 Query: 582 ttgacctttgtgatt 596 |||| |||||||||| Sbjct: 34480909 ttgatctttgtgatt 34480895
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 276 bits (139), Expect = 8e-71 Identities = 169/179 (94%) Strand = Plus / Minus Query: 187 gcagcattctattgactactggctgtgggctgatctaattgctcctgaatcacaaagact 246 |||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 164175 gcagcattctattgactattggctgtgggctgatctcattgcgcccgaatcacaaagact 164116 Query: 247 tctgaagaatgttatcagggttgagcggcaagaagaagcagacattttctacgttccatt 306 | |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| Sbjct: 164115 tttgaagaatgttatcagggttcggcggcaagaagaagcagacatcttctacgtaccatt 164056 Query: 307 tttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164055 cttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 163997 Score = 228 bits (115), Expect = 2e-56 Identities = 151/163 (92%) Strand = Plus / Minus Query: 364 ggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcagaaggcagagatca 423 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 163560 ggaagctttgaaatgggttactgatcaacctgcttggcaacgttcagaaggcagagatca 163501 Query: 424 tgttattcctgttcatcacccatggtcttttaagtcagtccgaagatttgttaagaaagc 483 ||| ||||| ||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 163500 tgtaattcccgttcatcacccatggtcgtttaagtcagttcggagatttgtgaagaaggc 163441 Query: 484 aatatggcttctacctgatatggattctactgggaactggtat 526 ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 163440 tatatggcttctgcctgacatggattctactgggaactggtat 163398 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Minus Query: 35 ggcgcgtggccgtcggcgcccgcgccgctcagggtctacgtgtacgagatgccgcgcaag 94 ||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| ||| | Sbjct: 165091 ggcgcctggccggcggccccggcgcctctcagggtctacgtgtacgagatgccgagcagg 165032 Query: 95 ttcacctacgatctgctcaggctcttcagggactcgtaccgcgacaccaccaacctcacc 154 ||||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||| Sbjct: 165031 ttcacgtacgatctgctgcggctgttcagggactcgtaccgcgagacctccaacctgacc 164972 Query: 155 tccaacgggagccccgtgcacaggctcatcgagcag 190 ||||| ||||||||||||||| ||||| |||||||| Sbjct: 164971 tccaatgggagccccgtgcaccggctcgtcgagcag 164936 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 522 ggtataaacctgggcaagtttatcttgaaaaggatgttatccttccatatgtcccaaatg 581 |||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||| Sbjct: 163313 ggtataaaccagggcaagtttatttggaaaaggatgtcatccttccatatgttccaaatg 163254 Query: 582 ttgacctttgtgatt 596 |||| |||||||||| Sbjct: 163253 ttgatctttgtgatt 163239
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 276 bits (139), Expect = 8e-71 Identities = 169/179 (94%) Strand = Plus / Minus Query: 187 gcagcattctattgactactggctgtgggctgatctaattgctcctgaatcacaaagact 246 |||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 57550 gcagcattctattgactattggctgtgggctgatctcattgcgcccgaatcacaaagact 57491 Query: 247 tctgaagaatgttatcagggttgagcggcaagaagaagcagacattttctacgttccatt 306 | |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| Sbjct: 57490 tttgaagaatgttatcagggttcggcggcaagaagaagcagacatcttctacgtaccatt 57431 Query: 307 tttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57430 cttcacaacaatcagttacttcttgctggagaaacaagaatgcaaggcactttataggg 57372 Score = 228 bits (115), Expect = 2e-56 Identities = 151/163 (92%) Strand = Plus / Minus Query: 364 ggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcagaaggcagagatca 423 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 56935 ggaagctttgaaatgggttactgatcaacctgcttggcaacgttcagaaggcagagatca 56876 Query: 424 tgttattcctgttcatcacccatggtcttttaagtcagtccgaagatttgttaagaaagc 483 ||| ||||| ||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 56875 tgtaattcccgttcatcacccatggtcgtttaagtcagttcggagatttgtgaagaaggc 56816 Query: 484 aatatggcttctacctgatatggattctactgggaactggtat 526 ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 56815 tatatggcttctgcctgacatggattctactgggaactggtat 56773 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Minus Query: 35 ggcgcgtggccgtcggcgcccgcgccgctcagggtctacgtgtacgagatgccgcgcaag 94 ||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| ||| | Sbjct: 58466 ggcgcctggccggcggccccggcgcctctcagggtctacgtgtacgagatgccgagcagg 58407 Query: 95 ttcacctacgatctgctcaggctcttcagggactcgtaccgcgacaccaccaacctcacc 154 ||||| ||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||| Sbjct: 58406 ttcacgtacgatctgctgcggctgttcagggactcgtaccgcgagacctccaacctgacc 58347 Query: 155 tccaacgggagccccgtgcacaggctcatcgagcag 190 ||||| ||||||||||||||| ||||| |||||||| Sbjct: 58346 tccaatgggagccccgtgcaccggctcgtcgagcag 58311 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 522 ggtataaacctgggcaagtttatcttgaaaaggatgttatccttccatatgtcccaaatg 581 |||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||| Sbjct: 56688 ggtataaaccagggcaagtttatttggaaaaggatgtcatccttccatatgttccaaatg 56629 Query: 582 ttgacctttgtgatt 596 |||| |||||||||| Sbjct: 56628 ttgatctttgtgatt 56614
>ref|NM_121695.1| Arabidopsis thaliana catalytic AT5G16890 mRNA, complete cds Length = 1747 Score = 143 bits (72), Expect = 8e-31 Identities = 207/252 (82%) Strand = Plus / Plus Query: 291 ttttctacgttccatttttcacaacaatcagttacttcttgctggagaaacaagaatgca 350 ||||||| ||||| |||||||| |||||||| | |||||| ||||||| || |||||| Sbjct: 616 ttttctatgttccgtttttcactacaatcagctttttcttgttggagaagcagcaatgca 675 Query: 351 aggcactttatagggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcag 410 | ||||| ||||||||||||||||||||||| |||||||| ||||||||| | | || | Sbjct: 676 aagcactctatagggaagctttgaagtgggtcactgatcagcctgcttggaagaggtccg 735 Query: 411 aaggcagagatcatgttattcctgttcatcacccatggtcttttaagtcagtccgaagat 470 | || || ||||| | ||||| ||||||| || ||||| || ||||| ||||| | || Sbjct: 736 agggaagggatcacatatttcctattcatcatccttggtccttcaagtctgtccgcaaat 795 Query: 471 ttgttaagaaagcaatatggcttctacctgatatggattctactgggaactggtataaac 530 |||| || || ||||| |||||| |||| |||||||| || ||||| || |||||||| | Sbjct: 796 ttgtgaaaaacgcaatctggcttttaccagatatggactccactggcaattggtataagc 855 Query: 531 ctgggcaagttt 542 |||||||||||| Sbjct: 856 ctgggcaagttt 867 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 182 atcgagcagcattctattgactactggctgtgggctgatctaattgctcctgaatc 237 ||||| ||||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct: 507 atcgaacagcattctattgactattggctttgggctgatctgatatctcctgaatc 562
>gb|AY142556.1| Arabidopsis thaliana unknown protein (At5g16890) mRNA, complete cds Length = 1567 Score = 143 bits (72), Expect = 8e-31 Identities = 207/252 (82%) Strand = Plus / Plus Query: 291 ttttctacgttccatttttcacaacaatcagttacttcttgctggagaaacaagaatgca 350 ||||||| ||||| |||||||| |||||||| | |||||| ||||||| || |||||| Sbjct: 581 ttttctatgttccgtttttcactacaatcagctttttcttgttggagaagcagcaatgca 640 Query: 351 aggcactttatagggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcag 410 | ||||| ||||||||||||||||||||||| |||||||| ||||||||| | | || | Sbjct: 641 aagcactctatagggaagctttgaagtgggtcactgatcagcctgcttggaagaggtccg 700 Query: 411 aaggcagagatcatgttattcctgttcatcacccatggtcttttaagtcagtccgaagat 470 | || || ||||| | ||||| ||||||| || ||||| || ||||| ||||| | || Sbjct: 701 agggaagggatcacatatttcctattcatcatccttggtccttcaagtctgtccgcaaat 760 Query: 471 ttgttaagaaagcaatatggcttctacctgatatggattctactgggaactggtataaac 530 |||| || || ||||| |||||| |||| |||||||| || ||||| || |||||||| | Sbjct: 761 ttgtgaaaaacgcaatctggcttttaccagatatggactccactggcaattggtataagc 820 Query: 531 ctgggcaagttt 542 |||||||||||| Sbjct: 821 ctgggcaagttt 832 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 182 atcgagcagcattctattgactactggctgtgggctgatctaattgctcctgaatc 237 ||||| ||||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct: 472 atcgaacagcattctattgactattggctttgggctgatctgatatctcctgaatc 527
>gb|AY056239.1| Arabidopsis thaliana unknown protein (At5g16890) mRNA, complete cds Length = 1766 Score = 143 bits (72), Expect = 8e-31 Identities = 207/252 (82%) Strand = Plus / Plus Query: 291 ttttctacgttccatttttcacaacaatcagttacttcttgctggagaaacaagaatgca 350 ||||||| ||||| |||||||| |||||||| | |||||| ||||||| || |||||| Sbjct: 618 ttttctatgttccgtttttcactacaatcagctttttcttgttggagaagcagcaatgca 677 Query: 351 aggcactttatagggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcag 410 | ||||| ||||||||||||||||||||||| |||||||| ||||||||| | | || | Sbjct: 678 aagcactctatagggaagctttgaagtgggtcactgatcagcctgcttggaagaggtccg 737 Query: 411 aaggcagagatcatgttattcctgttcatcacccatggtcttttaagtcagtccgaagat 470 | || || ||||| | ||||| ||||||| || ||||| || ||||| ||||| | || Sbjct: 738 agggaagggatcacatatttcctattcatcatccttggtccttcaagtctgtccgcaaat 797 Query: 471 ttgttaagaaagcaatatggcttctacctgatatggattctactgggaactggtataaac 530 |||| || || ||||| |||||| |||| |||||||| || ||||| || |||||||| | Sbjct: 798 ttgtgaaaaacgcaatctggcttttaccagatatggactccactggcaattggtataagc 857 Query: 531 ctgggcaagttt 542 |||||||||||| Sbjct: 858 ctgggcaagttt 869 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 182 atcgagcagcattctattgactactggctgtgggctgatctaattgctcctgaatc 237 ||||| ||||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct: 509 atcgaacagcattctattgactattggctttgggctgatctgatatctcctgaatc 564
>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project) Length = 98101 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 364 ggaagctttgaagtgggtgactgatcaacctgcttggcaacgttcagaaggcagagatca 423 |||||||||||||||||| |||||||| ||||||||| | | || || || || ||||| Sbjct: 9952 ggaagctttgaagtgggtcactgatcagcctgcttggaagaggtccgagggaagggatca 10011 Query: 424 tgttattcctgttcatcacccatggtcttttaagtcagtccgaagatttgttaagaaagc 483 | ||||| ||||||| || ||||| || ||||| ||||| | |||||| || || || Sbjct: 10012 catatttcctattcatcatccttggtccttcaagtctgtccgcaaatttgtgaaaaacgc 10071 Query: 484 aatatggcttctacctgatatggattctactgg 516 ||| |||||| |||| |||||||| || ||||| Sbjct: 10072 aatctggcttttaccagatatggactccactgg 10104 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 187 gcagcattctattgactactggctgtgggctgatctaattgctcctgaatc 237 |||||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct: 9431 gcagcattctattgactattggctttgggctgatctgatatctcctgaatc 9481
>emb|BX830436.1|CNS0A292 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1652 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 455 aagtcagtccgaagatttgttaagaaagcaatatggcttctacctgatatggattctact 514 ||||| ||||| | |||||| || || ||||| |||||| |||| |||||||| || ||| Sbjct: 708 aagtctgtccgcaaatttgtgaaaaacgcaatctggcttttaccagatatggactccact 767 Query: 515 gggaactggtataaacctgggcaagt 540 || || |||||||| ||||||||||| Sbjct: 768 ggcaattggtataagcctgggcaagt 793
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ctgatcaacctgcttggcaacg 405 |||||||||||||||||||||| Sbjct: 3368767 ctgatcaacctgcttggcaacg 3368746
>ref|XM_548077.2| PREDICTED: Canis familiaris similar to Interferon-induced 35 kDa protein (IFP 35) (LOC490954), mRNA Length = 1183 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 406 ttcagaaggcagagatcatgtt 427 |||||||||||||||||||||| Sbjct: 828 ttcagaaggcagagatcatgtt 849
>dbj|AP003057.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-382M14, complete sequences Length = 190462 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 479 aaagcaatatggcttctacctg 500 |||||||||||||||||||||| Sbjct: 109699 aaagcaatatggcttctacctg 109720
>gb|AC027607.7| Homo sapiens BAC clone RP11-36B15 from 4, complete sequence Length = 161070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atagggaagctttgaagtggg 380 ||||||||||||||||||||| Sbjct: 136532 atagggaagctttgaagtggg 136552
>gb|AY052369.1| Homo sapiens PP2A B56 gamma gene, complete cds, alternative splice products Length = 121028 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 tataaacctgggcaagtttat 544 ||||||||||||||||||||| Sbjct: 106306 tataaacctgggcaagtttat 106326
>gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169393 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 104 gatctgctcaggctcttcagggact 128 ||||| ||||||||||||||||||| Sbjct: 15448 gatcttctcaggctcttcagggact 15472
>emb|AL118558.6|CNS01DRV Human chromosome 14 DNA sequence BAC R-1017G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194871 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 tataaacctgggcaagtttat 544 ||||||||||||||||||||| Sbjct: 41534 tataaacctgggcaagtttat 41554
>gb|AC153951.3| Mus musculus 10 BAC RP24-480P16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176067 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 104 gatctgctcaggctcttcagggact 128 ||||| ||||||||||||||||||| Sbjct: 110687 gatcttctcaggctcttcagggact 110711
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tataaacctgggcaagttta 543 |||||||||||||||||||| Sbjct: 2175568 tataaacctgggcaagttta 2175587
>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone P0038B07, complete sequence Length = 149697 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cgtggccgtcggcgcccgcgccgc 62 |||||||| ||||||||||||||| Sbjct: 119945 cgtggccggcggcgcccgcgccgc 119968
>ref|XM_602388.2| PREDICTED: Bos taurus similar to Brain-specific angiogenesis inhibitor 1 precursor (LOC524070), mRNA Length = 2055 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cacctccaacgggagccccg 170 |||||||||||||||||||| Sbjct: 1527 cacctccaacgggagccccg 1508
>ref|XM_322728.1| Neurospora crassa OR74A hypothetical protein (NCU03471.1) partial mRNA Length = 1710 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 acaccaccaacctcacctcc 157 |||||||||||||||||||| Sbjct: 896 acaccaccaacctcacctcc 915
>ref|XM_951267.1| Neurospora crassa OR74A hypothetical protein (NCU03471.1) partial mRNA Length = 1710 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 acaccaccaacctcacctcc 157 |||||||||||||||||||| Sbjct: 896 acaccaccaacctcacctcc 915
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgtcggcgcccgcgccgctc 64 |||||||||||||||||||| Sbjct: 47051 cgtcggcgcccgcgccgctc 47070
>emb|AL845469.1|CE2RSSE Caenorhabditis elegans Other 2RSSE, complete sequence Length = 15330 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 agaagcagacattttctacgttccattt 307 |||||||||||||||| | ||||||||| Sbjct: 8130 agaagcagacattttcaaagttccattt 8157
>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence Length = 199993 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 570 atgtcccaaatgttgacctttgtgatta 597 |||||| ||||||| ||||||||||||| Sbjct: 155060 atgtccaaaatgttaacctttgtgatta 155033
>ref|XM_758832.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0290) partial mRNA Length = 1294 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 cgatctgctcaggctcttca 122 |||||||||||||||||||| Sbjct: 758 cgatctgctcaggctcttca 777
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ctgatcaacctgcttggcaa 403 |||||||||||||||||||| Sbjct: 2119135 ctgatcaacctgcttggcaa 2119154
>emb|Z99568.2|SPAC3C7 S.pombe chromosome I cosmid c3C7 Length = 35052 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cattttctacgttccatttt 308 |||||||||||||||||||| Sbjct: 27156 cattttctacgttccatttt 27175
>gb|AE008718.1| Salmonella typhimurium LT2, section 26 of 220 of the complete genome Length = 20938 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 7643 gccgtcggcgcccgcgccgc 7662
>emb|CR376602.1| plasmid pFBAOT6 from Aeromonas punctata (Aeromonas caviae) HGB5, complete sequence Length = 84749 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ggccgtcggcgcccgcgccg 61 |||||||||||||||||||| Sbjct: 68867 ggccgtcggcgcccgcgccg 68848
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cgtcggcgcccgcgccgctc 64 |||||||||||||||||||| Sbjct: 273157 cgtcggcgcccgcgccgctc 273138
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cgtcggcgcccgcgccgctc 64 |||||||||||||||||||| Sbjct: 184629 cgtcggcgcccgcgccgctc 184610
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgtcggcgcccgcgccgctc 64 |||||||||||||||||||| Sbjct: 322920 cgtcggcgcccgcgccgctc 322939
>emb|AL669989.1|NCB8L21 Neurospora crassa DNA linkage group II BAC clone B8L21 Length = 70704 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 acaccaccaacctcacctcc 157 |||||||||||||||||||| Sbjct: 9625 acaccaccaacctcacctcc 9606
>emb|AL627267.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 3/20 Length = 240050 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 15929 gccgtcggcgcccgcgccgc 15948
>emb|AJ719345.1| Gallus gallus mRNA for hypothetical protein, clone 1i14 Length = 3788 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 ttgctcctgaatcacaaagacttc 248 ||||||||||||||||||| |||| Sbjct: 1040 ttgctcctgaatcacaaaggcttc 1017
>ref|NM_001006448.1| Gallus gallus polymerase (RNA) II (DNA directed) polypeptide B, 140kDa (POLR2B), mRNA Length = 3788 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 ttgctcctgaatcacaaagacttc 248 ||||||||||||||||||| |||| Sbjct: 1040 ttgctcctgaatcacaaaggcttc 1017
>gb|AC114296.2| Homo sapiens chromosome 5 clone RP11-119J18, complete sequence Length = 39450 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tcagaaggcagagatcatgt 426 |||||||||||||||||||| Sbjct: 18766 tcagaaggcagagatcatgt 18785
>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence Length = 179350 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 cacaaagacttctgaagaatgtta 260 ||||||||||||||||| |||||| Sbjct: 3832 cacaaagacttctgaagtatgtta 3855
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cgtggccgtcggcgcccgcgccgc 62 |||||||| ||||||||||||||| Sbjct: 23783907 cgtggccggcggcgcccgcgccgc 23783930
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 2331392 gccgtcggcgcccgcgccgc 2331373
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 772301 gccgtcggcgcccgcgccgc 772320
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 2446172 gccgtcggcgcccgcgccgc 2446153
>gb|AC006290.1|AC006290 Homo sapiens chromosome 5, P1 clone 949e7 (LBNL H123), complete sequence Length = 13751 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tcagaaggcagagatcatgt 426 |||||||||||||||||||| Sbjct: 4072 tcagaaggcagagatcatgt 4091
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gccgtcggcgcccgcgccgc 62 |||||||||||||||||||| Sbjct: 586436 gccgtcggcgcccgcgccgc 586455
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ttttctacgttccatttttc 310 |||||||||||||||||||| Sbjct: 1362129 ttttctacgttccatttttc 1362148
>gb|U59915.1|SPU59915 Schizosaccharomyces pombe Noc1p (noc1) mRNA, complete cds Length = 2026 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cattttctacgttccatttt 308 |||||||||||||||||||| Sbjct: 399 cattttctacgttccatttt 418
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 cgtggccgtcggcgcccgcgccgc 62 |||||||| ||||||||||||||| Sbjct: 24095576 cgtggccggcggcgcccgcgccgc 24095599
>emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chromosome X, complete sequence Length = 181805 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 gctggagaaacaagaatgcaaggc 354 ||||||||| |||||||||||||| Sbjct: 155269 gctggagaatcaagaatgcaaggc 155246
>gb|U10335.1|CGU10335 Crassostrea gigas RNA polymerase II second largest subunit mRNA, partial cds Length = 2577 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 ttgctcctgaatcacaaagacttc 248 ||||||||||||||||||| |||| Sbjct: 363 ttgctcctgaatcacaaaggcttc 340 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,229,024 Number of Sequences: 3902068 Number of extensions: 5229024 Number of successful extensions: 102347 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101823 Number of HSP's gapped (non-prelim): 524 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)