ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23d20 |
|---|---|
| Clone Library Name | barley_pub |
>AVT6_YEAST (P40074) Vacuolar amino acid transporter 6| Length = 448 Score = 57.4 bits (137), Expect = 3e-08 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 12/189 (6%) Frame = +2 Query: 17 KRLDSLRYTXXXXXXXXXXXXXITAGIAILRLIEGTAEIPKLF--------PEIHEINSI 172 K+L+SLRY + +L + + EI +L P+ H++N Sbjct: 141 KKLNSLRYASMVAISSVAYLCVLV----LLHYVAPSDEILRLKGRISYLLPPQSHDLN-- 194 Query: 173 WELFTAVPVLVTAYICHYNVHSIDNELE----DRSQTKPIVRTSLALCSSVYVATSFFAY 340 + +P+ V AY CH+N+ SI NE + P++ SLAL +Y+A Y Sbjct: 195 --VLNTLPIFVFAYTCHHNMFSIINEQRSSRFEHVMKIPLIAISLALI--LYIAIGCAGY 250 Query: 341 LLFGEATLSDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLLFP 520 L FG+ + +++ + +V + I R++ V+ VML FP+ R ++ +L Sbjct: 251 LTFGDNIIGNIIMLYP-------QAVSSTIGRIAIVLLVMLAFPLQCHPARASIHQIL-- 301 Query: 521 TSRHISHDN 547 +H + +N Sbjct: 302 --QHFAEEN 308
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 53.1 bits (126), Expect = 6e-07 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 2/132 (1%) Frame = +2 Query: 191 VPVLVTAYICHYNVHSIDNELEDRSQTK--PIVRTSLALCSSVYVATSFFAYLLFGEATL 364 +P++ A++CH V I EL+D S+ K I S+A+ +Y + F YL F Sbjct: 290 IPIMAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYIMYFLAALFGYLTFYNGVE 349 Query: 365 SDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLLFPTSRHISHD 544 S++L + + V VRV+ + V L PIV F +R + +LFP Sbjct: 350 SELLHTYSK---VDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQ---EFS 403 Query: 545 NRRFTIITVSLL 580 R +I V LL Sbjct: 404 WLRHVLIAVGLL 415
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 52.0 bits (123), Expect = 1e-06 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = +2 Query: 191 VPVLVTAYICHYNVHSIDNELEDRSQTK--PIVRTSLALCSSVYVATSFFAYLLFGEATL 364 +P++ A++CH V I EL+D S+ K I S+A+ +Y + F YL F + Sbjct: 291 IPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVE 350 Query: 365 SDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLLF 517 S++L + + V VRV+ ++ V L PIV F +R + +LF Sbjct: 351 SELLHTYSK---VDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLF 398
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 52.0 bits (123), Expect = 1e-06 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Frame = +2 Query: 191 VPVLVTAYICHYNVHSIDNELEDRSQTK--PIVRTSLALCSSVYVATSFFAYLLFGEATL 364 +P++ A++CH V I EL+D S+ K I S+A+ +Y + F YL F + Sbjct: 290 IPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVE 349 Query: 365 SDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLLF 517 S++L + + V VRV+ ++ V L PIV F +R + +LF Sbjct: 350 SELLHTYSK---VDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLF 397
>AVT5_YEAST (P38176) Vacuolar amino acid transporter 5| Length = 509 Score = 49.3 bits (116), Expect = 8e-06 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Frame = +2 Query: 185 TAVPVLVTAYICHYNVHSIDNELEDRS--QTKPIVRTSLALCSSVYVATSFFAYLLFGEA 358 T +P+ V AY CH+N+ S+ NE D+S + I ++ L +Y+ Y+ FGE Sbjct: 257 TTLPIFVFAYTCHHNMFSVINEQVDKSFKVIRRIPIFAIVLAYFLYIIIGGTGYMTFGEN 316 Query: 359 TLSDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLL 514 + ++L + +S+ I R++ ++ VML FP+ R ++ ++ Sbjct: 317 IVGNILTLYP-------NSISTTIGRLAMLLLVMLAFPLQCHPCRSSVKNII 361
>AVT7_YEAST (P40501) Vacuolar amino acid transporter 7| Length = 490 Score = 48.9 bits (115), Expect = 1e-05 Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Frame = +2 Query: 17 KRLDSLRYTXXXXXXXXXXXXXITAGIAILRLIEGTAEIPKLFP------EIHEINSIWE 178 K+LD L+Y+ + + L G E+ + +IH+ + Sbjct: 135 KKLDQLKYSSILGLFALAYISILVFSHFVFEL--GKGELTNILRNDICWWKIHDFKGLLS 192 Query: 179 LFTAVPVLVTAYICHYNVHSIDNELEDRSQTKP--IVRTSLALCSSVYVATSFFAYLLFG 352 F+ +++ A+ N+ + NEL+D S ++ S++L +++++ YL FG Sbjct: 193 TFS---IIIFAFTGSMNLFPMINELKDNSMENITFVINNSISLSTALFLIVGLSGYLTFG 249 Query: 353 EATLSDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLL 514 TL +++ N+D +S++ I + ++L FP++F LR+ ++ ++ Sbjct: 250 NETLGNLMLNYDP------NSIWIVIGKFCLGSMLILSFPLLFHPLRIAVNNVI 297
>AVT4_YEAST (P50944) Vacuolar amino acid transporter 4| Length = 713 Score = 36.2 bits (82), Expect = 0.070 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Frame = +2 Query: 275 PIVRTSLALCSSV-YVATSFFAYLLFGEATLSDVLANFDSDLHIPFSSVFNDIVRVSYVV 451 P+V + L +++ +++ + YL +G + +L N +P S++F +++++ Y + Sbjct: 515 PLVLALVILTATILFISIATLGYLAYGSNVQTVILLN------LPQSNIFVNLIQLFYSI 568 Query: 452 HVMLVFPIVFFALRLNLDGLLFP--TSRHISHDN 547 +ML P+ F ++ FP T ++ HD+ Sbjct: 569 AIMLSTPLQLFPAIKIIENKFFPKFTKIYVKHDD 602
>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)| (Protein unc-47) Length = 486 Score = 33.9 bits (76), Expect = 0.35 Identities = 26/111 (23%), Positives = 51/111 (45%) Frame = +2 Query: 185 TAVPVLVTAYICHYNVHSIDNELEDRSQTKPIVRTSLALCSSVYVATSFFAYLLFGEATL 364 T V ++V Y H + +++ +++ +Q +++ S + V +L FGE T Sbjct: 269 TIVGMVVFGYTSHIFLPNLEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQ 328 Query: 365 SDVLANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNLDGLLF 517 ++ + +P S F +V + VV +L +P+ F+A L LF Sbjct: 329 EEISNS------LPNQS-FKILVNLILVVKALLSYPLPFYAAVQLLKNNLF 372
>POT15_HUMAN (Q6S5H4) Prostate, ovary, testis expressed protein on chromosome 15| Length = 581 Score = 32.7 bits (73), Expect = 0.77 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +1 Query: 70 GFCCHHCWNCYSQTDRRNRGDSQTLPRDT*NQFHLGTLYSRAGS--CHC 210 G CCHHC+ C + N G S D N F + TL S+ G CHC Sbjct: 62 GKCCHHCFPCCRGSGTSNVGTS----GDHDNSF-MKTLRSKMGKWCCHC 105
>GFP_AEQVI (P42212) Green fluorescent protein| Length = 238 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 6/56 (10%) Frame = -1 Query: 502 QVEPKGKEDYRED------KHDMDYIAHSDYIIEDRAEWNMKVGVKISEHIGEGSL 353 ++E KG D++ED K + +Y +H+ YI+ D+ + +KV KI +I +GS+ Sbjct: 122 RIELKGI-DFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSV 176
>MRAY_STAES (Q8CPK7) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = +2 Query: 314 YVATSFFAYLLFGEATLSDV--LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFA 487 ++A A + F LSDV L +F +DLHIPF N + +S+ + +VF V F+ Sbjct: 112 FLAQIIIAVIFF---VLSDVFHLVHFTTDLHIPF---VNFDIPLSFAYVIFIVFWQVGFS 165 Query: 488 LRLNL-DGL 511 +NL DGL Sbjct: 166 NAVNLTDGL 174
>MRAY_STAEQ (Q5HQ10) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = +2 Query: 314 YVATSFFAYLLFGEATLSDV--LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFA 487 ++A A + F LSDV L +F +DLHIPF N + +S+ + +VF V F+ Sbjct: 112 FLAQIIIAVIFF---VLSDVFHLVHFTTDLHIPF---VNFDIPLSFAYVIFIVFWQVGFS 165 Query: 488 LRLNL-DGL 511 +NL DGL Sbjct: 166 NAVNLTDGL 174
>MRAY_STAAB (Q2YXE0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFLQVGFSNAVNLTDGL 174
>STAR_BRARE (Q9DG10) Steroidogenic acute regulatory protein, mitochondrial| precursor (StAR) (StARD1) Length = 285 Score = 30.4 bits (67), Expect = 3.8 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 424 IEDRAEWNMKVG-VKISEHIGEGSLAKEEICKETCGNI 314 +E EWN V VKI + IG+ ++ EI ET GN+ Sbjct: 139 MEQMGEWNPNVKQVKILQKIGQETMITHEISAETPGNV 176
>MRAY_STAAW (Q8NX36) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAU (P68784) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAS (Q6GA30) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAR (Q6GHQ3) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAN (P68783) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAM (P68782) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAAC (Q5HGP9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>MRAY_STAA3 (Q2FHQ5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2 Query: 374 LANFDSDLHIPFSSVFNDIVRVSYVVHVMLVFPIVFFALRLNL-DGL 511 L NF + +HIPF++V + +S+ + +VF V F+ +NL DGL Sbjct: 131 LVNFSTSIHIPFTNV---AIPLSFAYVIFIVFWQVGFSNAVNLTDGL 174
>DTNB_HUMAN (O60941) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)| Length = 627 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = +1 Query: 181 LYSRAGSCHCLYLPLQCSQHR*RAGR*KSD*ANCANFTGFVFECLCCHKF-LCISPLWRG 357 L R ++ P++CS R C + GF + C CH + LC + WRG Sbjct: 227 LMHRLAHVENVFHPVECSYCR------------CESMMGFRYRCQQCHNYQLCQNCFWRG 274 Query: 358 Y 360 + Sbjct: 275 H 275
>DTNB_MOUSE (O70585) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B) (MDTN-B)| Length = 700 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = +1 Query: 181 LYSRAGSCHCLYLPLQCSQHR*RAGR*KSD*ANCANFTGFVFECLCCHKF-LCISPLWRG 357 L R ++ P++CS +C + GF + C CH + LC + WRG Sbjct: 227 LMHRLAHVENVFHPVECSY------------CHCESMMGFRYRCQQCHNYQLCQNCFWRG 274 Query: 358 Y 360 + Sbjct: 275 H 275
>DTNB_RAT (P84060) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)| Length = 654 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = +1 Query: 181 LYSRAGSCHCLYLPLQCSQHR*RAGR*KSD*ANCANFTGFVFECLCCHKF-LCISPLWRG 357 L R ++ P++CS +C + GF + C CH + LC + WRG Sbjct: 227 LMHRLAHVENVFHPVECSY------------CHCESMMGFRYRCQQCHNYQLCQNCFWRG 274 Query: 358 Y 360 + Sbjct: 275 H 275
>BZFB_XENLA (Q9W6I0) Basic FGF-repressed Zic-binding protein homolog| (Zic3-binding protein) Length = 200 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +2 Query: 212 YICHYNVHSIDNELEDRSQTKPIVRTSLALCSSVYVATSFFAYLLFG--EATLSD 370 Y+C Y VHS+ ++E R + I S+ L +S+ T F +FG E +SD Sbjct: 71 YMCRYIVHSMWEDVEQRGKVMGI--DSVTLKNSMRSMTEIFYAAIFGYDEGIISD 123
>CO3_ONCMY (P98093) Complement C3-1 [Contains: Complement C3 beta chain;| Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c fragment; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Comple Length = 1640 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/79 (29%), Positives = 35/79 (44%) Frame = +2 Query: 242 DNELEDRSQTKPIVRTSLALCSSVYVATSFFAYLLFGEATLSDVLANFDSDLHIPFSSVF 421 +N L+D T I SL+ + VA F VL F DL +P+S+V Sbjct: 773 NNFLKDSITTWQITAISLSKTHGICVADPFEMI----------VLKEFFIDLKLPYSAVR 822 Query: 422 NDIVRVSYVVHVMLVFPIV 478 N+ + V ++H PI+ Sbjct: 823 NEQLEVKAILHNYSEDPII 841
>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1| homolog) (Iguana protein) Length = 898 Score = 29.3 bits (64), Expect = 8.5 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Frame = -1 Query: 511 ESIQVEPKGKEDYREDKHDMDYIAHSDYIIEDRAEWNMKVGVKISEHIGEGSLAKEEICK 332 +S+Q +P ++H + + + + +W K+ +H E SL +EE+CK Sbjct: 348 QSVQTQPNASTS---NEHWQEVVKLQQKLHKQEVKWTGKMQKMKEDHDREKSLLQEELCK 404 Query: 331 ETC----GNINTRTQSQ*SSH 281 + G +R Q Q SH Sbjct: 405 VSSAVSEGMEESRRQVQELSH 425
>TAT_HV2SB (P12453) TAT protein (Transactivating regulatory protein)| Length = 130 Score = 29.3 bits (64), Expect = 8.5 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 9/44 (20%) Frame = +1 Query: 37 IHICSVSCSCRGFCCHHC---------WNCYSQTDRRNRGDSQT 141 + C+ C C+G CC HC CY + RR R +T Sbjct: 47 LETCNNKCFCKG-CCFHCQLCFLNKGLGICYDRKGRRRRSPKKT 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,178,053 Number of Sequences: 219361 Number of extensions: 1531381 Number of successful extensions: 4883 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4872 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
