>RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score =  150 bits (378), Expect = 4e-36
 Identities = 83/187 (44%), Positives = 124/187 (66%), Gaps = 11/187 (5%)
 Frame = +1

Query: 115 RYRDRAKERREDQNPDYEPTEL----GSFHAVAPPG-ADLRLEDAQKISIEKSKYLGGDL 279
           +YRDRAKERR+  N DYE TEL     ++ AV P   AD    + ++  I++SK+LGGD+
Sbjct: 98  KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDM 157

Query: 280 EHTHLVKGLDFALLNKVRSEI-DKKPDAEDGKDAKARETKED----RAVSFRTAIAKSVY 444
           EHTHLVKGLDFALL KVR+EI  K+ + E+  +   +ETK+D      + F+T + ++VY
Sbjct: 158 EHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVY 217

Query: 445 QWTVKQQQSMIKANDMFLPGRMAFIYNMEDG-LNSDIPTTLHRSKADCPVPEEMVTVSVD 621
           +   K +    + N++FLPGRMA++ +++D   ++DIPTTL RSKADCP  E   T++ +
Sbjct: 218 RMLFKSKS--YERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTN 275

Query: 622 GSVLDRI 642
             V+ ++
Sbjct: 276 DIVISKL 282

>RED_HUMAN (Q13123) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score =  147 bits (372), Expect = 2e-35
 Identities = 83/187 (44%), Positives = 122/187 (65%), Gaps = 11/187 (5%)
 Frame = +1

Query: 115 RYRDRAKERREDQNPDYEPTEL----GSFHAVAPPG-ADLRLEDAQKISIEKSKYLGGDL 279
           +YRDRAKERR+  N DYE TEL     ++ AV P   AD    + ++  I++SK+LGGD+
Sbjct: 98  KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDM 157

Query: 280 EHTHLVKGLDFALLNKVRSEI-DKKPDAEDGKDAKARETKED----RAVSFRTAIAKSVY 444
           EHTHLVKGLDFALL KVR EI  K  + E+  +   +ETK+D      + F+T + ++VY
Sbjct: 158 EHTHLVKGLDFALLQKVRLEIASKDKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVY 217

Query: 445 QWTVKQQQSMIKANDMFLPGRMAFIYNMEDG-LNSDIPTTLHRSKADCPVPEEMVTVSVD 621
           +   K +    + N++FLPGRMA++ +++D   ++DIPTTL RSKADCP  E   T++ +
Sbjct: 218 RMLFKSK--AYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTN 275

Query: 622 GSVLDRI 642
             V+ ++
Sbjct: 276 DIVISKL 282

>YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.3 (EC|
           3.1.3.48)
          Length = 398

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = +1

Query: 361 EDGKDAKARETKEDRAVSFRTAIAKSVYQWTVKQQQSMIKANDMFLPGRMAFIYNMEDGL 540
           ++ KD K  E KE+R    +  + +    W+ ++    + AN  F    +   +   D  
Sbjct: 81  DEKKDDKKEEKKEERKEEKKEEVKEP---WSEEEPAKRMVANGFFTTTNVGGTFKQTDNF 137

Query: 541 NSDIPT------TLHRSKA-DCPVPEEMVTVSVDG 624
            + + +       +H+ +A DCP+PEE +    +G
Sbjct: 138 KTPMDSCPSFKNNMHKIRAPDCPIPEEKLVKLTNG 172

>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui|
          Length = 677

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = +1

Query: 130 AKERREDQNPDYEPTELGSFHAVA--PPGADLRLEDAQKISIEKSKYLGGDLEHTHLVKG 303
           A+E+ E+  P+ +    G+ +     PP AD R ED        +K  GGD E     K 
Sbjct: 563 AQEKSEEVKPE-DANASGTVNPAETQPPAADTRPED--------NKSTGGDAEKKEDKKS 613

Query: 304 LDFALLNKVRSEIDKKPDAEDGKDAKARETKEDR 405
                  KV   + K+  ++D KDA     KED+
Sbjct: 614 TP----KKVTKTVKKRDKSKDKKDAPKDSNKEDK 643

>TAL2_STRCO (Q9XAC0) Transaldolase 2 (EC 2.2.1.2)|
          Length = 372

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 220 RLEDAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKARETK 396
           ++ DA    +EK+K  G DL   H V       +++V +EIDK+ DA    +AKA+  K
Sbjct: 174 KVMDAFLTGLEKAKERGLDLSQIHSVASF---FVSRVDTEIDKRIDALGTDEAKAQRGK 229

>TAL2_STRAW (Q829U5) Transaldolase 2 (EC 2.2.1.2)|
          Length = 372

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +1

Query: 229 DAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKARETK 396
           DA    +EK+K  G DL   H V       +++V +EIDK+ DA    +AKA   K
Sbjct: 177 DAYLAGLEKAKERGLDLSKIHSVASF---FVSRVDTEIDKRIDALGTPEAKAARGK 229

>POLG_BVDVC (Q96662) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3907

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 26/145 (17%)
 Frame = +1

Query: 121  RDRAKERREDQNPDYEPTELGSFHAVAPPGADLRLEDAQKISIE---KSKYLGGDLE--- 282
            RD+  +    Q+P      L  FH +A P       D     +E     K   G LE   
Sbjct: 3358 RDKIDKNENQQSPGLHDKLLEIFHTIAQPSLRHTYSDVTWEQLEAGVNRKGAAGFLEKKN 3417

Query: 283  -------HTHLVKGL--DFALLNKVR------SEIDKKPDAEDGKDAKARETKEDRAVSF 417
                     HLV+ L  D     K+R       + +K+  ++D +     + K+ R + +
Sbjct: 3418 VGEVLDSEKHLVEQLIRDLKTGRKIRYYETAIPKNEKRDVSDDWQSGDLVDEKKPRVIQY 3477

Query: 418  -----RTAIAKSVYQWTVKQQQSMI 477
                 R AI K +Y W VKQQ  +I
Sbjct: 3478 PEAKTRLAITKVMYNW-VKQQPVVI 3501

>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3898

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
 Frame = +1

Query: 121  RDRAKERREDQNPDYEPTELGSFHAVAPPGADLRLEDAQKISIE------------KSKY 264
            RD+  +    QNP+     L  FH +A P       +     +E            + K 
Sbjct: 3349 RDKIDKNENRQNPELHNKLLEIFHTIADPSLKHTYGEVTWEQLEAGINRKGAAGFLEKKN 3408

Query: 265  LGGDLE-HTHLVKGL--DFALLNKVR------SEIDKKPDAEDGKDAKARETKEDRAVSF 417
            +G  L+   HLV+ L  D     K+R       + +K+  ++D +     + K+ R + +
Sbjct: 3409 IGEVLDSEKHLVEQLVRDLKAGRKIRYYETAIPKNEKRDVSDDWQAGDLVDEKKPRVIQY 3468

Query: 418  -----RTAIAKSVYQWTVKQQQSMI 477
                 R AI K +Y W VKQQ  +I
Sbjct: 3469 PEAKTRLAITKVMYNW-VKQQPVVI 3492

>UVRC_ZYMMO (Q5NPR4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 664

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
 Frame = +1

Query: 127 RAKERREDQNPDYEPTEL----------GSFHAVAPPGADLRLEDAQKISIEKSKYLGGD 276
           R   R E  +PD+  +E           G  HAV    A+  + D   + I K       
Sbjct: 498 RRFSRLERSDPDHSSSEWPDLLLIDGGKGQVHAVKDILAEQGISDIAIVGISKGPDRNAG 557

Query: 277 LEHTHLVKGLDFAL 318
            EH HLV G ++AL
Sbjct: 558 REHFHLVDGSEYAL 571

>CNGA1_CANFA (Q28279) cGMP-gated cation channel alpha 1 (CNG channel alpha 1)|
           (CNG-1) (CNG1) (Cyclic nucleotide gated channel alpha 1)
           (Cyclic nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gate
          Length = 691

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
 Frame = +1

Query: 109 TPRYRDRAKERREDQNPD----YEPTELGSFHAVAPPGADLRLEDAQKISIEKSKYLGGD 276
           TP  RD  +   + ++P     Y P  +  F+       +   ++ +K   EK    G  
Sbjct: 58  TPHARDSCRNNSQRRDPSQREQYLPGAIALFNVNNSSNKEQEPKEKKKKKKEKKSKSGDK 117

Query: 277 LEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKARETKE 399
            E+       D     K   E +KK   E GKD K  E KE
Sbjct: 118 NENKK-----DSEKKKKKEKEKEKKNKEEKGKDKKEEEKKE 153

>CALD1_HUMAN (Q05682) Caldesmon (CDM)|
          Length = 793

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 115 RYRDRAKERREDQNPDYEPTELGSFHAVAPPGADLRLEDAQKISIEKSKYLGGDLEHTHL 294
           R R  A E+R+    D    +   F    P G+ L++E+  +  + KS      ++ TH 
Sbjct: 610 RRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEERAEF-LNKSVQKSSGVKSTH- 667

Query: 295 VKGLDFALLNKVRSEIDKKPDAEDG-KDAK 381
                 A+++K+ S +++   A +G K AK
Sbjct: 668 ----QAAIVSKIDSRLEQYTSAIEGTKSAK 693


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,761,690
Number of Sequences: 219361
Number of extensions: 1682016
Number of successful extensions: 3468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)